{"id":"https://openalex.org/W2031344785","doi":"https://doi.org/10.1145/2037509.2037525","title":"Toward real-time simulation of cardiac dynamics","display_name":"Toward real-time simulation of cardiac dynamics","publication_year":2011,"publication_date":"2011-09-21","ids":{"openalex":"https://openalex.org/W2031344785","doi":"https://doi.org/10.1145/2037509.2037525","mag":"2031344785"},"language":"en","primary_location":{"id":"doi:10.1145/2037509.2037525","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2037509.2037525","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 9th International Conference on Computational Methods in Systems Biology","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5050836932","display_name":"Ezio Bartocci","orcid":"https://orcid.org/0000-0002-8004-6601"},"institutions":[{"id":"https://openalex.org/I59553526","display_name":"Stony Brook University","ror":"https://ror.org/05qghxh33","country_code":"US","type":"education","lineage":["https://openalex.org/I59553526"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"E. Bartocci","raw_affiliation_strings":["Stony Brook University, Stony Brook, NY"],"affiliations":[{"raw_affiliation_string":"Stony Brook University, Stony Brook, NY","institution_ids":["https://openalex.org/I59553526"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053674481","display_name":"Elizabeth M. Cherry","orcid":"https://orcid.org/0000-0001-5194-9572"},"institutions":[{"id":"https://openalex.org/I155173764","display_name":"Rochester Institute of Technology","ror":"https://ror.org/00v4yb702","country_code":"US","type":"education","lineage":["https://openalex.org/I155173764"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"E. M. Cherry","raw_affiliation_strings":["Rochester Institute of Technology, Rochester, NY","Rochester institute of Technology, Rochester, NY"],"affiliations":[{"raw_affiliation_string":"Rochester Institute of Technology, Rochester, NY","institution_ids":["https://openalex.org/I155173764"]},{"raw_affiliation_string":"Rochester institute of Technology, Rochester, NY","institution_ids":["https://openalex.org/I155173764"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038334215","display_name":"James Glimm","orcid":null},"institutions":[{"id":"https://openalex.org/I59553526","display_name":"Stony Brook University","ror":"https://ror.org/05qghxh33","country_code":"US","type":"education","lineage":["https://openalex.org/I59553526"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"J. Glimm","raw_affiliation_strings":["Stony Brook University, Stony Brook, NY"],"affiliations":[{"raw_affiliation_string":"Stony Brook University, Stony Brook, NY","institution_ids":["https://openalex.org/I59553526"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034362557","display_name":"Radu Grosu","orcid":"https://orcid.org/0000-0001-5715-2142"},"institutions":[{"id":"https://openalex.org/I59553526","display_name":"Stony Brook University","ror":"https://ror.org/05qghxh33","country_code":"US","type":"education","lineage":["https://openalex.org/I59553526"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"R. Grosu","raw_affiliation_strings":["Stony Brook University, Stony Brook, NY"],"affiliations":[{"raw_affiliation_string":"Stony Brook University, Stony Brook, NY","institution_ids":["https://openalex.org/I59553526"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039202410","display_name":"Scott A. Smolka","orcid":"https://orcid.org/0000-0002-7348-630X"},"institutions":[{"id":"https://openalex.org/I59553526","display_name":"Stony Brook University","ror":"https://ror.org/05qghxh33","country_code":"US","type":"education","lineage":["https://openalex.org/I59553526"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"S. A. Smolka","raw_affiliation_strings":["Stony Brook University, Stony Brook, NY"],"affiliations":[{"raw_affiliation_string":"Stony Brook University, Stony Brook, NY","institution_ids":["https://openalex.org/I59553526"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5067356938","display_name":"Flavio H. Fenton","orcid":"https://orcid.org/0000-0002-4089-8850"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"F. H. Fenton","raw_affiliation_strings":["Cornell University, Ithaca, NY","Cornell University (Ithaca, NY);"],"affiliations":[{"raw_affiliation_string":"Cornell University, Ithaca, NY","institution_ids":["https://openalex.org/I205783295"]},{"raw_affiliation_string":"Cornell University (Ithaca, NY);","institution_ids":["https://openalex.org/I205783295"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5050836932"],"corresponding_institution_ids":["https://openalex.org/I59553526"],"apc_list":null,"apc_paid":null,"fwci":5.2761,"has_fulltext":false,"cited_by_count":59,"citation_normalized_percentile":{"value":0.96094399,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":null,"issue":null,"first_page":"103","last_page":"112"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10217","display_name":"Cardiac electrophysiology and arrhythmias","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/2705","display_name":"Cardiology and Cardiovascular Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10217","display_name":"Cardiac electrophysiology and arrhythmias","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/2705","display_name":"Cardiology and Cardiovascular Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9717000126838684,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9642000198364258,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7036693692207336},{"id":"https://openalex.org/keywords/variable","display_name":"Variable (mathematics)","score":0.6802873015403748},{"id":"https://openalex.org/keywords/breakup","display_name":"Breakup","score":0.48740532994270325},{"id":"https://openalex.org/keywords/grid","display_name":"Grid","score":0.4670020341873169},{"id":"https://openalex.org/keywords/real-time-simulation","display_name":"Real-time simulation","score":0.4661250114440918},{"id":"https://openalex.org/keywords/range","display_name":"Range (aeronautics)","score":0.4403280019760132},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.43489861488342285},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3735954761505127},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.32137471437454224},{"id":"https://openalex.org/keywords/simulation","display_name":"Simulation","score":0.31826913356781006},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.14199861884117126},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.12558063864707947},{"id":"https://openalex.org/keywords/mechanics","display_name":"Mechanics","score":0.11119893193244934}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7036693692207336},{"id":"https://openalex.org/C182365436","wikidata":"https://www.wikidata.org/wiki/Q50701","display_name":"Variable (mathematics)","level":2,"score":0.6802873015403748},{"id":"https://openalex.org/C2777871205","wikidata":"https://www.wikidata.org/wiki/Q100926628","display_name":"Breakup","level":2,"score":0.48740532994270325},{"id":"https://openalex.org/C187691185","wikidata":"https://www.wikidata.org/wiki/Q2020720","display_name":"Grid","level":2,"score":0.4670020341873169},{"id":"https://openalex.org/C2781469108","wikidata":"https://www.wikidata.org/wiki/Q7300799","display_name":"Real-time simulation","level":2,"score":0.4661250114440918},{"id":"https://openalex.org/C204323151","wikidata":"https://www.wikidata.org/wiki/Q905424","display_name":"Range (aeronautics)","level":2,"score":0.4403280019760132},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.43489861488342285},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3735954761505127},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.32137471437454224},{"id":"https://openalex.org/C44154836","wikidata":"https://www.wikidata.org/wiki/Q45045","display_name":"Simulation","level":1,"score":0.31826913356781006},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.14199861884117126},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.12558063864707947},{"id":"https://openalex.org/C57879066","wikidata":"https://www.wikidata.org/wiki/Q41217","display_name":"Mechanics","level":1,"score":0.11119893193244934},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C159985019","wikidata":"https://www.wikidata.org/wiki/Q181790","display_name":"Composite material","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1145/2037509.2037525","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2037509.2037525","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 9th International Conference on Computational Methods in Systems Biology","raw_type":"proceedings-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.221.2736","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.221.2736","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cs.sunysb.edu/%7Egrosu/cmsb11Cuda.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.651.4848","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.651.4848","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://thevirtualheart.org/FentonCherry/pdf/gpu.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2805925527","display_name":null,"funder_award_id":"CCF-0926190CCF-1018459CDI-1028261","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G3175640290","display_name":null,"funder_award_id":"FA0550-09-1-0481","funder_id":"https://openalex.org/F4320338279","funder_display_name":"Air Force Office of Scientific Research"},{"id":"https://openalex.org/G4512440373","display_name":null,"funder_award_id":"R01HL089271-01A2","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7246533301","display_name":null,"funder_award_id":"CCF-0926190CCF-1018459CDI-1028261","funder_id":"https://openalex.org/F4320337387","funder_display_name":"Division of Computing and Communication Foundations"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337387","display_name":"Division of Computing and Communication Foundations","ror":"https://ror.org/01mng8331"},{"id":"https://openalex.org/F4320338279","display_name":"Air Force Office of Scientific Research","ror":"https://ror.org/011e9bt93"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":52,"referenced_works":["https://openalex.org/W164384110","https://openalex.org/W183598917","https://openalex.org/W190812387","https://openalex.org/W1489387013","https://openalex.org/W1632776070","https://openalex.org/W1816625370","https://openalex.org/W1835542263","https://openalex.org/W1919989578","https://openalex.org/W1974668957","https://openalex.org/W1975676241","https://openalex.org/W1976104097","https://openalex.org/W1977098804","https://openalex.org/W1981647713","https://openalex.org/W1982599067","https://openalex.org/W1984336411","https://openalex.org/W1985940938","https://openalex.org/W1986023817","https://openalex.org/W1986967638","https://openalex.org/W2006351938","https://openalex.org/W2009375605","https://openalex.org/W2017095658","https://openalex.org/W2028146834","https://openalex.org/W2032466503","https://openalex.org/W2037004718","https://openalex.org/W2041387489","https://openalex.org/W2045745761","https://openalex.org/W2058541071","https://openalex.org/W2061451182","https://openalex.org/W2069014028","https://openalex.org/W2069857350","https://openalex.org/W2074684311","https://openalex.org/W2078242986","https://openalex.org/W2085949935","https://openalex.org/W2086889049","https://openalex.org/W2098044063","https://openalex.org/W2098355081","https://openalex.org/W2110938307","https://openalex.org/W2111609443","https://openalex.org/W2115765852","https://openalex.org/W2130139165","https://openalex.org/W2131791121","https://openalex.org/W2132333692","https://openalex.org/W2138669011","https://openalex.org/W2142854573","https://openalex.org/W2144148024","https://openalex.org/W2153382835","https://openalex.org/W2163071496","https://openalex.org/W2163726170","https://openalex.org/W2171735519","https://openalex.org/W4248028800","https://openalex.org/W4251811303","https://openalex.org/W4300608656"],"related_works":["https://openalex.org/W2352892738","https://openalex.org/W2084164645","https://openalex.org/W4309223525","https://openalex.org/W1501473830","https://openalex.org/W1691051400","https://openalex.org/W104982047","https://openalex.org/W2387742153","https://openalex.org/W2554026873","https://openalex.org/W2074513997","https://openalex.org/W2055522053"],"abstract_inverted_index":{"We":[0,131],"show":[1,133],"that":[2,28,64,134],"through":[3],"careful":[4],"and":[5,24,89,104,107,162,188],"model-specific":[6],"optimizations":[7],"of":[8,13,41,45,61,69,96,123,138,150,155,168,184],"their":[9,102],"GPU":[10,136],"implementations,":[11],"simulations":[12,40,149],"realistic,":[14],"detailed":[15,42],"cardiac-cell":[16],"models":[17,44,60,140],"now":[18],"can":[19,141],"be":[20],"performed":[21],"in":[22,26,114,120,177],"2D":[23],"3D":[25],"times":[27,116],"are":[29],"close":[30],"to":[31,127,145],"real":[32],"time":[33],"using":[34,51],"a":[35,66],"desktop":[36],"computer.":[37],"Previously,":[38],"large-scale":[39],"mathematical":[43],"cardiac":[46,62,129,156],"cells":[47],"were":[48],"possible":[49],"only":[50],"supercomputers.":[52],"In":[53],"our":[54,135],"study,":[55],"we":[56,99],"consider":[57],"five":[58],"different":[59],"electrophysiology":[63],"span":[65],"broad":[67],"range":[68],"computational":[70],"complexity:":[71],"the":[72,76,80,84,90,121,124,172,178,182],"two-variable":[73],"Karma":[74],"model,":[75,79,83,88],"four-variable":[77],"Bueno-Orovio-Cherry-Fenton":[78],"eight-variable":[81],"Beeler-Reuter":[82],"19-variable":[85],"Ten":[86],"Tusscher-Panfilov":[87],"67-variable":[91],"Iyer-Mazhari-Winslow":[92],"model.":[93],"For":[94],"each":[95],"these":[97,139],"models,":[98],"treat":[100],"both":[101],"single-":[103],"double-precision":[105],"versions":[106],"demonstrate":[108],"linear":[109],"or":[110],"even":[111],"sub-linear":[112],"growth":[113],"simulation":[115,143],"with":[117],"an":[118],"increase":[119,142],"size":[122],"grid":[125],"used":[126],"model":[128],"tissue.":[130],"also":[132],"implementations":[137],"speeds":[144],"near":[146,179],"real-time":[147,169],"for":[148,174],"complex":[151],"spatial":[152],"patterns":[153],"indicative":[154],"arrhythmic":[157],"disorders,":[158],"including":[159,191],"spiral":[160,163],"waves":[161],"wave":[164],"breakup.":[165],"The":[166],"achievement":[167],"applications":[170],"without":[171],"need":[173],"supercomputers":[175],"may,":[176],"term,":[180],"facilitate":[181],"adoption":[183],"modeling-based":[185],"clinical":[186],"diagnostics":[187],"treatment":[189],"planning,":[190],"patient-specific":[192],"electrophysiological":[193],"studies.":[194]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":8},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":10},{"year":2013,"cited_by_count":10},{"year":2012,"cited_by_count":4}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
