{"id":"https://openalex.org/W2082640495","doi":"https://doi.org/10.1145/2335755.2335836","title":"The CIPRES science gateway","display_name":"The CIPRES science gateway","publication_year":2012,"publication_date":"2012-07-16","ids":{"openalex":"https://openalex.org/W2082640495","doi":"https://doi.org/10.1145/2335755.2335836","mag":"2082640495"},"language":"en","primary_location":{"id":"doi:10.1145/2335755.2335836","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2335755.2335836","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 1st Conference of the Extreme Science and Engineering Discovery Environment: Bridging from the eXtreme to the campus and beyond","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5035660803","display_name":"Mark A. Miller","orcid":"https://orcid.org/0000-0001-9590-3728"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mark A. Miller","raw_affiliation_strings":["University of California, San Diego, La Jolla, CA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of California, San Diego, La Jolla, CA","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020903210","display_name":"Wayne Pfeiffer","orcid":null},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Wayne Pfeiffer","raw_affiliation_strings":["University of California, San Diego, La Jolla, CA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of California, San Diego, La Jolla, CA","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5041940220","display_name":"Terri Schwartz","orcid":null},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Terri Schwartz","raw_affiliation_strings":["University of California, San Diego, La Jolla CA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of California, San Diego, La Jolla CA","institution_ids":["https://openalex.org/I36258959"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I36258959"],"apc_list":null,"apc_paid":null,"fwci":12.521,"has_fulltext":false,"cited_by_count":329,"citation_normalized_percentile":{"value":0.98992512,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"8"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11354","display_name":"Evolution and Paleontology Studies","score":0.9919999837875366,"subfield":{"id":"https://openalex.org/subfields/1911","display_name":"Paleontology"},"field":{"id":"https://openalex.org/fields/19","display_name":"Earth and Planetary Sciences"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11879","display_name":"Protist diversity and phylogeny","score":0.9606999754905701,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7235111594200134},{"id":"https://openalex.org/keywords/gateway","display_name":"Gateway (web page)","score":0.6931332945823669},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.524901270866394},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.4775562882423401},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.4472280740737915},{"id":"https://openalex.org/keywords/default-gateway","display_name":"Default gateway","score":0.44398415088653564},{"id":"https://openalex.org/keywords/supercomputer","display_name":"Supercomputer","score":0.42583537101745605},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.32318106293678284},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.2886120080947876},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.24761274456977844},{"id":"https://openalex.org/keywords/computer-network","display_name":"Computer network","score":0.21617841720581055},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.10925167798995972},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.09167903661727905}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7235111594200134},{"id":"https://openalex.org/C2777710495","wikidata":"https://www.wikidata.org/wiki/Q5527195","display_name":"Gateway (web page)","level":2,"score":0.6931332945823669},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.524901270866394},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.4775562882423401},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.4472280740737915},{"id":"https://openalex.org/C187713609","wikidata":"https://www.wikidata.org/wiki/Q2465461","display_name":"Default gateway","level":2,"score":0.44398415088653564},{"id":"https://openalex.org/C83283714","wikidata":"https://www.wikidata.org/wiki/Q121117","display_name":"Supercomputer","level":2,"score":0.42583537101745605},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.32318106293678284},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.2886120080947876},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.24761274456977844},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.21617841720581055},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.10925167798995972},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.09167903661727905},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/2335755.2335836","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2335755.2335836","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 1st Conference of the Extreme Science and Engineering Discovery Environment: Bridging from the eXtreme to the campus and beyond","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/8","display_name":"Decent work and economic growth","score":0.44999998807907104}],"awards":[],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":25,"referenced_works":["https://openalex.org/W1700785270","https://openalex.org/W1967865695","https://openalex.org/W1989975400","https://openalex.org/W2002638840","https://openalex.org/W2019892067","https://openalex.org/W2028302194","https://openalex.org/W2029272288","https://openalex.org/W2033952216","https://openalex.org/W2035970724","https://openalex.org/W2038223049","https://openalex.org/W2074135817","https://openalex.org/W2080693057","https://openalex.org/W2090950329","https://openalex.org/W2101464940","https://openalex.org/W2110835349","https://openalex.org/W2112147882","https://openalex.org/W2123699854","https://openalex.org/W2140803428","https://openalex.org/W2141246111","https://openalex.org/W2141747524","https://openalex.org/W2146058063","https://openalex.org/W2146429980","https://openalex.org/W2154881444","https://openalex.org/W2166727755","https://openalex.org/W4386638519"],"related_works":["https://openalex.org/W2384867379","https://openalex.org/W3214280620","https://openalex.org/W2329539859","https://openalex.org/W3191490922","https://openalex.org/W2122599377","https://openalex.org/W2365053174","https://openalex.org/W2918879532","https://openalex.org/W3045301923","https://openalex.org/W2794872059","https://openalex.org/W2080562317"],"abstract_inverted_index":{"The":[0,53,93],"CIPRES":[1],"Science":[2],"Gateway":[3],"(CSG)":[4],"provides":[5],"browser-based":[6],"access":[7],"to":[8],"computationally":[9],"demanding":[10],"phylogenetic":[11],"codes":[12],"run":[13,82],"on":[14,87],"large":[15],"HPC":[16],"resources.":[17],"Since":[18],"its":[19,69],"release":[20],"in":[21,31,38,96,111],"December":[22],"2009,":[23],"there":[24],"has":[25],"been":[26],"a":[27],"sustained,":[28],"near-linear":[29],"growth":[30,95],"the":[32,91,101,112],"rate":[33],"of":[34,40,42,50,56,73],"CSG":[35,63,102],"use,":[36],"both":[37],"terms":[39],"number":[41,49],"users":[43,80],"submitting":[44],"jobs":[45,51,86],"each":[46],"month":[47,61],"and":[48],"submitted.":[52],"average":[54],"amount":[55],"computational":[57,109],"time":[58],"used":[59],"per":[60],"by":[62],"increased":[64],"more":[65,76],"than":[66,77],"5-fold":[67],"since":[68],"initial":[70],"release.":[71],"As":[72],"April":[74],"2012,":[75],"4,000":[78],"unique":[79],"have":[81],"parallel":[83],"tree":[84],"inference":[85],"TeraGrid/XSEDE":[88],"resources":[89,110],"using":[90],"CSG.":[92],"steady":[94],"resource":[97],"use":[98],"suggests":[99],"that":[100],"is":[103],"meeting":[104],"an":[105],"important":[106],"need":[107],"for":[108],"Systematics/Evolutionary":[113],"Biology":[114],"community.":[115]},"counts_by_year":[{"year":2026,"cited_by_count":31},{"year":2025,"cited_by_count":39},{"year":2024,"cited_by_count":46},{"year":2023,"cited_by_count":37},{"year":2022,"cited_by_count":42},{"year":2021,"cited_by_count":47},{"year":2020,"cited_by_count":32},{"year":2019,"cited_by_count":17},{"year":2018,"cited_by_count":11},{"year":2017,"cited_by_count":6},{"year":2016,"cited_by_count":8},{"year":2015,"cited_by_count":7},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":4}],"updated_date":"2026-08-28T12:50:07.497085","created_date":"2025-10-10T00:00:00"}
