{"id":"https://openalex.org/W2008601217","doi":"https://doi.org/10.1145/2382936.2382994","title":"Microarray vs. RNA-Seq","display_name":"Microarray vs. RNA-Seq","publication_year":2012,"publication_date":"2012-10-07","ids":{"openalex":"https://openalex.org/W2008601217","doi":"https://doi.org/10.1145/2382936.2382994","mag":"2008601217"},"language":"en","primary_location":{"id":"doi:10.1145/2382936.2382994","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2382936.2382994","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the ACM Conference on Bioinformatics, Computational Biology and Biomedicine","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5054786410","display_name":"Ayat Hatem","orcid":null},"institutions":[{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ayat Hatem","raw_affiliation_strings":["The Ohio State University, Columbus, OH","The Ohio State University, Columbus (OH)#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Ohio State University, Columbus, OH","institution_ids":["https://openalex.org/I52357470"]},{"raw_affiliation_string":"The Ohio State University, Columbus (OH)#TAB#","institution_ids":["https://openalex.org/I52357470"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5105776460","display_name":"Kamer Kaya","orcid":null},"institutions":[{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kamer Kaya","raw_affiliation_strings":["The Ohio State University, Columbus, OH","The Ohio State University, Columbus (OH)#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Ohio State University, Columbus, OH","institution_ids":["https://openalex.org/I52357470"]},{"raw_affiliation_string":"The Ohio State University, Columbus (OH)#TAB#","institution_ids":["https://openalex.org/I52357470"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5026046737","display_name":"\u00dcmit V. \u00c7ataly\u00fcrek","orcid":"https://orcid.org/0000-0002-5625-3758"},"institutions":[{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"\u00dcmit V. \u00c7ataly\u00fcrek","raw_affiliation_strings":["The Ohio State University, Columbus, OH","The Ohio State University, Columbus (OH)#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Ohio State University, Columbus, OH","institution_ids":["https://openalex.org/I52357470"]},{"raw_affiliation_string":"The Ohio State University, Columbus (OH)#TAB#","institution_ids":["https://openalex.org/I52357470"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I52357470"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"450","last_page":"457"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rna-seq","display_name":"RNA-Seq","score":0.6532533168792725},{"id":"https://openalex.org/keywords/microarray","display_name":"Microarray","score":0.6012821793556213},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.5859820246696472},{"id":"https://openalex.org/keywords/microarray-analysis-techniques","display_name":"Microarray analysis techniques","score":0.5842208862304688},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5837079286575317},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.5305065512657166},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5062159895896912},{"id":"https://openalex.org/keywords/enhanced-data-rates-for-gsm-evolution","display_name":"Enhanced Data Rates for GSM Evolution","score":0.4337219297885895},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3916199505329132},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.34057366847991943},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3102538287639618},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.25992196798324585},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.23386678099632263},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.21143382787704468},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.13319146633148193}],"concepts":[{"id":"https://openalex.org/C107397762","wikidata":"https://www.wikidata.org/wiki/Q2542347","display_name":"RNA-Seq","level":5,"score":0.6532533168792725},{"id":"https://openalex.org/C186836561","wikidata":"https://www.wikidata.org/wiki/Q1931516","display_name":"Microarray","level":4,"score":0.6012821793556213},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.5859820246696472},{"id":"https://openalex.org/C8415881","wikidata":"https://www.wikidata.org/wiki/Q6839217","display_name":"Microarray analysis techniques","level":4,"score":0.5842208862304688},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5837079286575317},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.5305065512657166},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5062159895896912},{"id":"https://openalex.org/C162307627","wikidata":"https://www.wikidata.org/wiki/Q204833","display_name":"Enhanced Data Rates for GSM Evolution","level":2,"score":0.4337219297885895},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3916199505329132},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.34057366847991943},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3102538287639618},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.25992196798324585},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.23386678099632263},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.21143382787704468},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.13319146633148193}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/2382936.2382994","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2382936.2382994","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the ACM Conference on Bioinformatics, Computational Biology and Biomedicine","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":44,"referenced_works":["https://openalex.org/W1533486682","https://openalex.org/W1667144422","https://openalex.org/W1876024155","https://openalex.org/W1970156673","https://openalex.org/W1981509058","https://openalex.org/W1988512943","https://openalex.org/W1994698160","https://openalex.org/W1994803330","https://openalex.org/W1995745530","https://openalex.org/W2006070913","https://openalex.org/W2015430600","https://openalex.org/W2021533617","https://openalex.org/W2049089284","https://openalex.org/W2049765467","https://openalex.org/W2059232554","https://openalex.org/W2072602203","https://openalex.org/W2074613642","https://openalex.org/W2077836479","https://openalex.org/W2093081886","https://openalex.org/W2096604705","https://openalex.org/W2101181377","https://openalex.org/W2102281458","https://openalex.org/W2104843251","https://openalex.org/W2110065044","https://openalex.org/W2112811019","https://openalex.org/W2117310472","https://openalex.org/W2119884047","https://openalex.org/W2120842170","https://openalex.org/W2121211805","https://openalex.org/W2130392703","https://openalex.org/W2134672568","https://openalex.org/W2140937045","https://openalex.org/W2147714160","https://openalex.org/W2149153852","https://openalex.org/W2149491227","https://openalex.org/W2152064427","https://openalex.org/W2152653671","https://openalex.org/W2154947819","https://openalex.org/W2155142785","https://openalex.org/W2160164696","https://openalex.org/W2160514535","https://openalex.org/W2171662214","https://openalex.org/W2364425459","https://openalex.org/W2585142303"],"related_works":["https://openalex.org/W2041540252","https://openalex.org/W2796636403","https://openalex.org/W2415545834","https://openalex.org/W1547158732","https://openalex.org/W3203113381","https://openalex.org/W2366558827","https://openalex.org/W170658859","https://openalex.org/W1483316219","https://openalex.org/W4310366902","https://openalex.org/W3023720143"],"abstract_inverted_index":{"While":[0],"microarrays":[1],"have":[2],"been":[3],"successfully":[4],"used":[5,63],"by":[6,40,59,85,116],"the":[7,60,86,108,113,117,134],"researchers":[8],"to":[9,24,50,78,99,126],"analyze":[10],"gene":[11],"expression":[12,34],"levels,":[13],"cutting":[14],"edge":[15],"high":[16],"throughput":[17],"sequencing":[18],"technologies":[19],"now":[20],"made":[21],"it":[22],"possible":[23],"go":[25],"one":[26],"step":[27],"further.":[28],"Recent":[29],"studies":[30],"show":[31,71],"that":[32,72,106],"absolute":[33],"levels":[35],"are":[36,83,96],"not":[37,120],"accurately":[38],"estimated":[39],"microarray":[41,65,87],"data.":[42,68,88,147],"In":[43],"this":[44],"work,":[45],"we":[46,103],"elaborate":[47],"various":[48],"experiments":[49,70],"compare":[51],"highly-active":[52],"subnetworks":[53,114],"in":[54,133,137],"protein-protein":[55],"interaction":[56],"networks":[57,81,91],"found":[58,115],"state-of-the-art":[61],"tools":[62,118,139],"with":[64,145],"or":[66],"RNA-Seq":[67,73,109,146],"Our":[69],"data":[74,110],"can":[75,92],"be":[76,100,121,141],"important":[77],"detect":[79],"active":[80],"which":[82,95],"overlooked":[84],"Furthermore,":[89],"these":[90],"contain":[93],"genes":[94],"biologically":[97],"proved":[98],"significant.":[101],"However,":[102],"also":[104],"observed":[105],"when":[107],"is":[111],"used,":[112],"may":[119,140],"effective":[122],"as":[123],"biomarkers":[124],"due":[125],"their":[127],"large":[128],"sizes.":[129],"Hence,":[130],"some":[131],"changes":[132],"algorithms":[135],"incorporated":[136],"current":[138],"necessary":[142],"while":[143],"working":[144]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}