{"id":"https://openalex.org/W2079961040","doi":"https://doi.org/10.1145/2147805.2147914","title":"Towards an OWL-based framework for extracting information from clinical texts","display_name":"Towards an OWL-based framework for extracting information from clinical texts","publication_year":2011,"publication_date":"2011-08-01","ids":{"openalex":"https://openalex.org/W2079961040","doi":"https://doi.org/10.1145/2147805.2147914","mag":"2079961040"},"language":"en","primary_location":{"id":"doi:10.1145/2147805.2147914","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2147805.2147914","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2nd ACM Conference on Bioinformatics, Computational Biology and Biomedicine","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5046535750","display_name":"Nate Blaylock","orcid":null},"institutions":[{"id":"https://openalex.org/I1335578998","display_name":"Florida Institute for Human and Machine Cognition","ror":"https://ror.org/02napvw46","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1335578998"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Nate Blaylock","raw_affiliation_strings":["Florida Institute for Human and Machine Cognition (IHMC), Pensacola, Florida","Florida Institute for Human and Machine Cognition (IHMC), Pensacola, Florida#TAB#"],"affiliations":[{"raw_affiliation_string":"Florida Institute for Human and Machine Cognition (IHMC), Pensacola, Florida","institution_ids":["https://openalex.org/I1335578998"]},{"raw_affiliation_string":"Florida Institute for Human and Machine Cognition (IHMC), Pensacola, Florida#TAB#","institution_ids":["https://openalex.org/I1335578998"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014639072","display_name":"William de Beaumont","orcid":null},"institutions":[{"id":"https://openalex.org/I1335578998","display_name":"Florida Institute for Human and Machine Cognition","ror":"https://ror.org/02napvw46","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1335578998"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"William de Beaumont","raw_affiliation_strings":["Florida Institute for Human and Machine Cognition (IHMC), Pensacola, Florida","Florida Institute for Human and Machine Cognition (IHMC), Pensacola, Florida#TAB#"],"affiliations":[{"raw_affiliation_string":"Florida Institute for Human and Machine Cognition (IHMC), Pensacola, Florida","institution_ids":["https://openalex.org/I1335578998"]},{"raw_affiliation_string":"Florida Institute for Human and Machine Cognition (IHMC), Pensacola, Florida#TAB#","institution_ids":["https://openalex.org/I1335578998"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090002679","display_name":"James F. Allen","orcid":"https://orcid.org/0000-0003-4543-5457"},"institutions":[{"id":"https://openalex.org/I1335578998","display_name":"Florida Institute for Human and Machine Cognition","ror":"https://ror.org/02napvw46","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1335578998"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"James Allen","raw_affiliation_strings":["Florida Institute for Human and Machine Cognition (IHMC), Pensacola, Florida","Florida Institute for Human and Machine Cognition (IHMC), Pensacola, Florida#TAB#"],"affiliations":[{"raw_affiliation_string":"Florida Institute for Human and Machine Cognition (IHMC), Pensacola, Florida","institution_ids":["https://openalex.org/I1335578998"]},{"raw_affiliation_string":"Florida Institute for Human and Machine Cognition (IHMC), Pensacola, Florida#TAB#","institution_ids":["https://openalex.org/I1335578998"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5109885777","display_name":"Hyuckchul Jung","orcid":null},"institutions":[{"id":"https://openalex.org/I1335578998","display_name":"Florida Institute for Human and Machine Cognition","ror":"https://ror.org/02napvw46","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1335578998"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hyuckchul Jung","raw_affiliation_strings":["Florida Institute for Human and Machine Cognition (IHMC), Pensacola, Florida","Florida Institute for Human and Machine Cognition (IHMC), Pensacola, Florida#TAB#"],"affiliations":[{"raw_affiliation_string":"Florida Institute for Human and Machine Cognition (IHMC), Pensacola, Florida","institution_ids":["https://openalex.org/I1335578998"]},{"raw_affiliation_string":"Florida Institute for Human and Machine Cognition (IHMC), Pensacola, Florida#TAB#","institution_ids":["https://openalex.org/I1335578998"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5046535750"],"corresponding_institution_ids":["https://openalex.org/I1335578998"],"apc_list":null,"apc_paid":null,"fwci":0.4276,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.72568488,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"636","last_page":"640"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8822793960571289},{"id":"https://openalex.org/keywords/semantic-web-rule-language","display_name":"Semantic Web Rule Language","score":0.8142203092575073},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.7113887667655945},{"id":"https://openalex.org/keywords/owl-s","display_name":"OWL-S","score":0.7004857659339905},{"id":"https://openalex.org/keywords/web-ontology-language","display_name":"Web Ontology Language","score":0.691494882106781},{"id":"https://openalex.org/keywords/timeline","display_name":"Timeline","score":0.6376204490661621},{"id":"https://openalex.org/keywords/parsing","display_name":"Parsing","score":0.6025801301002502},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.5934523344039917},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5825918912887573},{"id":"https://openalex.org/keywords/semantic-web-stack","display_name":"Semantic Web Stack","score":0.5545300841331482},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.5364710688591003},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.4940784275531769},{"id":"https://openalex.org/keywords/open-biomedical-ontologies","display_name":"Open Biomedical Ontologies","score":0.440462201833725},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.42564767599105835},{"id":"https://openalex.org/keywords/ontology-language","display_name":"Ontology language","score":0.4204857349395752},{"id":"https://openalex.org/keywords/natural-language","display_name":"Natural language","score":0.41196635365486145},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3960992097854614},{"id":"https://openalex.org/keywords/semantic-analytics","display_name":"Semantic analytics","score":0.23240622878074646}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8822793960571289},{"id":"https://openalex.org/C71695816","wikidata":"https://www.wikidata.org/wiki/Q3478367","display_name":"Semantic Web Rule Language","level":5,"score":0.8142203092575073},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.7113887667655945},{"id":"https://openalex.org/C50382505","wikidata":"https://www.wikidata.org/wiki/Q2553356","display_name":"OWL-S","level":4,"score":0.7004857659339905},{"id":"https://openalex.org/C101230327","wikidata":"https://www.wikidata.org/wiki/Q826165","display_name":"Web Ontology Language","level":3,"score":0.691494882106781},{"id":"https://openalex.org/C4438859","wikidata":"https://www.wikidata.org/wiki/Q186117","display_name":"Timeline","level":2,"score":0.6376204490661621},{"id":"https://openalex.org/C186644900","wikidata":"https://www.wikidata.org/wiki/Q194152","display_name":"Parsing","level":2,"score":0.6025801301002502},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.5934523344039917},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5825918912887573},{"id":"https://openalex.org/C167379230","wikidata":"https://www.wikidata.org/wiki/Q1026884","display_name":"Semantic Web Stack","level":3,"score":0.5545300841331482},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5364710688591003},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.4940784275531769},{"id":"https://openalex.org/C137982476","wikidata":"https://www.wikidata.org/wiki/Q7072326","display_name":"Open Biomedical Ontologies","level":5,"score":0.440462201833725},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.42564767599105835},{"id":"https://openalex.org/C61673122","wikidata":"https://www.wikidata.org/wiki/Q7095059","display_name":"Ontology language","level":3,"score":0.4204857349395752},{"id":"https://openalex.org/C195324797","wikidata":"https://www.wikidata.org/wiki/Q33742","display_name":"Natural language","level":2,"score":0.41196635365486145},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3960992097854614},{"id":"https://openalex.org/C148792806","wikidata":"https://www.wikidata.org/wiki/Q7449046","display_name":"Semantic analytics","level":4,"score":0.23240622878074646},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/2147805.2147914","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2147805.2147914","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2nd ACM Conference on Bioinformatics, Computational Biology and Biomedicine","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education","score":0.7900000214576721}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":14,"referenced_works":["https://openalex.org/W97773658","https://openalex.org/W1770613123","https://openalex.org/W1999500769","https://openalex.org/W2028776450","https://openalex.org/W2071877188","https://openalex.org/W2110444463","https://openalex.org/W2114388055","https://openalex.org/W2122402213","https://openalex.org/W2124998085","https://openalex.org/W2146089916","https://openalex.org/W2169315475","https://openalex.org/W2307731344","https://openalex.org/W2398824998","https://openalex.org/W6668471642"],"related_works":["https://openalex.org/W2475889485","https://openalex.org/W1582258607","https://openalex.org/W2501878697","https://openalex.org/W2378801232","https://openalex.org/W25470220","https://openalex.org/W1968976977","https://openalex.org/W3144865525","https://openalex.org/W1507629289","https://openalex.org/W1571531079","https://openalex.org/W17926982"],"abstract_inverted_index":{"In":[0],"this":[1,92],"paper,":[2],"we":[3],"present":[4,105],"our":[5,87],"ongoing":[6,88],"work":[7,89],"towards":[8],"an":[9],"OWL-based":[10,50],"framework":[11,25],"for":[12,63,68,94],"extracting":[13,69,95],"a":[14,27,61,81,96],"variety":[15],"of":[16,71,104,108],"information":[17,70],"(including":[18],"patient":[19,98],"history)":[20],"from":[21,73,79,101],"clinical":[22,82,109],"texts.":[23,110],"Our":[24],"integrates":[26],"well-known":[28],"natural":[29],"language":[30],"processing":[31],"(NLP)":[32],"system":[33,93],"by":[34],"converting":[35],"its":[36],"ontology":[37],"and":[38],"output":[39],"logical":[40],"form":[41],"interpretation":[42],"into":[43],"the":[44,74,102],"Web":[45,53],"Ontology":[46],"Language":[47,55],"(OWL).":[48],"The":[49],"Semantic":[51,65],"Query-Enhanced":[52],"Rule":[54],"(SQWRL)":[56],"is":[57],"then":[58],"used":[59],"as":[60],"platform":[62],"authoring":[64],"Web-aware":[66],"rules":[67],"interest":[72],"OWL":[75],"knowledge":[76],"based":[77],"created":[78],"parsing":[80],"report.":[83],"We":[84],"also":[85],"describe":[86],"on":[90],"using":[91],"timeline-based":[97],"medical":[99],"record":[100],"history":[103],"illness":[106],"section":[107]},"counts_by_year":[{"year":2015,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
