{"id":"https://openalex.org/W2055250318","doi":"https://doi.org/10.1145/2147805.2147908","title":"PRED <sup>mafa</sup>","display_name":"PRED <sup>mafa</sup>","publication_year":2011,"publication_date":"2011-08-01","ids":{"openalex":"https://openalex.org/W2055250318","doi":"https://doi.org/10.1145/2147805.2147908","mag":"2055250318"},"language":"en","primary_location":{"id":"doi:10.1145/2147805.2147908","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2147805.2147908","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2nd ACM Conference on Bioinformatics, Computational Biology and Biomedicine","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5111766989","display_name":"Guang Lan Zhang","orcid":null},"institutions":[{"id":"https://openalex.org/I4210117453","display_name":"Dana-Farber Cancer Institute","ror":"https://ror.org/02jzgtq86","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210117453"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Guang Lan Zhang","raw_affiliation_strings":["Dana-Farber Cancer Institute, Boston, MA","Dana-Farber Cancer Institute, Boston, MA#TAB#"],"affiliations":[{"raw_affiliation_string":"Dana-Farber Cancer Institute, Boston, MA","institution_ids":["https://openalex.org/I4210117453"]},{"raw_affiliation_string":"Dana-Farber Cancer Institute, Boston, MA#TAB#","institution_ids":["https://openalex.org/I136199984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055144122","display_name":"Melisa L. Budde","orcid":null},"institutions":[{"id":"https://openalex.org/I135310074","display_name":"University of Wisconsin\u2013Madison","ror":"https://ror.org/01y2jtd41","country_code":"US","type":"education","lineage":["https://openalex.org/I135310074"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Melisa L. Budde","raw_affiliation_strings":["University of Wisconsin-Madison, Wisconsin","University of Wisconsin , Madison, Wisconsin,"],"affiliations":[{"raw_affiliation_string":"University of Wisconsin-Madison, Wisconsin","institution_ids":["https://openalex.org/I135310074"]},{"raw_affiliation_string":"University of Wisconsin , Madison, Wisconsin,","institution_ids":["https://openalex.org/I135310074"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083929198","display_name":"Jennifer J. Lhost","orcid":null},"institutions":[{"id":"https://openalex.org/I135310074","display_name":"University of Wisconsin\u2013Madison","ror":"https://ror.org/01y2jtd41","country_code":"US","type":"education","lineage":["https://openalex.org/I135310074"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jennifer J. Lhost","raw_affiliation_strings":["University of Wisconsin-Madison, Wisconsin","University of Wisconsin , Madison, Wisconsin,"],"affiliations":[{"raw_affiliation_string":"University of Wisconsin-Madison, Wisconsin","institution_ids":["https://openalex.org/I135310074"]},{"raw_affiliation_string":"University of Wisconsin , Madison, Wisconsin,","institution_ids":["https://openalex.org/I135310074"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044794320","display_name":"David H. O\u2019Connor","orcid":"https://orcid.org/0000-0003-2139-470X"},"institutions":[{"id":"https://openalex.org/I135310074","display_name":"University of Wisconsin\u2013Madison","ror":"https://ror.org/01y2jtd41","country_code":"US","type":"education","lineage":["https://openalex.org/I135310074"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David H. O'Connor","raw_affiliation_strings":["University of Wisconsin-Madison, Wisconsin","University of Wisconsin , Madison, Wisconsin,"],"affiliations":[{"raw_affiliation_string":"University of Wisconsin-Madison, Wisconsin","institution_ids":["https://openalex.org/I135310074"]},{"raw_affiliation_string":"University of Wisconsin , Madison, Wisconsin,","institution_ids":["https://openalex.org/I135310074"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049102885","display_name":"William H. Hildebrand","orcid":"https://orcid.org/0000-0002-7066-4174"},"institutions":[{"id":"https://openalex.org/I27253931","display_name":"Oklahoma City University","ror":"https://ror.org/02bs0cv29","country_code":"US","type":"education","lineage":["https://openalex.org/I27253931"]},{"id":"https://openalex.org/I8692664","display_name":"University of Oklahoma","ror":"https://ror.org/02aqsxs83","country_code":"US","type":"education","lineage":["https://openalex.org/I8692664"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"William H. Hildebrand","raw_affiliation_strings":["University of Oklahoma, Oklahoma City, Oklahoma","University of Oklahoma, Oklahoma City, Oklahoma;"],"affiliations":[{"raw_affiliation_string":"University of Oklahoma, Oklahoma City, Oklahoma","institution_ids":["https://openalex.org/I27253931","https://openalex.org/I8692664"]},{"raw_affiliation_string":"University of Oklahoma, Oklahoma City, Oklahoma;","institution_ids":["https://openalex.org/I27253931","https://openalex.org/I8692664"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089063979","display_name":"Vladimir Brusi\u0107","orcid":"https://orcid.org/0000-0003-0523-5266"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I4210117453","display_name":"Dana-Farber Cancer Institute","ror":"https://ror.org/02jzgtq86","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210117453"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Vladimir Brusic","raw_affiliation_strings":["Dana-Farber Cancer Institute, Boston, MA","Dana-Farber Cancer Institute, Boston, MA#TAB#"],"affiliations":[{"raw_affiliation_string":"Dana-Farber Cancer Institute, Boston, MA","institution_ids":["https://openalex.org/I4210117453"]},{"raw_affiliation_string":"Dana-Farber Cancer Institute, Boston, MA#TAB#","institution_ids":["https://openalex.org/I136199984"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5111766989"],"corresponding_institution_ids":["https://openalex.org/I136199984","https://openalex.org/I4210117453"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.09692316,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"602","last_page":"606"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11103","display_name":"Antimicrobial Peptides and Activities","score":0.9929999709129333,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11532","display_name":"Chemokine receptors and signaling","score":0.9926999807357788,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/major-histocompatibility-complex","display_name":"Major histocompatibility complex","score":0.6350734829902649},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.560783326625824},{"id":"https://openalex.org/keywords/matrix","display_name":"Matrix (chemical analysis)","score":0.5095703601837158},{"id":"https://openalex.org/keywords/class","display_name":"Class (philosophy)","score":0.4707750976085663},{"id":"https://openalex.org/keywords/peptide","display_name":"Peptide","score":0.4353671669960022},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.40724340081214905},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.40510693192481995},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.344659686088562},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.28757238388061523},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.28071075677871704},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.23230352997779846},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.22825410962104797},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.18646007776260376}],"concepts":[{"id":"https://openalex.org/C207936829","wikidata":"https://www.wikidata.org/wiki/Q423163","display_name":"Major histocompatibility complex","level":3,"score":0.6350734829902649},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.560783326625824},{"id":"https://openalex.org/C106487976","wikidata":"https://www.wikidata.org/wiki/Q685816","display_name":"Matrix (chemical analysis)","level":2,"score":0.5095703601837158},{"id":"https://openalex.org/C2777212361","wikidata":"https://www.wikidata.org/wiki/Q5127848","display_name":"Class (philosophy)","level":2,"score":0.4707750976085663},{"id":"https://openalex.org/C2779281246","wikidata":"https://www.wikidata.org/wiki/Q172847","display_name":"Peptide","level":2,"score":0.4353671669960022},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.40724340081214905},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.40510693192481995},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.344659686088562},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.28757238388061523},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.28071075677871704},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.23230352997779846},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.22825410962104797},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.18646007776260376},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/2147805.2147908","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2147805.2147908","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2nd ACM Conference on Bioinformatics, Computational Biology and Biomedicine","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2460882775","display_name":null,"funder_award_id":"R01 5R01A1084787-02","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G2688080145","display_name":null,"funder_award_id":"R01 AI077376-01R21 AI082880-01","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337355","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":12,"referenced_works":["https://openalex.org/W1490155859","https://openalex.org/W1970989045","https://openalex.org/W1971302107","https://openalex.org/W1975541761","https://openalex.org/W1978417734","https://openalex.org/W1997509842","https://openalex.org/W2031451886","https://openalex.org/W2031768500","https://openalex.org/W2074630826","https://openalex.org/W2076542934","https://openalex.org/W2090528816","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W1526195401","https://openalex.org/W4313385292","https://openalex.org/W1759461029","https://openalex.org/W1996781584","https://openalex.org/W2126989399","https://openalex.org/W2372019020","https://openalex.org/W2086851734","https://openalex.org/W2375446917","https://openalex.org/W3134906029","https://openalex.org/W2069603249"],"abstract_inverted_index":{"PREDmafa":[0,81],"is":[1,82,96],"a":[2,72],"computational":[3,86],"system":[4,37,87],"for":[5,29,61,69,76,88],"prediction":[6,36,59,67,74],"of":[7,21,32],"peptide":[8],"binding":[9],"to":[10],"three":[11],"transcriptionally":[12],"abundant":[13],"major":[14],"histocompatibility":[15],"complex":[16],"(MHC)":[17],"class":[18],"I":[19],"alleles":[20],"Mauritian":[22],"cynomolgus":[23],"macaque,":[24],"an":[25],"important":[26],"animal":[27],"model":[28],"the":[30,83],"study":[31],"human":[33],"disease.":[34],"The":[35],"utilizes":[38],"quantitative":[39],"matrices,":[40],"which":[41],"were":[42],"validated":[43],"using":[44],"experimentally":[45],"determined":[46],"binders":[47],"and":[48,57,65,71],"supported":[49],"by":[50],"in":[51],"vivo":[52],"studies.":[53],"We":[54],"developed":[55],"8-mer":[56],"9-mer":[58,73],"matrices":[60,68],"Mafa-A1*063:02,":[62],"9-mer,":[63],"10-mer,":[64],"11-mer":[66],"Mafa-B*011:01,":[70],"matrix":[75],"Mafa-B*075:01.":[77],"To":[78],"our":[79],"knowledge,":[80],"first":[84],"online":[85],"predicting":[89],"peptides":[90],"that":[91],"bind":[92],"Mafa":[93],"molecules.":[94],"It":[95],"available":[97],"at":[98],"http://cvc.dfci.harvard.edu/mafa/.":[99]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
