{"id":"https://openalex.org/W2051192174","doi":"https://doi.org/10.1145/2037509.2037513","title":"The phosphorylation of the heat shock factor as a modulator for the heat shock response","display_name":"The phosphorylation of the heat shock factor as a modulator for the heat shock response","publication_year":2011,"publication_date":"2011-09-21","ids":{"openalex":"https://openalex.org/W2051192174","doi":"https://doi.org/10.1145/2037509.2037513","mag":"2051192174"},"language":"en","primary_location":{"id":"doi:10.1145/2037509.2037513","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2037509.2037513","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 9th International Conference on Computational Methods in Systems Biology","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5081215602","display_name":"Eugen Czeizler","orcid":"https://orcid.org/0000-0002-1607-1554"},"institutions":[{"id":"https://openalex.org/I9927081","display_name":"Aalto University","ror":"https://ror.org/020hwjq30","country_code":"FI","type":"education","lineage":["https://openalex.org/I9927081"]}],"countries":["FI"],"is_corresponding":true,"raw_author_name":"Eugen Czeizler","raw_affiliation_strings":["Aalto University, Espoo, Finland","[Aalto University, Espoo,, Finland]"],"affiliations":[{"raw_affiliation_string":"Aalto University, Espoo, Finland","institution_ids":["https://openalex.org/I9927081"]},{"raw_affiliation_string":"[Aalto University, Espoo,, Finland]","institution_ids":["https://openalex.org/I9927081"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079232711","display_name":"Vladimir Rogojin","orcid":null},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Vladimir Rogojin","raw_affiliation_strings":["Helsinki University, Helsinki, Finland"],"affiliations":[{"raw_affiliation_string":"Helsinki University, Helsinki, Finland","institution_ids":["https://openalex.org/I133731052"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5047091186","display_name":"Ion Petre","orcid":"https://orcid.org/0000-0002-5014-5529"},"institutions":[{"id":"https://openalex.org/I130217899","display_name":"\u00c5bo Akademi University","ror":"https://ror.org/029pk6x14","country_code":"FI","type":"education","lineage":["https://openalex.org/I130217899"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Ion Petre","raw_affiliation_strings":["\u00c5bo Akademi University, Turku, Finland"],"affiliations":[{"raw_affiliation_string":"\u00c5bo Akademi University, Turku, Finland","institution_ids":["https://openalex.org/I130217899"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5081215602"],"corresponding_institution_ids":["https://openalex.org/I9927081"],"apc_list":null,"apc_paid":null,"fwci":0.27952385,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.56846915,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"9","last_page":"23"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10934","display_name":"Heat shock proteins research","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10934","display_name":"Heat shock proteins research","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13539","display_name":"thermodynamics and calorimetric analyses","score":0.9832000136375427,"subfield":{"id":"https://openalex.org/subfields/1606","display_name":"Physical and Theoretical Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/heat-shock-factor","display_name":"Heat shock factor","score":0.8695712089538574},{"id":"https://openalex.org/keywords/heat-shock-protein","display_name":"Heat shock protein","score":0.7481560707092285},{"id":"https://openalex.org/keywords/phosphorylation","display_name":"Phosphorylation","score":0.7056224346160889},{"id":"https://openalex.org/keywords/transactivation","display_name":"Transactivation","score":0.6417502164840698},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.6121468544006348},{"id":"https://openalex.org/keywords/heat-shock","display_name":"Heat shock","score":0.6054532527923584},{"id":"https://openalex.org/keywords/transcription-factor","display_name":"Transcription factor","score":0.5995428562164307},{"id":"https://openalex.org/keywords/shock","display_name":"Shock (circulatory)","score":0.4153730571269989},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4103369414806366},{"id":"https://openalex.org/keywords/hsp70","display_name":"Hsp70","score":0.37311822175979614},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.3284369111061096},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.29378047585487366},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.19975429773330688}],"concepts":[{"id":"https://openalex.org/C52981337","wikidata":"https://www.wikidata.org/wiki/Q24782817","display_name":"Heat shock factor","level":5,"score":0.8695712089538574},{"id":"https://openalex.org/C205260736","wikidata":"https://www.wikidata.org/wiki/Q418939","display_name":"Heat shock protein","level":3,"score":0.7481560707092285},{"id":"https://openalex.org/C11960822","wikidata":"https://www.wikidata.org/wiki/Q242736","display_name":"Phosphorylation","level":2,"score":0.7056224346160889},{"id":"https://openalex.org/C1292079","wikidata":"https://www.wikidata.org/wiki/Q3817769","display_name":"Transactivation","level":4,"score":0.6417502164840698},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.6121468544006348},{"id":"https://openalex.org/C137984847","wikidata":"https://www.wikidata.org/wiki/Q1621258","display_name":"Heat shock","level":4,"score":0.6054532527923584},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.5995428562164307},{"id":"https://openalex.org/C2781300812","wikidata":"https://www.wikidata.org/wiki/Q178061","display_name":"Shock (circulatory)","level":2,"score":0.4153730571269989},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4103369414806366},{"id":"https://openalex.org/C68991219","wikidata":"https://www.wikidata.org/wiki/Q419102","display_name":"Hsp70","level":4,"score":0.37311822175979614},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.3284369111061096},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.29378047585487366},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.19975429773330688},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1145/2037509.2037513","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2037509.2037513","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 9th International Conference on Computational Methods in Systems Biology","raw_type":"proceedings-article"},{"id":"pmh:oai:pure.atira.dk:publications/1bb25dd2-7b48-4d38-aa01-7e710cbefc98","is_oa":false,"landing_page_url":"https://research.abo.fi/en/publications/1bb25dd2-7b48-4d38-aa01-7e710cbefc98","pdf_url":null,"source":{"id":"https://openalex.org/S4306400216","display_name":"Research Portal (King's College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I183935753","host_organization_name":"King's College London","host_organization_lineage":["https://openalex.org/I183935753"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Czeizler, E, Rogojin, V & Petre, I 2011, The Phosphorylation of the Heat Shock Factor as a Modulator for the Heat Shock Response. in F Fages (ed.), CMSB'11 9th International Conference on Computational Methods in Systems Biology. ACM, pp. 9\u201323, International Conference on Computational Methods in Systems Biology (CMSB), 21/09/11. https://doi.org/10.1145/2037509.2037513","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":30,"referenced_works":["https://openalex.org/W1892307949","https://openalex.org/W1913037206","https://openalex.org/W1970221707","https://openalex.org/W2000362253","https://openalex.org/W2000945933","https://openalex.org/W2001610972","https://openalex.org/W2014914786","https://openalex.org/W2015640955","https://openalex.org/W2019079217","https://openalex.org/W2024414544","https://openalex.org/W2042502745","https://openalex.org/W2046847750","https://openalex.org/W2052583486","https://openalex.org/W2063464435","https://openalex.org/W2064842635","https://openalex.org/W2074236978","https://openalex.org/W2079250951","https://openalex.org/W2096427376","https://openalex.org/W2096595244","https://openalex.org/W2097152226","https://openalex.org/W2100090579","https://openalex.org/W2102653059","https://openalex.org/W2116991275","https://openalex.org/W2125007784","https://openalex.org/W2137152341","https://openalex.org/W2144652377","https://openalex.org/W2153119463","https://openalex.org/W2154733002","https://openalex.org/W2169207156","https://openalex.org/W4238726034"],"related_works":["https://openalex.org/W108401637","https://openalex.org/W4241779228","https://openalex.org/W1925686649","https://openalex.org/W2292895565","https://openalex.org/W1969768379","https://openalex.org/W4324354993","https://openalex.org/W2041979259","https://openalex.org/W2145992465","https://openalex.org/W3086109635","https://openalex.org/W2084695787"],"abstract_inverted_index":{"The":[0,21,43],"heat":[1,25,32,56,105],"shock":[2,26,33,57,106],"response":[3],"is":[4,47,66],"a":[5,74,166,173],"well":[6,99],"conserved":[7],"defence":[8],"mechanism":[9],"against":[10],"the":[11,29,51,63,67,77,82,85,104,110,119,157],"accumulation":[12],"of":[13,31,45,62,69,79,84,103,113,115,124,156,169,172],"misfolded":[14],"proteins":[15,34],"due":[16],"to":[17,24,135,140,143],"prolonged":[18],"elevated":[19],"heat.":[20],"cell":[22],"responds":[23],"by":[27,54],"raising":[28],"levels":[30],"(hsp),":[35],"which":[36,132],"are":[37],"responsible":[38],"for":[39],"chaperoning":[40],"protein":[41],"refolding.":[42],"synthesis":[44],"hsp":[46],"highly":[48],"regulated":[49],"at":[50],"transcription":[52],"level":[53],"specific":[55],"(transcription)":[58],"factors":[59],"(hsf).":[60],"One":[61],"regulation":[64],"mechanisms":[65],"phosphorylation":[68],"hsf's.":[70],"Experimental":[71],"evidence":[72,152],"shows":[73],"connection":[75],"between":[76],"hyper-phosphorylation":[78],"hsf's":[80],"and":[81],"transactivation":[83],"hsp-encoding":[86],"genes.":[87],"In":[88,147],"this":[89],"paper":[90],"we":[91,127,133,149,161],"incorporate":[92],"several":[93],"(de)phosphorylation":[94],"pathways":[95,117,126],"into":[96],"an":[97],"existing":[98,144],"validated":[100],"computational":[101,130,170],"model":[102],"response.":[107],"We":[108],"analyze":[109],"quantitative":[111],"control":[112],"each":[114,123],"these":[116,125],"over":[118],"entire":[120],"process.":[121],"For":[122],"create":[128],"detailed":[129],"models":[131],"subject":[134],"parameter":[136],"estimation":[137],"in":[138],"order":[139],"fit":[141],"them":[142],"experimental":[145],"data.":[146],"particular,":[148],"find":[150],"conclusive":[151],"supporting":[153],"only":[154],"one":[155],"analyzed":[158],"pathways.":[159],"Also,":[160],"corroborate":[162],"our":[163],"results":[164],"with":[165],"sequent":[167],"set":[168],"models,":[171],"more":[174],"reduced":[175],"size.":[176]},"counts_by_year":[{"year":2014,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
