{"id":"https://openalex.org/W2025180548","doi":"https://doi.org/10.1145/2361999.2362006","title":"Delivering ICT infrastructure for biomedical research","display_name":"Delivering ICT infrastructure for biomedical research","publication_year":2012,"publication_date":"2012-08-20","ids":{"openalex":"https://openalex.org/W2025180548","doi":"https://doi.org/10.1145/2361999.2362006","mag":"2025180548"},"language":"en","primary_location":{"id":"doi:10.1145/2361999.2362006","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2361999.2362006","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the WICSA/ECSA 2012 Companion Volume","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5075459206","display_name":"Tommi Nyr\u00f6nen","orcid":"https://orcid.org/0000-0002-5569-5183"},"institutions":[{"id":"https://openalex.org/I4210150043","display_name":"CSC - IT Center for Science (Finland)","ror":"https://ror.org/04m8m1253","country_code":"FI","type":"company","lineage":["https://openalex.org/I4210150043"]}],"countries":["FI"],"is_corresponding":true,"raw_author_name":"Tommi Henrik Nyr\u00f6nen","raw_affiliation_strings":["CSC -- IT Center for Science, ESPOO, Finland"],"affiliations":[{"raw_affiliation_string":"CSC -- IT Center for Science, ESPOO, Finland","institution_ids":["https://openalex.org/I4210150043"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075198986","display_name":"Jarno Laitinen","orcid":"https://orcid.org/0000-0002-7952-9024"},"institutions":[{"id":"https://openalex.org/I4210150043","display_name":"CSC - IT Center for Science (Finland)","ror":"https://ror.org/04m8m1253","country_code":"FI","type":"company","lineage":["https://openalex.org/I4210150043"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Jarno Laitinen","raw_affiliation_strings":["CSC -- IT Center for Science, ESPOO, Finland"],"affiliations":[{"raw_affiliation_string":"CSC -- IT Center for Science, ESPOO, Finland","institution_ids":["https://openalex.org/I4210150043"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076064278","display_name":"Olli Tourunen","orcid":null},"institutions":[{"id":"https://openalex.org/I4210150043","display_name":"CSC - IT Center for Science (Finland)","ror":"https://ror.org/04m8m1253","country_code":"FI","type":"company","lineage":["https://openalex.org/I4210150043"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Olli Tourunen","raw_affiliation_strings":["CSC -- IT Center for Science, ESPOO, Finland"],"affiliations":[{"raw_affiliation_string":"CSC -- IT Center for Science, ESPOO, Finland","institution_ids":["https://openalex.org/I4210150043"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064475757","display_name":"Danny Sternkopf","orcid":null},"institutions":[{"id":"https://openalex.org/I4210150043","display_name":"CSC - IT Center for Science (Finland)","ror":"https://ror.org/04m8m1253","country_code":"FI","type":"company","lineage":["https://openalex.org/I4210150043"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Danny Sternkopf","raw_affiliation_strings":["CSC -- IT Center for Science, ESPOO, Finland"],"affiliations":[{"raw_affiliation_string":"CSC -- IT Center for Science, ESPOO, Finland","institution_ids":["https://openalex.org/I4210150043"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053818441","display_name":"Risto Laurikainen","orcid":null},"institutions":[{"id":"https://openalex.org/I4210150043","display_name":"CSC - IT Center for Science (Finland)","ror":"https://ror.org/04m8m1253","country_code":"FI","type":"company","lineage":["https://openalex.org/I4210150043"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Risto Laurikainen","raw_affiliation_strings":["CSC -- IT Center for Science, ESPOO, Finland"],"affiliations":[{"raw_affiliation_string":"CSC -- IT Center for Science, ESPOO, Finland","institution_ids":["https://openalex.org/I4210150043"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044617051","display_name":"Per \u00d6ster","orcid":"https://orcid.org/0000-0001-5836-8850"},"institutions":[{"id":"https://openalex.org/I4210150043","display_name":"CSC - IT Center for Science (Finland)","ror":"https://ror.org/04m8m1253","country_code":"FI","type":"company","lineage":["https://openalex.org/I4210150043"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Per \u00d6ster","raw_affiliation_strings":["CSC -- IT Center for Science, ESPOO, Finland"],"affiliations":[{"raw_affiliation_string":"CSC -- IT Center for Science, ESPOO, Finland","institution_ids":["https://openalex.org/I4210150043"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035677747","display_name":"Pekka T. Lehtovuori","orcid":null},"institutions":[{"id":"https://openalex.org/I4210150043","display_name":"CSC - IT Center for Science (Finland)","ror":"https://ror.org/04m8m1253","country_code":"FI","type":"company","lineage":["https://openalex.org/I4210150043"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Pekka T. Lehtovuori","raw_affiliation_strings":["CSC -- IT Center for Science, ESPOO, Finland"],"affiliations":[{"raw_affiliation_string":"CSC -- IT Center for Science, ESPOO, Finland","institution_ids":["https://openalex.org/I4210150043"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103944056","display_name":"Timo A. Miettinen","orcid":null},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Timo A. Miettinen","raw_affiliation_strings":["University of Helsinki, Finland","University of Helsinki, , Finland"],"affiliations":[{"raw_affiliation_string":"University of Helsinki, Finland","institution_ids":["https://openalex.org/I133731052"]},{"raw_affiliation_string":"University of Helsinki, , Finland","institution_ids":["https://openalex.org/I133731052"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000704311","display_name":"Tomi Simonen","orcid":null},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Tomi Simonen","raw_affiliation_strings":["University of Helsinki, Finland","University of Helsinki, , Finland"],"affiliations":[{"raw_affiliation_string":"University of Helsinki, Finland","institution_ids":["https://openalex.org/I133731052"]},{"raw_affiliation_string":"University of Helsinki, , Finland","institution_ids":["https://openalex.org/I133731052"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060620306","display_name":"Teemu Perheentupa","orcid":null},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Teemu Perheentupa","raw_affiliation_strings":["University of Helsinki, Finland","University of Helsinki, , Finland"],"affiliations":[{"raw_affiliation_string":"University of Helsinki, Finland","institution_ids":["https://openalex.org/I133731052"]},{"raw_affiliation_string":"University of Helsinki, , Finland","institution_ids":["https://openalex.org/I133731052"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014441735","display_name":"Imre V\u00e4strik","orcid":"https://orcid.org/0000-0001-6658-9311"},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Imre V\u00e4strik","raw_affiliation_strings":["University of Helsinki, Finland","University of Helsinki, , Finland"],"affiliations":[{"raw_affiliation_string":"University of Helsinki, Finland","institution_ids":["https://openalex.org/I133731052"]},{"raw_affiliation_string":"University of Helsinki, , Finland","institution_ids":["https://openalex.org/I133731052"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050670008","display_name":"Olli Kallioniemi","orcid":"https://orcid.org/0000-0002-3231-0332"},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Olli Kallioniemi","raw_affiliation_strings":["University of Helsinki, Finland","University of Helsinki, , Finland"],"affiliations":[{"raw_affiliation_string":"University of Helsinki, Finland","institution_ids":["https://openalex.org/I133731052"]},{"raw_affiliation_string":"University of Helsinki, , Finland","institution_ids":["https://openalex.org/I133731052"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063893991","display_name":"Andrew Lyall","orcid":"https://orcid.org/0000-0002-4366-6465"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Andrew Lyall","raw_affiliation_strings":["EMBL -- EBI, Hinxton, Cambridgeshire, UK"],"affiliations":[{"raw_affiliation_string":"EMBL -- EBI, Hinxton, Cambridgeshire, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5068874280","display_name":"Janet M. Thornton","orcid":"https://orcid.org/0000-0003-0824-4096"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Janet Thornton","raw_affiliation_strings":["EMBL -- EBI, Hinxton, Cambridgeshire, UK"],"affiliations":[{"raw_affiliation_string":"EMBL -- EBI, Hinxton, Cambridgeshire, UK","institution_ids":["https://openalex.org/I1303153112"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":14,"corresponding_author_ids":["https://openalex.org/A5075459206"],"corresponding_institution_ids":["https://openalex.org/I4210150043"],"apc_list":null,"apc_paid":null,"fwci":3.5393,"has_fulltext":false,"cited_by_count":7,"citation_normalized_percentile":{"value":0.93495757,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"37","last_page":"44"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9945999979972839,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9945999979972839,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9664999842643738,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9369999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/information-and-communications-technology","display_name":"Information and Communications Technology","score":0.6335922479629517},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5087407231330872},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.211197167634964}],"concepts":[{"id":"https://openalex.org/C67363961","wikidata":"https://www.wikidata.org/wiki/Q5268834","display_name":"Information and Communications Technology","level":2,"score":0.6335922479629517},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5087407231330872},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.211197167634964}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/2361999.2362006","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2361999.2362006","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the WICSA/ECSA 2012 Companion Volume","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.6299999952316284}],"awards":[{"id":"https://openalex.org/G7176812090","display_name":null,"funder_award_id":"1.36E+23","funder_id":"https://openalex.org/F4320321108","funder_display_name":"Academy of Finland"},{"id":"https://openalex.org/G7856722693","display_name":null,"funder_award_id":"211601","funder_id":"https://openalex.org/F4320334960","funder_display_name":"Seventh Framework Programme"}],"funders":[{"id":"https://openalex.org/F4320321108","display_name":"Academy of Finland","ror":"https://ror.org/05k73zm37"},{"id":"https://openalex.org/F4320334960","display_name":"Seventh Framework Programme","ror":"https://ror.org/00k4n6c32"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":14,"referenced_works":["https://openalex.org/W265298701","https://openalex.org/W1573191158","https://openalex.org/W1997512351","https://openalex.org/W2036880373","https://openalex.org/W2055459874","https://openalex.org/W2057461700","https://openalex.org/W2065783627","https://openalex.org/W2109701112","https://openalex.org/W2118147999","https://openalex.org/W2140212289","https://openalex.org/W2144320400","https://openalex.org/W2156166905","https://openalex.org/W2172194140","https://openalex.org/W2321661157"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2478288626","https://openalex.org/W2350741829","https://openalex.org/W2530322880","https://openalex.org/W1596801655"],"abstract_inverted_index":{"This":[0],"paper":[1],"describes":[2],"an":[3,134],"implementation":[4,176],"of":[5,41,97,123,146,150,177],"the":[6,25,39,46,54,61,66,73,98,108,113,117,124,139,151,161,169,178,185],"Infrastructure-as-a-Service":[7],"(IaaS)":[8],"concept":[9,71],"for":[10,30,65,160,193],"scientific":[11,43],"computing":[12],"and":[13,52,79,84,104,157,164,183],"seven":[14],"service":[15,34,70,147],"pilot":[16],"implementations":[17],"with":[18,60,168],"requirements":[19,36],"from":[20],"biomedical":[21,152,194],"use":[22,40,47],"cases":[23,48],"at":[24,76],"CSC":[26],"-":[27],"IT":[28,74],"Center":[29],"Science.":[31],"The":[32,69,91],"key":[33],"design":[35],"were":[37],"enabling":[38],"any":[42],"software":[44],"environment":[45],"needed":[49,192],"to":[50,132,138,187],"succeed,":[51],"delivering":[53],"distributed":[55,162],"infrastructure":[56,136,191],"ICT":[57,63,190],"resources":[58,64,93,126,166],"seamlessly":[59],"local":[62,99,125],"scientist":[67,140],"users.":[68],"targets":[72],"administrators":[75],"research":[77],"organisations":[78,153],"delivers":[80],"virtualised":[81,92],"compute":[82,163],"cluster":[83,100],"storage":[85,165],"capacity":[86],"via":[87],"private":[88],"network":[89,118],"solutions.":[90],"can":[94,106,127,180],"become":[95],"part":[96],"as":[101,112],"virtual":[102],"nodes":[103,115],"they":[105],"share":[107],"same":[109],"file":[110],"system":[111],"physical":[114],"assuming":[116],"performance":[119],"is":[120],"sufficient.":[121],"Extension":[122],"then":[128],"be":[129],"made":[130],"transparent":[131],"enable":[133],"easy":[135],"uptake":[137],"end-users.":[141],"Based":[142],"on":[143],"20":[144],"months":[145],"piloting":[148],"most":[149],"express":[154],"a":[155,174],"sustained":[156],"growing":[158],"need":[159],"delivered":[167],"IaaS.":[170],"We":[171],"conclude":[172],"that":[173],"successful":[175],"IaaS":[179],"improve":[181],"access":[182],"reduce":[184],"effort":[186],"run":[188],"expensive":[189],"research.":[195]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2013,"cited_by_count":3}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
