{"id":"https://openalex.org/W2008676731","doi":"https://doi.org/10.1145/2166896.2166913","title":"Adding text mining workflows as web services to the BioCatalogue","display_name":"Adding text mining workflows as web services to the BioCatalogue","publication_year":2011,"publication_date":"2011-12-07","ids":{"openalex":"https://openalex.org/W2008676731","doi":"https://doi.org/10.1145/2166896.2166913","mag":"2008676731"},"language":"en","primary_location":{"id":"doi:10.1145/2166896.2166913","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2166896.2166913","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 4th International Workshop on Semantic Web Applications and Tools for the Life Sciences","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5018102048","display_name":"Georgios Kontonasios","orcid":null},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Georgios Kontonasios","raw_affiliation_strings":["University of Manchester"],"affiliations":[{"raw_affiliation_string":"University of Manchester","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060320466","display_name":"Ioannis Korkontzelos","orcid":"https://orcid.org/0000-0001-8052-2471"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Ioannis Korkontzelos","raw_affiliation_strings":["University of Manchester"],"affiliations":[{"raw_affiliation_string":"University of Manchester","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038473184","display_name":"BalaKrishna Kolluru","orcid":null},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"BalaKrishna Kolluru","raw_affiliation_strings":["University of Manchester"],"affiliations":[{"raw_affiliation_string":"University of Manchester","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5077976343","display_name":"Sophia Ananiadou","orcid":"https://orcid.org/0000-0002-4097-9191"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Sophia Ananiadou","raw_affiliation_strings":["University of Manchester"],"affiliations":[{"raw_affiliation_string":"University of Manchester","institution_ids":["https://openalex.org/I28407311"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5018102048"],"corresponding_institution_ids":["https://openalex.org/I28407311"],"apc_list":null,"apc_paid":null,"fwci":0.3909,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.60873513,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"50","last_page":"57"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9873999953269958,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.849309504032135},{"id":"https://openalex.org/keywords/bespoke","display_name":"Bespoke","score":0.8203937411308289},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7782009243965149},{"id":"https://openalex.org/keywords/web-service","display_name":"Web service","score":0.614260196685791},{"id":"https://openalex.org/keywords/component","display_name":"Component (thermodynamics)","score":0.5930296182632446},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.5645711421966553},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.5598512887954712},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.464793860912323},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.4459463357925415},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.29810771346092224},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.14210787415504456}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.849309504032135},{"id":"https://openalex.org/C44210515","wikidata":"https://www.wikidata.org/wiki/Q16968978","display_name":"Bespoke","level":2,"score":0.8203937411308289},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7782009243965149},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.614260196685791},{"id":"https://openalex.org/C168167062","wikidata":"https://www.wikidata.org/wiki/Q1117970","display_name":"Component (thermodynamics)","level":2,"score":0.5930296182632446},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.5645711421966553},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.5598512887954712},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.464793860912323},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.4459463357925415},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.29810771346092224},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.14210787415504456},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C97355855","wikidata":"https://www.wikidata.org/wiki/Q11473","display_name":"Thermodynamics","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1145/2166896.2166913","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2166896.2166913","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 4th International Workshop on Semantic Web Applications and Tools for the Life Sciences","raw_type":"proceedings-article"},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/bb071873-732f-4e2a-a2f5-1914c15934a4","is_oa":false,"landing_page_url":"https://research.manchester.ac.uk/en/publications/bb071873-732f-4e2a-a2f5-1914c15934a4","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Kontonasios, G, Korkontzelos, I, Kolluru, B K & Ananiadou, S 2011, Adding text mining workflows as web services to the BioCatalogue. in SWAT4LS 2011 : 4th International Workshop on Semantic Web Applications and Tools for the Life Sciences. Association for Computing Machinery, London, pp. 50-57, 4th International Workshop on Semantic Web Aplications and Tools for the Life Sciences (SWAT4LS)., London, 1/01/24. https://doi.org/10.1145/2166896.2166913","raw_type":"info:eu-repo/semantics/conferenceObject"},{"id":"pmh:oai:pure.atira.dk:publications/bb071873-732f-4e2a-a2f5-1914c15934a4","is_oa":false,"landing_page_url":"https://www.research.manchester.ac.uk/portal/en/publications/adding-text-mining-workflows-as-web-services-to-the-biocatalogue(bb071873-732f-4e2a-a2f5-1914c15934a4).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Kontonasios, G, Korkontzelos, I, Kolluru, B K & Ananiadou, S 2011, Adding text mining workflows as web services to the BioCatalogue. in SWAT4LS 2011 : 4th International Workshop on Semantic Web Applications and Tools for the Life Sciences. Association for Computing Machinery, London, pp. 50-57, 4th International Workshop on Semantic Web Aplications and Tools for the Life Sciences (SWAT4LS)., London, 1/01/24. https://doi.org/10.1145/2166896.2166913","raw_type":"info:eu-repo/semantics/conferenceObject"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.5099999904632568,"id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G1686462611","display_name":"Automated Biological Event Extraction from the Literature for Drug Discovery","funder_award_id":"BB/G013160/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G4793955247","display_name":null,"funder_award_id":"BB/G53025X/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G5246379475","display_name":null,"funder_award_id":"BB/G013160/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":30,"referenced_works":["https://openalex.org/W126044612","https://openalex.org/W192665053","https://openalex.org/W1585912603","https://openalex.org/W1780933788","https://openalex.org/W1835740130","https://openalex.org/W1970989375","https://openalex.org/W1977289091","https://openalex.org/W1996902131","https://openalex.org/W2046813315","https://openalex.org/W2049107599","https://openalex.org/W2055043387","https://openalex.org/W2066003039","https://openalex.org/W2085541230","https://openalex.org/W2092419931","https://openalex.org/W2092563396","https://openalex.org/W2096876337","https://openalex.org/W2097678794","https://openalex.org/W2103397879","https://openalex.org/W2130524976","https://openalex.org/W2136482257","https://openalex.org/W2142741334","https://openalex.org/W2145825942","https://openalex.org/W2147231162","https://openalex.org/W2156467546","https://openalex.org/W2160943260","https://openalex.org/W2169918010","https://openalex.org/W2172143128","https://openalex.org/W2273982008","https://openalex.org/W2915827701","https://openalex.org/W6674868026"],"related_works":["https://openalex.org/W2181465263","https://openalex.org/W3093969907","https://openalex.org/W3202725889","https://openalex.org/W2232750048","https://openalex.org/W2212726445","https://openalex.org/W4244794230","https://openalex.org/W4389712339","https://openalex.org/W2806540758","https://openalex.org/W2494533090","https://openalex.org/W3082526343"],"abstract_inverted_index":{"In":[0],"this":[1],"paper,":[2],"we":[3,108],"address":[4],"the":[5,16,38,42,68,95,119],"issue":[6],"of":[7,18,31,94,112],"automatically":[8],"adding":[9],"U-Compare":[10],"workflows":[11,29],"to":[12,20,27,37,89],"BioCatalogue":[13],"by":[14],"exploring":[15],"compatibility":[17],"UIMA":[19,87],"a":[21,55,91,98,110],"REST-like":[22],"web":[23],"service.":[24],"We":[25,53],"aim":[26],"make":[28],"consisting":[30],"state-of-the-art":[32],"text":[33,61],"mining":[34,62],"components":[35,70],"available":[36],"bioinformatics":[39],"community":[40],"without":[41],"need":[43],"for":[44,57],"any":[45],"expertise":[46],"in":[47],"programming":[48],"or":[49,71],"software":[50],"library":[51,83],"dependencies.":[52],"present":[54],"framework":[56,79],"developing":[58],"UIMA-compliant,":[59],"REST-like,":[60],"services":[63],"which":[64,115],"can":[65],"either":[66],"supplement":[67],"existing":[69],"be":[72],"used":[73],"as":[74],"bespoke,":[75],"stand-alone":[76],"workflows.":[77],"The":[78],"embodies":[80],"U-Compare's":[81],"component":[82,93],"and":[84,102],"refactors":[85],"Apache":[86],"SimpleServer":[88],"provide":[90],"post-processing":[92],"analysis":[96],"results,":[97],"human-readable":[99],"access":[100],"mechanism,":[101],"documentation":[103],"templates.":[104],"As":[105],"an":[106],"application,":[107],"implemented":[109],"number":[111],"new":[113],"services,":[114],"are":[116],"registered":[117],"with":[118],"BioCatalogue.":[120]},"counts_by_year":[{"year":2016,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2012,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
