{"id":"https://openalex.org/W2098242705","doi":"https://doi.org/10.1145/2382936.2382986","title":"An integrated optimization framework for inferring two generation kinships and parental genotypes from microsatellite samples","display_name":"An integrated optimization framework for inferring two generation kinships and parental genotypes from microsatellite samples","publication_year":2012,"publication_date":"2012-10-07","ids":{"openalex":"https://openalex.org/W2098242705","doi":"https://doi.org/10.1145/2382936.2382986","mag":"2098242705"},"language":"en","primary_location":{"id":"doi:10.1145/2382936.2382986","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2382936.2382986","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the ACM Conference on Bioinformatics, Computational Biology and Biomedicine","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5047648692","display_name":"Daehan Won","orcid":"https://orcid.org/0000-0002-2566-8061"},"institutions":[{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Daehan Won","raw_affiliation_strings":["University of Washington, Seattle, WA","University Of Washington (Seattle, WA)"],"affiliations":[{"raw_affiliation_string":"University of Washington, Seattle, WA","institution_ids":["https://openalex.org/I201448701"]},{"raw_affiliation_string":"University Of Washington (Seattle, WA)","institution_ids":["https://openalex.org/I201448701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013227742","display_name":"Chun-An Chou","orcid":"https://orcid.org/0000-0001-5806-2093"},"institutions":[{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chun-An Chou","raw_affiliation_strings":["University of Washington, Seattle, WA","University Of Washington (Seattle, WA)"],"affiliations":[{"raw_affiliation_string":"University of Washington, Seattle, WA","institution_ids":["https://openalex.org/I201448701"]},{"raw_affiliation_string":"University Of Washington (Seattle, WA)","institution_ids":["https://openalex.org/I201448701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015925945","display_name":"W. Art Chaovalitwongse","orcid":"https://orcid.org/0000-0002-8051-5981"},"institutions":[{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"W. Art Chaovalitwongse","raw_affiliation_strings":["University of Washington, Seattle, WA","University Of Washington (Seattle, WA)"],"affiliations":[{"raw_affiliation_string":"University of Washington, Seattle, WA","institution_ids":["https://openalex.org/I201448701"]},{"raw_affiliation_string":"University Of Washington (Seattle, WA)","institution_ids":["https://openalex.org/I201448701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060005215","display_name":"Tanya Berger\u2010Wolf","orcid":"https://orcid.org/0000-0001-7610-1412"},"institutions":[{"id":"https://openalex.org/I39422238","display_name":"University of Illinois Chicago","ror":"https://ror.org/02mpq6x41","country_code":"US","type":"education","lineage":["https://openalex.org/I39422238"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tanya Y. Berger-Wolf","raw_affiliation_strings":["University of Illinois at Chicago, Chicago, IL"],"affiliations":[{"raw_affiliation_string":"University of Illinois at Chicago, Chicago, IL","institution_ids":["https://openalex.org/I39422238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061957076","display_name":"Bhaskar DasGupta","orcid":"https://orcid.org/0000-0001-5614-5477"},"institutions":[{"id":"https://openalex.org/I39422238","display_name":"University of Illinois Chicago","ror":"https://ror.org/02mpq6x41","country_code":"US","type":"education","lineage":["https://openalex.org/I39422238"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bhaskar Dasgupta","raw_affiliation_strings":["University of Illinois at Chicago, Chicago, IL"],"affiliations":[{"raw_affiliation_string":"University of Illinois at Chicago, Chicago, IL","institution_ids":["https://openalex.org/I39422238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5107521651","display_name":"Ashfaq A. Khokhar","orcid":null},"institutions":[{"id":"https://openalex.org/I39422238","display_name":"University of Illinois Chicago","ror":"https://ror.org/02mpq6x41","country_code":"US","type":"education","lineage":["https://openalex.org/I39422238"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ashfaq A. Khokhar","raw_affiliation_strings":["University of Illinois at Chicago, Chicago, IL"],"affiliations":[{"raw_affiliation_string":"University of Illinois at Chicago, Chicago, IL","institution_ids":["https://openalex.org/I39422238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043738976","display_name":"Marco Maggioni","orcid":"https://orcid.org/0000-0001-8603-8998"},"institutions":[{"id":"https://openalex.org/I39422238","display_name":"University of Illinois Chicago","ror":"https://ror.org/02mpq6x41","country_code":"US","type":"education","lineage":["https://openalex.org/I39422238"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Marco Maggioni","raw_affiliation_strings":["University of Illinois at Chicago, Chicago, IL"],"affiliations":[{"raw_affiliation_string":"University of Illinois at Chicago, Chicago, IL","institution_ids":["https://openalex.org/I39422238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5106668196","display_name":"Saad Sheikh","orcid":null},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Saad Sheikh","raw_affiliation_strings":["University of Florida, Gainesville, FL"],"affiliations":[{"raw_affiliation_string":"University of Florida, Gainesville, FL","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000112408","display_name":"Mary V. Ashley","orcid":"https://orcid.org/0000-0003-1755-7043"},"institutions":[{"id":"https://openalex.org/I39422238","display_name":"University of Illinois Chicago","ror":"https://ror.org/02mpq6x41","country_code":"US","type":"education","lineage":["https://openalex.org/I39422238"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mary V. Ashley","raw_affiliation_strings":["University of Illinois at Chicago, Chicago, IL"],"affiliations":[{"raw_affiliation_string":"University of Illinois at Chicago, Chicago, IL","institution_ids":["https://openalex.org/I39422238"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5069824823","display_name":"Jason Palagi","orcid":null},"institutions":[{"id":"https://openalex.org/I39422238","display_name":"University of Illinois Chicago","ror":"https://ror.org/02mpq6x41","country_code":"US","type":"education","lineage":["https://openalex.org/I39422238"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jason Palagi","raw_affiliation_strings":["University of Illinois at Chicago, Chicago, IL"],"affiliations":[{"raw_affiliation_string":"University of Illinois at Chicago, Chicago, IL","institution_ids":["https://openalex.org/I39422238"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5047648692"],"corresponding_institution_ids":["https://openalex.org/I201448701"],"apc_list":null,"apc_paid":null,"fwci":0.2027,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.62618081,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"392","last_page":"399"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10751","display_name":"Forensic and Genetic Research","score":0.9757999777793884,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10751","display_name":"Forensic and Genetic Research","score":0.9757999777793884,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.9728999733924866,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10594","display_name":"Genetic and phenotypic traits in livestock","score":0.9563000202178955,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/microsatellite","display_name":"Microsatellite","score":0.7419219017028809},{"id":"https://openalex.org/keywords/genotype","display_name":"Genotype","score":0.704580545425415},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5412629842758179},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4343506991863251},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.31694501638412476},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.31556233763694763},{"id":"https://openalex.org/keywords/allele","display_name":"Allele","score":0.09225454926490784},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.09106418490409851}],"concepts":[{"id":"https://openalex.org/C61320498","wikidata":"https://www.wikidata.org/wiki/Q265193","display_name":"Microsatellite","level":4,"score":0.7419219017028809},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.704580545425415},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5412629842758179},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4343506991863251},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.31694501638412476},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.31556233763694763},{"id":"https://openalex.org/C180754005","wikidata":"https://www.wikidata.org/wiki/Q80726","display_name":"Allele","level":3,"score":0.09225454926490784},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09106418490409851}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/2382936.2382986","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2382936.2382986","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the ACM Conference on Bioinformatics, Computational Biology and Biomedicine","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3387388801","display_name":null,"funder_award_id":"IIS-1231132","funder_id":"https://openalex.org/F4320337389","funder_display_name":"Division of Information and Intelligent Systems"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320337389","display_name":"Division of Information and Intelligent Systems","ror":"https://ror.org/053a2cp42"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":21,"referenced_works":["https://openalex.org/W1628218342","https://openalex.org/W1902647886","https://openalex.org/W1943102713","https://openalex.org/W1969359885","https://openalex.org/W1996134775","https://openalex.org/W2000131964","https://openalex.org/W2015201000","https://openalex.org/W2055625638","https://openalex.org/W2109716699","https://openalex.org/W2118260892","https://openalex.org/W2119232685","https://openalex.org/W2122126732","https://openalex.org/W2129932093","https://openalex.org/W2137418627","https://openalex.org/W2139169217","https://openalex.org/W2152778230","https://openalex.org/W2162623478","https://openalex.org/W2164410151","https://openalex.org/W2165067195","https://openalex.org/W2171741251","https://openalex.org/W2175509004"],"related_works":["https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189","https://openalex.org/W2013243191","https://openalex.org/W1971568933","https://openalex.org/W2058131830"],"abstract_inverted_index":{"With":[0],"the":[1,16,52,58,74,107,110],"growing":[2],"development":[3],"and":[4,28,70,80,92,102,118,126,132,149],"application":[5],"of":[6,19,41,61,64,82,109],"genetic":[7],"data":[8,94],"availability,":[9],"it":[10],"provides":[11],"new":[12,34],"possibilities":[13],"in":[14,71],"establishing":[15],"genealogical":[17],"relationships":[18],"individual":[20],"organisms":[21],"such":[22],"as":[23],"sibling":[24,68],"reconstruction,":[25],"parentage":[26,119],"inference,":[27],"inheritance":[29,65],"investigation.":[30],"We":[31],"propose":[32],"a":[33,42],"integrated":[35],"optimization":[36,55],"framework":[37,56,137],"for":[38,129,143],"parental":[39,76,130],"reconstruction":[40,117],"single-generation":[43],"population":[44],"using":[45],"microsatellite":[46],"data.":[47],"Without":[48],"prior":[49],"information":[50],"about":[51],"population,":[53],"our":[54,83,136],"uses":[57],"combinatorial":[59],"concepts":[60],"Mendel's":[62],"laws":[63],"to":[66,145],"reconstruct":[67],"groups":[69],"turn":[72],"identifies":[73],"associated":[75],"genotypes.":[77],"The":[78,122],"effectiveness":[79],"robustness":[81],"proposed":[84,111],"approach":[85,112],"were":[86],"evaluated":[87],"by":[88],"both":[89],"real":[90],"biological":[91],"simulated":[93],"sets,":[95],"covering":[96],"different":[97],"mating":[98],"systems:":[99],"monogamy,":[100],"semi-monogamy,":[101],"polygamy.":[103],"Additionally,":[104],"we":[105],"compared":[106],"results":[108,123],"with":[113],"other":[114],"state-of-the-art":[115],"sibship":[116],"inference":[120,128],"methods.":[121],"demonstrate":[124],"efficient":[125],"accurate":[127],"genotypes,":[131],"potentially":[133],"suggest":[134],"that":[135],"can":[138],"provide":[139],"an":[140],"insightful":[141],"roadmap":[142],"investigators":[144],"navigate":[146],"fundamental":[147],"ecological":[148],"evolutionary":[150],"studies.":[151]},"counts_by_year":[{"year":2016,"cited_by_count":1},{"year":2014,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
