{"id":"https://openalex.org/W1977326513","doi":"https://doi.org/10.1145/2110363.2110409","title":"Sub-cellular feature detection and automated extraction of collocalized actin and myosin regions","display_name":"Sub-cellular feature detection and automated extraction of collocalized actin and myosin regions","publication_year":2012,"publication_date":"2012-01-28","ids":{"openalex":"https://openalex.org/W1977326513","doi":"https://doi.org/10.1145/2110363.2110409","mag":"1977326513"},"language":"en","primary_location":{"id":"doi:10.1145/2110363.2110409","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2110363.2110409","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2nd ACM SIGHIT International Health Informatics Symposium","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5050280503","display_name":"Justin Martineau","orcid":null},"institutions":[{"id":"https://openalex.org/I79272384","display_name":"University of Maryland, Baltimore County","ror":"https://ror.org/02qskvh78","country_code":"US","type":"education","lineage":["https://openalex.org/I79272384"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Justin Martineau","raw_affiliation_strings":["UMBC, Baltimore, MD, USA"],"affiliations":[{"raw_affiliation_string":"UMBC, Baltimore, MD, USA","institution_ids":["https://openalex.org/I79272384"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063736870","display_name":"Ronil Mokashi","orcid":null},"institutions":[{"id":"https://openalex.org/I79272384","display_name":"University of Maryland, Baltimore County","ror":"https://ror.org/02qskvh78","country_code":"US","type":"education","lineage":["https://openalex.org/I79272384"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ronil Mokashi","raw_affiliation_strings":["UMBC, Baltimore, MD, USA"],"affiliations":[{"raw_affiliation_string":"UMBC, Baltimore, MD, USA","institution_ids":["https://openalex.org/I79272384"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011098359","display_name":"David Chapman","orcid":"https://orcid.org/0000-0003-1722-9883"},"institutions":[{"id":"https://openalex.org/I79272384","display_name":"University of Maryland, Baltimore County","ror":"https://ror.org/02qskvh78","country_code":"US","type":"education","lineage":["https://openalex.org/I79272384"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David Chapman","raw_affiliation_strings":["UMBC, Baltimore, MD, USA"],"affiliations":[{"raw_affiliation_string":"UMBC, Baltimore, MD, USA","institution_ids":["https://openalex.org/I79272384"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071151824","display_name":"Michael Grasso","orcid":"https://orcid.org/0000-0001-6455-6508"},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael Grasso","raw_affiliation_strings":["University of Maryland School of Medicine, Baltimore, MD, USA","University of Maryland School of Medicine, Baltimore,#R#MD, USA"],"affiliations":[{"raw_affiliation_string":"University of Maryland School of Medicine, Baltimore, MD, USA","institution_ids":["https://openalex.org/I126744593"]},{"raw_affiliation_string":"University of Maryland School of Medicine, Baltimore,#R#MD, USA","institution_ids":["https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003799889","display_name":"Mary Brady","orcid":null},"institutions":[{"id":"https://openalex.org/I1321296531","display_name":"National Institute of Standards and Technology","ror":"https://ror.org/05xpvk416","country_code":"US","type":"funder","lineage":["https://openalex.org/I1321296531","https://openalex.org/I1343035065"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mary Brady","raw_affiliation_strings":["National Institute of Standards and Technology, Gaithersburg, MD, USA"],"affiliations":[{"raw_affiliation_string":"National Institute of Standards and Technology, Gaithersburg, MD, USA","institution_ids":["https://openalex.org/I1321296531"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072869372","display_name":"Yelena Yesha","orcid":null},"institutions":[{"id":"https://openalex.org/I79272384","display_name":"University of Maryland, Baltimore County","ror":"https://ror.org/02qskvh78","country_code":"US","type":"education","lineage":["https://openalex.org/I79272384"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yelena Yesha","raw_affiliation_strings":["UMBC, Baltimore, MD, USA"],"affiliations":[{"raw_affiliation_string":"UMBC, Baltimore, MD, USA","institution_ids":["https://openalex.org/I79272384"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111941996","display_name":"Yaacov Yesha","orcid":null},"institutions":[{"id":"https://openalex.org/I79272384","display_name":"University of Maryland, Baltimore County","ror":"https://ror.org/02qskvh78","country_code":"US","type":"education","lineage":["https://openalex.org/I79272384"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yaacov Yesha","raw_affiliation_strings":["UMBC, Baltimore, MD, USA"],"affiliations":[{"raw_affiliation_string":"UMBC, Baltimore, MD, USA","institution_ids":["https://openalex.org/I79272384"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033513737","display_name":"Antonio Cardone","orcid":"https://orcid.org/0000-0001-6865-3524"},"institutions":[{"id":"https://openalex.org/I66946132","display_name":"University of Maryland, College Park","ror":"https://ror.org/047s2c258","country_code":"US","type":"education","lineage":["https://openalex.org/I66946132"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Antonio Cardone","raw_affiliation_strings":["University of Maryland Institute for Advanced Computer Studies, College Park, MD, USA"],"affiliations":[{"raw_affiliation_string":"University of Maryland Institute for Advanced Computer Studies, College Park, MD, USA","institution_ids":["https://openalex.org/I66946132"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5005765078","display_name":"Alden Dima","orcid":"https://orcid.org/0000-0003-0547-3117"},"institutions":[{"id":"https://openalex.org/I1321296531","display_name":"National Institute of Standards and Technology","ror":"https://ror.org/05xpvk416","country_code":"US","type":"funder","lineage":["https://openalex.org/I1321296531","https://openalex.org/I1343035065"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alden Dima","raw_affiliation_strings":["National Institute of Standards and Technology, Gaithersburg, MD, USA"],"affiliations":[{"raw_affiliation_string":"National Institute of Standards and Technology, Gaithersburg, MD, USA","institution_ids":["https://openalex.org/I1321296531"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5050280503"],"corresponding_institution_ids":["https://openalex.org/I79272384"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.03057389,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"399","last_page":"408"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10379","display_name":"Cellular Mechanics and Interactions","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10540","display_name":"Advanced Fluorescence Microscopy Techniques","score":0.9947999715805054,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/myosin","display_name":"Myosin","score":0.7319366931915283},{"id":"https://openalex.org/keywords/plug-in","display_name":"Plug-in","score":0.6450013518333435},{"id":"https://openalex.org/keywords/actin","display_name":"Actin","score":0.6120895743370056},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5834891200065613},{"id":"https://openalex.org/keywords/cytoskeleton","display_name":"Cytoskeleton","score":0.5671314001083374},{"id":"https://openalex.org/keywords/bundle","display_name":"Bundle","score":0.5347712635993958},{"id":"https://openalex.org/keywords/metric","display_name":"Metric (unit)","score":0.487473726272583},{"id":"https://openalex.org/keywords/feature-extraction","display_name":"Feature extraction","score":0.4849717617034912},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.4714905917644501},{"id":"https://openalex.org/keywords/stress-fiber","display_name":"Stress fiber","score":0.47022557258605957},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.4321240186691284},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.33798837661743164},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3093752861022949},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.250129759311676},{"id":"https://openalex.org/keywords/cell","display_name":"Cell","score":0.24078822135925293},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.15671539306640625},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.14304980635643005},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.11604040861129761}],"concepts":[{"id":"https://openalex.org/C6997183","wikidata":"https://www.wikidata.org/wiki/Q271727","display_name":"Myosin","level":2,"score":0.7319366931915283},{"id":"https://openalex.org/C4924752","wikidata":"https://www.wikidata.org/wiki/Q184148","display_name":"Plug-in","level":2,"score":0.6450013518333435},{"id":"https://openalex.org/C125705527","wikidata":"https://www.wikidata.org/wiki/Q185269","display_name":"Actin","level":2,"score":0.6120895743370056},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5834891200065613},{"id":"https://openalex.org/C142669718","wikidata":"https://www.wikidata.org/wiki/Q154626","display_name":"Cytoskeleton","level":3,"score":0.5671314001083374},{"id":"https://openalex.org/C2778134712","wikidata":"https://www.wikidata.org/wiki/Q1047307","display_name":"Bundle","level":2,"score":0.5347712635993958},{"id":"https://openalex.org/C176217482","wikidata":"https://www.wikidata.org/wiki/Q860554","display_name":"Metric (unit)","level":2,"score":0.487473726272583},{"id":"https://openalex.org/C52622490","wikidata":"https://www.wikidata.org/wiki/Q1026626","display_name":"Feature extraction","level":2,"score":0.4849717617034912},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.4714905917644501},{"id":"https://openalex.org/C2781099445","wikidata":"https://www.wikidata.org/wiki/Q4121060","display_name":"Stress fiber","level":4,"score":0.47022557258605957},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.4321240186691284},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.33798837661743164},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3093752861022949},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.250129759311676},{"id":"https://openalex.org/C1491633281","wikidata":"https://www.wikidata.org/wiki/Q7868","display_name":"Cell","level":2,"score":0.24078822135925293},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.15671539306640625},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.14304980635643005},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.11604040861129761},{"id":"https://openalex.org/C159985019","wikidata":"https://www.wikidata.org/wiki/Q181790","display_name":"Composite material","level":1,"score":0.0},{"id":"https://openalex.org/C21547014","wikidata":"https://www.wikidata.org/wiki/Q1423657","display_name":"Operations management","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/2110363.2110409","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2110363.2110409","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2nd ACM SIGHIT International Health Informatics Symposium","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320332178","display_name":"National Institute of Standards and Technology","ror":"https://ror.org/05xpvk416"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":12,"referenced_works":["https://openalex.org/W1985700335","https://openalex.org/W1994186189","https://openalex.org/W2010554130","https://openalex.org/W2011009826","https://openalex.org/W2040516748","https://openalex.org/W2044465660","https://openalex.org/W2051089021","https://openalex.org/W2083122566","https://openalex.org/W2143093135","https://openalex.org/W2145752049","https://openalex.org/W2166497548","https://openalex.org/W6660822815"],"related_works":["https://openalex.org/W47352601","https://openalex.org/W2981957539","https://openalex.org/W4287378204","https://openalex.org/W2461489085","https://openalex.org/W2219307906","https://openalex.org/W4388486163","https://openalex.org/W4395113221","https://openalex.org/W2089459557","https://openalex.org/W3174118102","https://openalex.org/W2007171281"],"abstract_inverted_index":{"We":[0],"describe":[1],"a":[2,43],"new":[3,33],"distance-based":[4],"metric":[5,20,37,63],"to":[6,22,38,153],"measure":[7],"the":[8,62,65,76,91,102,110,114,134],"strength":[9],"of":[10,59,101,109,112,162],"collocalization":[11],"in":[12,51,124],"multi-color":[13],"microscopy":[14,30],"images":[15],"for":[16,75,83,90],"user-selected":[17],"regions.":[18],"This":[19],"helps":[21],"standardize,":[23],"objectify,":[24],"quantify,":[25],"and":[26,41,64,95,119,145],"even":[27],"automate":[28],"light":[29],"observations.":[31],"Our":[32],"algorithm":[34,66],"uses":[35],"this":[36,125],"automatically":[39],"identify":[40],"annotate":[42],"donut":[44],"shaped":[45],"actomyosin":[46],"stress":[47,104],"fiber":[48,105],"bundle":[49,106],"evident":[50],"vascular":[52,141],"smooth":[53],"muscle":[54],"cells":[55,88],"on":[56],"certain":[57],"types":[58],"surfaces.":[60],"Both":[61],"have":[67],"been":[68],"implemented":[69],"as":[70],"an":[71],"open":[72],"source":[73],"plugin":[74],"popular":[77],"ImageJ":[78],"toolkit.":[79],"They":[80],"are":[81,107,127],"available":[82],"download":[84],"at":[85],"http://code.google.com/p/actin-myosin-plugin/.":[86],"Using":[87],"stained":[89],"cytoskeletal":[92],"proteins":[93],"actin":[94],"myosin,":[96],"we":[97,148],"show":[98],"how":[99],"characteristics":[100],"identified":[103],"indicative":[108],"kind":[111],"surface":[113],"cell":[115,139],"is":[116],"placed":[117],"upon,":[118],"prove":[120],"that":[121,150,157],"weak":[122],"spots":[123],"structure":[126],"correlated":[128],"with":[129],"local":[130],"membrane":[131,137],"extensions.":[132],"Given":[133],"relationship":[135],"between":[136],"extension,":[138],"migration,":[140],"disease,":[142],"embryonic":[143],"development,":[144],"cancer":[146],"metastasis":[147],"provide":[149],"these":[151],"tools":[152],"enable":[154],"biological":[155],"research":[156],"could":[158],"improve":[159],"our":[160],"quality":[161],"life.":[163]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
