{"id":"https://openalex.org/W2043916285","doi":"https://doi.org/10.1145/2382936.2382991","title":"Predicting protective bacterial antigens using random forest classifiers","display_name":"Predicting protective bacterial antigens using random forest classifiers","publication_year":2012,"publication_date":"2012-10-07","ids":{"openalex":"https://openalex.org/W2043916285","doi":"https://doi.org/10.1145/2382936.2382991","mag":"2043916285"},"language":"en","primary_location":{"id":"doi:10.1145/2382936.2382991","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2382936.2382991","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the ACM Conference on Bioinformatics, Computational Biology and Biomedicine","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5079233454","display_name":"Yasser EL\u2010Manzalawy","orcid":"https://orcid.org/0000-0002-4681-7994"},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]},{"id":"https://openalex.org/I184834183","display_name":"Al-Azhar University","ror":"https://ror.org/05fnp1145","country_code":"EG","type":"education","lineage":["https://openalex.org/I184834183"]}],"countries":["EG","US"],"is_corresponding":false,"raw_author_name":"Yasser El-Manzalawy","raw_affiliation_strings":["Iowa State University, Ames, IA and Al-Azhar University, Cairo, Egypt"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Iowa State University, Ames, IA and Al-Azhar University, Cairo, Egypt","institution_ids":["https://openalex.org/I184834183","https://openalex.org/I173911158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074103258","display_name":"Drena Dobbs","orcid":"https://orcid.org/0000-0003-4404-9554"},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Drena Dobbs","raw_affiliation_strings":["Iowa State University, Ames, IA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Iowa State University, Ames, IA","institution_ids":["https://openalex.org/I173911158"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5004737962","display_name":"Vasant Honavar","orcid":"https://orcid.org/0000-0001-5399-3489"},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Vasant Honavar","raw_affiliation_strings":["Iowa State University, Ames, IA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Iowa State University, Ames, IA","institution_ids":["https://openalex.org/I173911158"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.1344,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.52237771,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"426","last_page":"433"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/antigen","display_name":"Antigen","score":0.7684996128082275},{"id":"https://openalex.org/keywords/antigenicity","display_name":"Antigenicity","score":0.7316229343414307},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5468449592590332},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.5385165810585022},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.454234778881073},{"id":"https://openalex.org/keywords/protein-sequencing","display_name":"Protein sequencing","score":0.44915926456451416},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.32661911845207214},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3105242848396301},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.25459855794906616},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.2486737072467804},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1940755546092987},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.149443119764328}],"concepts":[{"id":"https://openalex.org/C147483822","wikidata":"https://www.wikidata.org/wiki/Q103537","display_name":"Antigen","level":2,"score":0.7684996128082275},{"id":"https://openalex.org/C2779026604","wikidata":"https://www.wikidata.org/wiki/Q4774742","display_name":"Antigenicity","level":3,"score":0.7316229343414307},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5468449592590332},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.5385165810585022},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.454234778881073},{"id":"https://openalex.org/C10010492","wikidata":"https://www.wikidata.org/wiki/Q3142557","display_name":"Protein sequencing","level":4,"score":0.44915926456451416},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.32661911845207214},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3105242848396301},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.25459855794906616},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.2486737072467804},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1940755546092987},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.149443119764328},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1145/2382936.2382991","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2382936.2382991","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the ACM Conference on Bioinformatics, Computational Biology and Biomedicine","raw_type":"proceedings-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.301.1405","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.301.1405","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cs.iastate.edu/~honavar/Papers/acmbcb2012.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G8072816499","display_name":null,"funder_award_id":"GM06638","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":59,"referenced_works":["https://openalex.org/W144629417","https://openalex.org/W1489213177","https://openalex.org/W1496604422","https://openalex.org/W1555243480","https://openalex.org/W1570741102","https://openalex.org/W1586355707","https://openalex.org/W1599268017","https://openalex.org/W1607040979","https://openalex.org/W1608462934","https://openalex.org/W1968972970","https://openalex.org/W1984794455","https://openalex.org/W1986830331","https://openalex.org/W1987218429","https://openalex.org/W1990675829","https://openalex.org/W2009741912","https://openalex.org/W2017321063","https://openalex.org/W2022905067","https://openalex.org/W2025150647","https://openalex.org/W2040455921","https://openalex.org/W2045911289","https://openalex.org/W2049108850","https://openalex.org/W2058731099","https://openalex.org/W2063524713","https://openalex.org/W2069130539","https://openalex.org/W2076282513","https://openalex.org/W2079948773","https://openalex.org/W2083409341","https://openalex.org/W2090390840","https://openalex.org/W2096495474","https://openalex.org/W2102367710","https://openalex.org/W2106393550","https://openalex.org/W2107432340","https://openalex.org/W2110828252","https://openalex.org/W2118131043","https://openalex.org/W2119870871","https://openalex.org/W2129834345","https://openalex.org/W2132433679","https://openalex.org/W2142856684","https://openalex.org/W2144369911","https://openalex.org/W2145957695","https://openalex.org/W2152116196","https://openalex.org/W2152770371","https://openalex.org/W2154058033","https://openalex.org/W2156039063","https://openalex.org/W2156875887","https://openalex.org/W2156909104","https://openalex.org/W2158714788","https://openalex.org/W2161746138","https://openalex.org/W2166087152","https://openalex.org/W2168111317","https://openalex.org/W2168977926","https://openalex.org/W2170547958","https://openalex.org/W2170700642","https://openalex.org/W2171295581","https://openalex.org/W2911964244","https://openalex.org/W4230846739","https://openalex.org/W4235859326","https://openalex.org/W4243296770","https://openalex.org/W4255137765"],"related_works":["https://openalex.org/W786416207","https://openalex.org/W2367852944","https://openalex.org/W2115812853","https://openalex.org/W2004255297","https://openalex.org/W2078727461","https://openalex.org/W2008472229","https://openalex.org/W2435839362","https://openalex.org/W2396550544","https://openalex.org/W2023432258","https://openalex.org/W2977939402"],"abstract_inverted_index":{"Identifying":[0],"protective":[1,66],"antigens":[2,41,43],"from":[3],"bacterial":[4],"pathogens":[5],"is":[6,54],"important":[7],"for":[8,14,58,62],"developing":[9],"vaccines.":[10],"Most":[11],"computational":[12,60],"methods":[13,34,61],"predicting":[15],"protein":[16,25],"antigenicity":[17],"rely":[18],"on":[19],"sequence":[20,26],"similarity":[21],"between":[22],"a":[23],"query":[24],"and":[27],"at":[28],"least":[29],"one":[30],"known":[31,50],"antigen.":[32],"Such":[33],"limit":[35],"our":[36],"ability":[37],"to":[38,48],"predict":[39],"novel":[40],"(i.e.,":[42],"that":[44],"are":[45],"not":[46],"homologous":[47],"any":[49],"antigen).":[51],"Therefore,":[52],"there":[53],"an":[55],"urgent":[56],"need":[57],"alignment-free":[59],"reliable":[63],"prediction":[64],"of":[65],"antigens.":[67]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":3},{"year":2017,"cited_by_count":1},{"year":2014,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
