{"id":"https://openalex.org/W2121447883","doi":"https://doi.org/10.1145/2110497.2110503","title":"Optimizing bioinformatics workflows for data analysis using cloud management techniques","display_name":"Optimizing bioinformatics workflows for data analysis using cloud management techniques","publication_year":2011,"publication_date":"2011-11-14","ids":{"openalex":"https://openalex.org/W2121447883","doi":"https://doi.org/10.1145/2110497.2110503","mag":"2121447883"},"language":"en","primary_location":{"id":"doi:10.1145/2110497.2110503","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2110497.2110503","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 6th workshop on Workflows in support of large-scale science","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5070685713","display_name":"Vincent C. Emeakaroha","orcid":"https://orcid.org/0000-0001-7869-2885"},"institutions":[{"id":"https://openalex.org/I145847075","display_name":"TU Wien","ror":"https://ror.org/04d836q62","country_code":"AT","type":"education","lineage":["https://openalex.org/I145847075"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Vincent C. Emeakaroha","raw_affiliation_strings":["Vienna University of Technology, Vienna, Austria","Vienna University of technology, Vienna, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Vienna University of Technology, Vienna, Austria","institution_ids":["https://openalex.org/I145847075"]},{"raw_affiliation_string":"Vienna University of technology, Vienna, Austria","institution_ids":["https://openalex.org/I145847075"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030132985","display_name":"Pawe\u0142 P. \u0141abaj","orcid":"https://orcid.org/0000-0002-4994-0234"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Pawe\u0142 P. \u0141abaj","raw_affiliation_strings":["Boku University Vienna, Vienna, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Boku University Vienna, Vienna, Austria","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112169384","display_name":"Michael Maurer","orcid":null},"institutions":[{"id":"https://openalex.org/I145847075","display_name":"TU Wien","ror":"https://ror.org/04d836q62","country_code":"AT","type":"education","lineage":["https://openalex.org/I145847075"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Michael Maurer","raw_affiliation_strings":["Vienna University of Technology, Vienna, Austria","Vienna University of technology, Vienna, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Vienna University of Technology, Vienna, Austria","institution_ids":["https://openalex.org/I145847075"]},{"raw_affiliation_string":"Vienna University of technology, Vienna, Austria","institution_ids":["https://openalex.org/I145847075"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009158531","display_name":"Ivona Brandi\u0107","orcid":"https://orcid.org/0000-0001-7424-0208"},"institutions":[{"id":"https://openalex.org/I145847075","display_name":"TU Wien","ror":"https://ror.org/04d836q62","country_code":"AT","type":"education","lineage":["https://openalex.org/I145847075"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Ivona Brandic","raw_affiliation_strings":["Vienna University of Technology, Vienna, Austria","Vienna University of technology, Vienna, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Vienna University of Technology, Vienna, Austria","institution_ids":["https://openalex.org/I145847075"]},{"raw_affiliation_string":"Vienna University of technology, Vienna, Austria","institution_ids":["https://openalex.org/I145847075"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5076046328","display_name":"David P. Kreil","orcid":"https://orcid.org/0000-0001-7538-2056"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"David P. Kreil","raw_affiliation_strings":["Boku University Vienna, Vienna, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Boku University Vienna, Vienna, Austria","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":14,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"37","last_page":"46"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10101","display_name":"Cloud Computing and Resource Management","score":0.9922999739646912,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.8744782209396362},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8171743154525757},{"id":"https://openalex.org/keywords/workflow-management-system","display_name":"Workflow management system","score":0.7637226581573486},{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.7277873158454895},{"id":"https://openalex.org/keywords/workflow-technology","display_name":"Workflow technology","score":0.6871291399002075},{"id":"https://openalex.org/keywords/workflow-engine","display_name":"Workflow engine","score":0.626842737197876},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5291889905929565},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.5116062760353088},{"id":"https://openalex.org/keywords/resource-management","display_name":"Resource management (computing)","score":0.46508994698524475},{"id":"https://openalex.org/keywords/data-management","display_name":"Data management","score":0.4181329905986786},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.41649532318115234},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.3770793378353119},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.35176846385002136},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.34471914172172546},{"id":"https://openalex.org/keywords/systems-engineering","display_name":"Systems engineering","score":0.2025129497051239},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.09714493155479431}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.8744782209396362},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8171743154525757},{"id":"https://openalex.org/C140824633","wikidata":"https://www.wikidata.org/wiki/Q2808660","display_name":"Workflow management system","level":3,"score":0.7637226581573486},{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.7277873158454895},{"id":"https://openalex.org/C19612761","wikidata":"https://www.wikidata.org/wiki/Q8034836","display_name":"Workflow technology","level":3,"score":0.6871291399002075},{"id":"https://openalex.org/C188220564","wikidata":"https://www.wikidata.org/wiki/Q3325097","display_name":"Workflow engine","level":3,"score":0.626842737197876},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5291889905929565},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.5116062760353088},{"id":"https://openalex.org/C2780609101","wikidata":"https://www.wikidata.org/wiki/Q17156588","display_name":"Resource management (computing)","level":2,"score":0.46508994698524475},{"id":"https://openalex.org/C1668388","wikidata":"https://www.wikidata.org/wiki/Q1149776","display_name":"Data management","level":2,"score":0.4181329905986786},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.41649532318115234},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.3770793378353119},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.35176846385002136},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.34471914172172546},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.2025129497051239},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.09714493155479431},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1145/2110497.2110503","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2110497.2110503","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 6th workshop on Workflows in support of large-scale science","raw_type":"proceedings-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.713.2770","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.713.2770","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.infosys.tuwien.ac.at/staff/vincent/pub/Works11-Emeakaroha.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Decent work and economic growth","score":0.44999998807907104,"id":"https://metadata.un.org/sdg/8"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320323863","display_name":"Austrian Institute of Technology","ror":"https://ror.org/04knbh022"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":32,"referenced_works":["https://openalex.org/W48417026","https://openalex.org/W1493613888","https://openalex.org/W1868460409","https://openalex.org/W1887454931","https://openalex.org/W1911635540","https://openalex.org/W1968337304","https://openalex.org/W1977367431","https://openalex.org/W1990911977","https://openalex.org/W2000729083","https://openalex.org/W2005112508","https://openalex.org/W2023028646","https://openalex.org/W2030481825","https://openalex.org/W2073536358","https://openalex.org/W2097042472","https://openalex.org/W2097065948","https://openalex.org/W2108234281","https://openalex.org/W2119748718","https://openalex.org/W2123663722","https://openalex.org/W2124985265","https://openalex.org/W2129666400","https://openalex.org/W2134522095","https://openalex.org/W2136482257","https://openalex.org/W2137653635","https://openalex.org/W2140919237","https://openalex.org/W2141446589","https://openalex.org/W2150424267","https://openalex.org/W2152652423","https://openalex.org/W2154983209","https://openalex.org/W2163871842","https://openalex.org/W2168112441","https://openalex.org/W2170543835","https://openalex.org/W2171794579"],"related_works":["https://openalex.org/W2379425324","https://openalex.org/W2373541195","https://openalex.org/W2376410910","https://openalex.org/W2091596831","https://openalex.org/W2365658322","https://openalex.org/W2352344200","https://openalex.org/W329008868","https://openalex.org/W2367975678","https://openalex.org/W2375552622","https://openalex.org/W2906819665"],"abstract_inverted_index":{"With":[0],"the":[1,11,121,144,195],"rapid":[2],"development":[3],"in":[4,10,23,28,39,55,70,182],"recent":[5],"years":[6],"of":[7,16,35,123,148,157,198,219],"high-throughput":[8],"technologies":[9],"life":[12],"sciences,":[13],"huge":[14],"amounts":[15],"data":[17,38,62],"are":[18,94,140],"being":[19],"generated":[20],"and":[21,31,64,83,128,137,155,170,189,211],"stored":[22],"databases.":[24],"Despite":[25],"significant":[26],"advances":[27],"computing":[29,115],"capacity":[30],"performance,":[32],"an":[33],"analysis":[34],"these":[36,199],"large-scale":[37],"a":[40,47,77,152,164,171,217],"search":[41],"for":[42,151,179],"biomedically":[43],"relevant":[44],"patterns":[45],"remains":[46],"challenging":[48],"task.":[49],"Scientific":[50],"workflow":[51,74,92,124,149,180,209],"applications":[52,86,93,150,181],"support":[53],"data-mining":[54],"more":[56],"complex":[57],"scenarios":[58],"that":[59,80],"include":[60],"many":[61],"sources":[63],"computational":[65,105,118,177],"tools,":[66],"as":[67,110,216],"commonly":[68],"found":[69],"bioinformatics.":[71],"A":[72],"scientific":[73,85,208],"application":[75],"is":[76],"holistic":[78],"unit":[79],"defines,":[81],"executes,":[82],"manages":[84],"using":[87],"different":[88],"software":[89],"tools.":[90],"Existing":[91],"process-":[95],"or":[96],"data-":[97],"rather":[98],"than":[99],"resource-oriented.":[100],"Thus,":[101],"they":[102,203],"lack":[103],"efficient":[104],"resource":[106,135,145,167],"management":[107,138,173],"capabilities,":[108],"such":[109],"those":[111],"provided":[112],"by":[113],"Cloud":[114,166],"environments.":[116],"Insufficient":[117],"resources":[119,178],"disrupt":[120],"execution":[122],"applications,":[125,210],"wasting":[126],"time":[127],"money.":[129],"To":[130],"address":[131],"this":[132,160],"issue,":[133],"advanced":[134],"monitoring":[136,168],"strategies":[139],"required":[141],"to":[142,175,184,207],"determine":[143],"consumption":[146],"behaviours":[147],"dynamical":[153],"allocation":[154],"deallocation":[156],"resources.":[158],"In":[159],"paper,":[161],"we":[162],"present":[163,194,212],"novel":[165],"technique":[169],"knowledge":[172],"strategy":[174],"manage":[176],"order":[183],"guarantee":[185],"their":[186,190],"performance":[187],"goals":[188],"successful":[191],"completion.":[192],"We":[193],"design":[196],"description":[197],"techniques,":[200],"demonstrate":[201],"how":[202],"can":[204],"be":[205],"applied":[206],"first":[213],"evaluation":[214],"results":[215],"proof":[218],"concept.":[220]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":3}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
