{"id":"https://openalex.org/W1998242186","doi":"https://doi.org/10.1145/2166896.2166903","title":"OPPL-Galaxy","display_name":"OPPL-Galaxy","publication_year":2011,"publication_date":"2011-12-07","ids":{"openalex":"https://openalex.org/W1998242186","doi":"https://doi.org/10.1145/2166896.2166903","mag":"1998242186"},"language":"en","primary_location":{"id":"doi:10.1145/2166896.2166903","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2166896.2166903","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 4th International Workshop on Semantic Web Applications and Tools for the Life Sciences","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5090216571","display_name":"Mikel Ega\u00f1a Aranguren","orcid":"https://orcid.org/0000-0001-8081-1839"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Mikel Ega\u00f1a Aranguren","raw_affiliation_strings":["Ontology Engineering Group, School of Computer Science, UPM, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ontology Engineering Group, School of Computer Science, UPM, Spain","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086790858","display_name":"Jesualdo Tom\u00e1s Fern\u00e1ndez\u2010Breis","orcid":"https://orcid.org/0000-0002-7558-2880"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jesualdo Tom\u00e1s Fern\u00e1ndez-Breis","raw_affiliation_strings":["School of Computer Science, UM, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, UM, Spain","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5059590876","display_name":"Erick Antezana","orcid":"https://orcid.org/0000-0002-2497-8236"},"institutions":[{"id":"https://openalex.org/I204778367","display_name":"Norwegian University of Science and Technology","ror":"https://ror.org/05xg72x27","country_code":"NO","type":"education","lineage":["https://openalex.org/I204778367"]},{"id":"https://openalex.org/I4210165875","display_name":"NTNU Samfunnsforskning","ror":"https://ror.org/05pv30e80","country_code":"NO","type":"facility","lineage":["https://openalex.org/I4210165875"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Erick Antezana","raw_affiliation_strings":["NTNU, Norway","NTNU, Norway#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NTNU, Norway","institution_ids":["https://openalex.org/I4210165875"]},{"raw_affiliation_string":"NTNU, Norway#TAB#","institution_ids":["https://openalex.org/I204778367"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.9882,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.85452833,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"12","last_page":"19"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9902999997138977,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7622635364532471},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.668582558631897},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.6059935092926025},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.5758938789367676},{"id":"https://openalex.org/keywords/open-biomedical-ontologies","display_name":"Open Biomedical Ontologies","score":0.529430627822876},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.4622267484664917},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.40301287174224854},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.39046722650527954},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.36036860942840576},{"id":"https://openalex.org/keywords/ontology-based-data-integration","display_name":"Ontology-based data integration","score":0.22108766436576843},{"id":"https://openalex.org/keywords/ontology-alignment","display_name":"Ontology alignment","score":0.2000567615032196},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.08400213718414307}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7622635364532471},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.668582558631897},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.6059935092926025},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.5758938789367676},{"id":"https://openalex.org/C137982476","wikidata":"https://www.wikidata.org/wiki/Q7072326","display_name":"Open Biomedical Ontologies","level":5,"score":0.529430627822876},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.4622267484664917},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.40301287174224854},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.39046722650527954},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.36036860942840576},{"id":"https://openalex.org/C22550185","wikidata":"https://www.wikidata.org/wiki/Q7095047","display_name":"Ontology-based data integration","level":3,"score":0.22108766436576843},{"id":"https://openalex.org/C98893333","wikidata":"https://www.wikidata.org/wiki/Q4339878","display_name":"Ontology alignment","level":4,"score":0.2000567615032196},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.08400213718414307},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/2166896.2166903","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2166896.2166903","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 4th International Workshop on Semantic Web Applications and Tools for the Life Sciences","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/12","display_name":"Responsible consumption and production","score":0.49000000953674316}],"awards":[{"id":"https://openalex.org/G4766224013","display_name":null,"funder_award_id":"TIN2010-21388-C02-02","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"}],"funders":[{"id":"https://openalex.org/F4320322930","display_name":"Ministerio de Ciencia e Innovaci\u00f3n","ror":"https://ror.org/034900433"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":27,"referenced_works":["https://openalex.org/W1498424588","https://openalex.org/W1529246548","https://openalex.org/W1564494788","https://openalex.org/W1568349464","https://openalex.org/W1822529710","https://openalex.org/W1838034317","https://openalex.org/W1972077901","https://openalex.org/W1993010157","https://openalex.org/W2007622742","https://openalex.org/W2016602738","https://openalex.org/W2062296737","https://openalex.org/W2099218891","https://openalex.org/W2103017472","https://openalex.org/W2103355425","https://openalex.org/W2107643858","https://openalex.org/W2108491719","https://openalex.org/W2111306015","https://openalex.org/W2113142309","https://openalex.org/W2136482257","https://openalex.org/W2137428218","https://openalex.org/W2140157849","https://openalex.org/W2150245022","https://openalex.org/W2155842211","https://openalex.org/W2963945573","https://openalex.org/W2993373113","https://openalex.org/W6633616128","https://openalex.org/W6652305469"],"related_works":["https://openalex.org/W2127299687","https://openalex.org/W1506177826","https://openalex.org/W2532736362","https://openalex.org/W2726617685","https://openalex.org/W1562796463","https://openalex.org/W3135477004","https://openalex.org/W1530162452","https://openalex.org/W2111194626","https://openalex.org/W2008629522","https://openalex.org/W2794019507"],"abstract_inverted_index":{"Biomedical":[0],"ontologies":[1,46,103],"are":[2],"key":[3],"to":[4,18,43,89,101,124],"the":[5,39,55,69,96,109],"success":[6],"of":[7,75,92,129],"Semantic":[8],"Web":[9],"technologies":[10],"in":[11,52,114,138],"Life":[12],"Sciences;":[13],"therefore,":[14],"it":[15],"is":[16],"important":[17],"provide":[19],"appropriate":[20],"tools":[21,110],"for":[22,37,68,80],"their":[23],"development":[24],"and":[25,72,111],"further":[26],"exploitation.":[27],"The":[28],"Ontology":[29],"Pre":[30],"Processor":[31],"Language":[32],"(OPPL)":[33],"can":[34,104,121],"be":[35,105,122],"used":[36,123],"automating":[38],"complex":[40],"manipulation":[41],"needed":[42],"devise":[44],"biomedical":[45,140],"with":[47,108],"richer":[48],"axiomatic":[49],"content,":[50],"which":[51],"turn":[53],"pave":[54],"way":[56],"towards":[57],"advanced":[58],"biological":[59,130,135],"data":[60],"analyses.":[61],"We":[62],"present":[63],"OPPL-Galaxy,":[64],"an":[65,86],"OPPL":[66,100],"wrapper":[67],"Galaxy":[70,84],"platform,":[71],"a":[73,117],"series":[74],"examples":[76],"demonstrating":[77],"its":[78],"functionality":[79,97],"enriching":[81],"ontologies.":[82,141],"As":[83,116],"provides":[85],"integrated":[87],"framework":[88],"make":[90],"use":[91],"various":[93],"bioinformatics":[94],"tools,":[95],"delivered":[98],"by":[99,132],"manipulate":[102],"combined":[106],"along":[107],"workflows":[112,120],"devised":[113],"Galaxy.":[115],"result,":[118],"those":[119],"perform":[125],"more":[126],"thorough":[127],"analyses":[128],"information":[131],"exploiting":[133],"extant":[134],"knowledge":[136],"codified":[137],"(enriched)":[139]},"counts_by_year":[{"year":2014,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2016-06-24T00:00:00"}
