{"id":"https://openalex.org/W2143811628","doi":"https://doi.org/10.1145/2166896.2166899","title":"Genome design with the semantic web","display_name":"Genome design with the semantic web","publication_year":2011,"publication_date":"2011-12-07","ids":{"openalex":"https://openalex.org/W2143811628","doi":"https://doi.org/10.1145/2166896.2166899","mag":"2143811628"},"language":"en","primary_location":{"id":"doi:10.1145/2166896.2166899","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2166896.2166899","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 4th International Workshop on Semantic Web Applications and Tools for the Life Sciences","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5042765353","display_name":"Robert Sidney Cox","orcid":"https://orcid.org/0000-0002-2009-6236"},"institutions":[{"id":"https://openalex.org/I4210150921","display_name":"RIKEN Center for Integrative Medical Sciences","ror":"https://ror.org/04mb6s476","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210150921"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Robert Sidney Cox","raw_affiliation_strings":["RIKEN Yokohama Institute, Suehiro-cho Tsurumi, Yokohama, Kanagawa, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"RIKEN Yokohama Institute, Suehiro-cho Tsurumi, Yokohama, Kanagawa, Japan","institution_ids":["https://openalex.org/I4210150921"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5071431815","display_name":"Tetsuro Toyoda","orcid":null},"institutions":[{"id":"https://openalex.org/I4210150921","display_name":"RIKEN Center for Integrative Medical Sciences","ror":"https://ror.org/04mb6s476","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210150921"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Tetsuro Toyoda","raw_affiliation_strings":["RIKEN Yokohama Institute, Suehiro-cho Tsurumi, Yokohama, Kanagawa, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"RIKEN Yokohama Institute, Suehiro-cho Tsurumi, Yokohama, Kanagawa, Japan","institution_ids":["https://openalex.org/I4210150921"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I4210150921"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.22271565,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"4","last_page":"5"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10878","display_name":"CRISPR and Genetic Engineering","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7252311110496521},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.6694566011428833},{"id":"https://openalex.org/keywords/social-semantic-web","display_name":"Social Semantic Web","score":0.6200906038284302},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5571491718292236},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.47969695925712585},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.47041991353034973},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.4228755831718445},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.3593624234199524},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.18780484795570374},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.15894773602485657},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.11054566502571106}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7252311110496521},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.6694566011428833},{"id":"https://openalex.org/C534406577","wikidata":"https://www.wikidata.org/wiki/Q7550843","display_name":"Social Semantic Web","level":3,"score":0.6200906038284302},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5571491718292236},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.47969695925712585},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.47041991353034973},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.4228755831718445},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.3593624234199524},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.18780484795570374},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.15894773602485657},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.11054566502571106},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/2166896.2166899","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2166896.2166899","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 4th International Workshop on Semantic Web Applications and Tools for the Life Sciences","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":18,"referenced_works":["https://openalex.org/W1605442704","https://openalex.org/W1971439989","https://openalex.org/W1982834739","https://openalex.org/W1984248485","https://openalex.org/W1987602805","https://openalex.org/W1993180856","https://openalex.org/W1996554707","https://openalex.org/W2026867279","https://openalex.org/W2029370898","https://openalex.org/W2047882868","https://openalex.org/W2057993765","https://openalex.org/W2101506009","https://openalex.org/W2109906206","https://openalex.org/W2123171788","https://openalex.org/W2134061908","https://openalex.org/W2142688660","https://openalex.org/W2159230317","https://openalex.org/W4399406320"],"related_works":["https://openalex.org/W2416704114","https://openalex.org/W2349698472","https://openalex.org/W1975429881","https://openalex.org/W2366430559","https://openalex.org/W2013055153","https://openalex.org/W1985801232","https://openalex.org/W2025728896","https://openalex.org/W1585941060","https://openalex.org/W2174306336","https://openalex.org/W2355823470"],"abstract_inverted_index":{"Advances":[0],"in":[1],"DNA":[2,29],"synthesis":[3],"technology":[4],"have":[5],"enabled":[6],"the":[7,16,28,52],"design":[8,20,30,41],"of":[9,18],"novel":[10],"genomes.":[11],"Semantic":[12],"web":[13,54],"will":[14],"improve":[15],"capability":[17],"genome":[19,40],"tools":[21],"for":[22,39,48],"integrating":[23],"experimental":[24],"data":[25],"to":[26],"guide":[27],"process.":[31],"Here":[32],"we":[33],"review":[34],"software":[35],"tools,":[36],"suggest":[37],"guidelines":[38],"software,":[42],"and":[43],"present":[44],"GenoCODE:":[45],"a":[46],"program":[47],"designing":[49],"genomes":[50],"using":[51],"semantic":[53],"SciNetS.":[55]},"counts_by_year":[],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
