{"id":"https://openalex.org/W2062061945","doi":"https://doi.org/10.1145/2166896.2166912","title":"BioSPARQL","display_name":"BioSPARQL","publication_year":2011,"publication_date":"2011-12-07","ids":{"openalex":"https://openalex.org/W2062061945","doi":"https://doi.org/10.1145/2166896.2166912","mag":"2062061945"},"language":"en","primary_location":{"id":"doi:10.1145/2166896.2166912","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2166896.2166912","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 4th International Workshop on Semantic Web Applications and Tools for the Life Sciences","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5056616525","display_name":"Norio Kobayashi","orcid":"https://orcid.org/0009-0007-8718-6010"},"institutions":[{"id":"https://openalex.org/I4210150921","display_name":"RIKEN Center for Integrative Medical Sciences","ror":"https://ror.org/04mb6s476","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210150921"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Norio Kobayashi","raw_affiliation_strings":["RIKEN, Suehiro, Tsurumi, Yokohama, Kanagawa, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"RIKEN, Suehiro, Tsurumi, Yokohama, Kanagawa, Japan","institution_ids":["https://openalex.org/I4210150921"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5071431815","display_name":"Tetsuro Toyoda","orcid":null},"institutions":[{"id":"https://openalex.org/I4210150921","display_name":"RIKEN Center for Integrative Medical Sciences","ror":"https://ror.org/04mb6s476","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210150921"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Tetsuro Toyoda","raw_affiliation_strings":["RIKEN, Suehiro, Tsurumi, Yokohama, Kanagawa, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"RIKEN, Suehiro, Tsurumi, Yokohama, Kanagawa, Japan","institution_ids":["https://openalex.org/I4210150921"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I4210150921"],"apc_list":null,"apc_paid":null,"fwci":0.9941,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.78508949,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"47","last_page":"49"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9872000217437744,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sparql","display_name":"SPARQL","score":0.9806203842163086},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8482239246368408},{"id":"https://openalex.org/keywords/rdf","display_name":"RDF","score":0.757642388343811},{"id":"https://openalex.org/keywords/rdf-query-language","display_name":"RDF query language","score":0.6933952569961548},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.636459469795227},{"id":"https://openalex.org/keywords/linked-data","display_name":"Linked data","score":0.5960882902145386},{"id":"https://openalex.org/keywords/rdf-schema","display_name":"RDF Schema","score":0.5589842200279236},{"id":"https://openalex.org/keywords/query-language","display_name":"Query language","score":0.5176880359649658},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.5052533745765686},{"id":"https://openalex.org/keywords/schema","display_name":"Schema (genetic algorithms)","score":0.46156612038612366},{"id":"https://openalex.org/keywords/named-graph","display_name":"Named graph","score":0.4517766833305359},{"id":"https://openalex.org/keywords/web-ontology-language","display_name":"Web Ontology Language","score":0.41500210762023926},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.33402490615844727},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.30500876903533936},{"id":"https://openalex.org/keywords/web-search-query","display_name":"Web search query","score":0.29580891132354736},{"id":"https://openalex.org/keywords/web-query-classification","display_name":"Web query classification","score":0.24052226543426514},{"id":"https://openalex.org/keywords/search-engine","display_name":"Search engine","score":0.11047542095184326}],"concepts":[{"id":"https://openalex.org/C41009113","wikidata":"https://www.wikidata.org/wiki/Q54871","display_name":"SPARQL","level":4,"score":0.9806203842163086},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8482239246368408},{"id":"https://openalex.org/C147497476","wikidata":"https://www.wikidata.org/wiki/Q54872","display_name":"RDF","level":3,"score":0.757642388343811},{"id":"https://openalex.org/C96956885","wikidata":"https://www.wikidata.org/wiki/Q6138701","display_name":"RDF query language","level":5,"score":0.6933952569961548},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.636459469795227},{"id":"https://openalex.org/C69075417","wikidata":"https://www.wikidata.org/wiki/Q515701","display_name":"Linked data","level":3,"score":0.5960882902145386},{"id":"https://openalex.org/C15657843","wikidata":"https://www.wikidata.org/wiki/Q1751819","display_name":"RDF Schema","level":5,"score":0.5589842200279236},{"id":"https://openalex.org/C192028432","wikidata":"https://www.wikidata.org/wiki/Q845739","display_name":"Query language","level":2,"score":0.5176880359649658},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.5052533745765686},{"id":"https://openalex.org/C52146309","wikidata":"https://www.wikidata.org/wiki/Q7431116","display_name":"Schema (genetic algorithms)","level":2,"score":0.46156612038612366},{"id":"https://openalex.org/C110893760","wikidata":"https://www.wikidata.org/wiki/Q3115590","display_name":"Named graph","level":5,"score":0.4517766833305359},{"id":"https://openalex.org/C101230327","wikidata":"https://www.wikidata.org/wiki/Q826165","display_name":"Web Ontology Language","level":3,"score":0.41500210762023926},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.33402490615844727},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.30500876903533936},{"id":"https://openalex.org/C164120249","wikidata":"https://www.wikidata.org/wiki/Q995982","display_name":"Web search query","level":3,"score":0.29580891132354736},{"id":"https://openalex.org/C118689300","wikidata":"https://www.wikidata.org/wiki/Q7978614","display_name":"Web query classification","level":4,"score":0.24052226543426514},{"id":"https://openalex.org/C97854310","wikidata":"https://www.wikidata.org/wiki/Q19541","display_name":"Search engine","level":2,"score":0.11047542095184326},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/2166896.2166912","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2166896.2166912","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 4th International Workshop on Semantic Web Applications and Tools for the Life Sciences","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":4,"referenced_works":["https://openalex.org/W2110732896","https://openalex.org/W2117202466","https://openalex.org/W2165428180","https://openalex.org/W2166752826"],"related_works":["https://openalex.org/W2416869599","https://openalex.org/W3086848874","https://openalex.org/W2363838908","https://openalex.org/W2079781157","https://openalex.org/W3033347047","https://openalex.org/W3150241097","https://openalex.org/W2105571961","https://openalex.org/W2092512344","https://openalex.org/W42434468","https://openalex.org/W2162226"],"abstract_inverted_index":{"Building":[0],"an":[1,79,90],"efficient":[2],"SPAQRL":[3],"query":[4,43,49,74,176,201],"over":[5,63,89],"the":[6,20,53,59,82,198],"great":[7],"variety":[8],"of":[9,81,128,138,142],"copious":[10],"bio-medical":[11,95],"Linked":[12],"Open":[13],"Data":[14],"(LOD)":[15],"requires":[16],"users":[17],"to":[18,29,39,67,179,196,204],"understand":[19],"data":[21,65,112,121,140,160,171,192,205],"schema,":[22],"and":[23,134,163],"makes":[24],"it":[25,151],"difficult":[26],"for":[27],"biologists":[28],"handle":[30],"such":[31],"data.":[32],"To":[33,145],"address":[34],"this":[35],"problem,":[36],"we":[37],"challenge":[38],"realise":[40],"a":[41,47,136,149,153,183],"SPARQL":[42,73,175],"builder":[44,75],"that":[45,157],"generates":[46,86],"structurally-optimised":[48,87],"by":[50,97,131,165],"logically":[51,98],"analysing":[52,99,166],"target":[54],"RDF/OWL":[55,64,93],"data;":[56],"but":[57],"still":[58],"corresponding":[60,168,189],"unifying":[61],"logic":[62],"needs":[66],"be":[68,180],"implemented.":[69],"An":[70],"ontology-based":[71],"smart":[72],"named":[76,108],"Bio-SPARQL":[77,85,104],"is":[78,177],"implementation":[80],"needed":[83],"logic.":[84],"queries":[88],"ontologically":[91],"classified":[92],"based":[94],"LOD":[96,111,139],"their":[100],"semantic":[101],"graph":[102],"structure.":[103,172],"employs":[105],"our":[106],"database":[107],"BioLOD":[109,170,191],"having":[110],"sets":[113],"categorised":[114],"in":[115,147,182,194],"744":[116],"classes":[117],"with":[118,187],"7.88":[119],"million":[120],"items":[122],"(instances)":[123],"integrated":[124],"public":[125],"various":[126],"types":[127],"omic":[129],"databases":[130],"human":[132],"curation":[133],"provides":[135,152],"set":[137],"files":[141,193],"each":[143],"class.":[144],"aid":[146],"writing":[148],"query,":[150],"graphical":[154],"user":[155],"interface":[156],"suggests":[158],"possible":[159],"path":[161],"schema":[162],"filters":[164],"its":[167,188],"ontological":[169],"The":[173],"generated":[174],"designed":[178],"performed":[181],"user's":[184],"local":[185],"environment":[186],"downloaded":[190],"order":[195],"control":[197],"influence":[199],"on":[200],"results":[202],"due":[203],"updates.":[206]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2016-06-24T00:00:00"}
