{"id":"https://openalex.org/W1977827901","doi":"https://doi.org/10.1145/2037509.2037511","title":"Kinetic modelling of large-scale metabolic networks","display_name":"Kinetic modelling of large-scale metabolic networks","publication_year":2011,"publication_date":"2011-09-21","ids":{"openalex":"https://openalex.org/W1977827901","doi":"https://doi.org/10.1145/2037509.2037511","mag":"1977827901"},"language":"en","primary_location":{"id":"doi:10.1145/2037509.2037511","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2037509.2037511","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 9th International Conference on Computational Methods in Systems Biology","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5058635802","display_name":"Pedro Mendes","orcid":"https://orcid.org/0000-0001-6507-9168"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Pedro Mendes","raw_affiliation_strings":["The University of Manchester, Manchester, U. K","[The University of Manchester, Manchester, U.K.]"],"affiliations":[{"raw_affiliation_string":"The University of Manchester, Manchester, U. K","institution_ids":[]},{"raw_affiliation_string":"[The University of Manchester, Manchester, U.K.]","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072794019","display_name":"Natalie Stanford","orcid":"https://orcid.org/0000-0003-4958-0184"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Natalie J. Stanford","raw_affiliation_strings":["The University of Manchester, Manchester, U. K","[The University of Manchester, Manchester, U.K.]"],"affiliations":[{"raw_affiliation_string":"The University of Manchester, Manchester, U. K","institution_ids":[]},{"raw_affiliation_string":"[The University of Manchester, Manchester, U.K.]","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5084775701","display_name":"Kieran Smallbone","orcid":"https://orcid.org/0000-0003-2815-7045"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Kieran Smallbone","raw_affiliation_strings":["The University of Manchester, Manchester, U. K","[The University of Manchester, Manchester, U.K.]"],"affiliations":[{"raw_affiliation_string":"The University of Manchester, Manchester, U. K","institution_ids":[]},{"raw_affiliation_string":"[The University of Manchester, Manchester, U.K.]","institution_ids":["https://openalex.org/I28407311"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5058635802"],"corresponding_institution_ids":["https://openalex.org/I28407311"],"apc_list":null,"apc_paid":null,"fwci":0.1334,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.51632119,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"5","last_page":"6"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.995199978351593,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9947999715805054,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metabolic-network","display_name":"Metabolic network","score":0.6760631203651428},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5979477167129517},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5413352251052856},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5295180678367615},{"id":"https://openalex.org/keywords/sophistication","display_name":"Sophistication","score":0.5092974901199341},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.48997965455055237},{"id":"https://openalex.org/keywords/saccharomyces-cerevisiae","display_name":"Saccharomyces cerevisiae","score":0.48769959807395935},{"id":"https://openalex.org/keywords/organism","display_name":"Organism","score":0.47415226697921753},{"id":"https://openalex.org/keywords/metabolic-engineering","display_name":"Metabolic engineering","score":0.46745213866233826},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.43545299768447876},{"id":"https://openalex.org/keywords/model-organism","display_name":"Model organism","score":0.4241354763507843},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.4168662130832672},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.41283828020095825},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.36760830879211426},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.28823578357696533},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2245645523071289},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.18966993689537048}],"concepts":[{"id":"https://openalex.org/C101810790","wikidata":"https://www.wikidata.org/wiki/Q2263094","display_name":"Metabolic network","level":2,"score":0.6760631203651428},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5979477167129517},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5413352251052856},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5295180678367615},{"id":"https://openalex.org/C168725872","wikidata":"https://www.wikidata.org/wiki/Q991663","display_name":"Sophistication","level":2,"score":0.5092974901199341},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.48997965455055237},{"id":"https://openalex.org/C2777576037","wikidata":"https://www.wikidata.org/wiki/Q719725","display_name":"Saccharomyces cerevisiae","level":3,"score":0.48769959807395935},{"id":"https://openalex.org/C137858568","wikidata":"https://www.wikidata.org/wiki/Q7239","display_name":"Organism","level":2,"score":0.47415226697921753},{"id":"https://openalex.org/C6350086","wikidata":"https://www.wikidata.org/wiki/Q6822347","display_name":"Metabolic engineering","level":3,"score":0.46745213866233826},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.43545299768447876},{"id":"https://openalex.org/C19843653","wikidata":"https://www.wikidata.org/wiki/Q213907","display_name":"Model organism","level":3,"score":0.4241354763507843},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.4168662130832672},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.41283828020095825},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.36760830879211426},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.28823578357696533},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2245645523071289},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.18966993689537048},{"id":"https://openalex.org/C36289849","wikidata":"https://www.wikidata.org/wiki/Q34749","display_name":"Social science","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1145/2037509.2037511","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2037509.2037511","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 9th International Conference on Computational Methods in Systems Biology","raw_type":"proceedings-article"},{"id":"pmh:oai:eprints.maths.manchester.ac.uk.MIMS.EPrints:1700","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306400452","display_name":"MIMS EPrints (University of Southampton)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I43439940","host_organization_name":"University of Southampton","host_organization_lineage":["https://openalex.org/I43439940"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Book Section"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/16","display_name":"Peace, Justice and strong institutions","score":0.75}],"awards":[{"id":"https://openalex.org/G427071118","display_name":null,"funder_award_id":"BB/C008219/1","funder_id":"https://openalex.org/F4320320291","funder_display_name":"University of Manchester"}],"funders":[{"id":"https://openalex.org/F4320320291","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27"},{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":5,"referenced_works":["https://openalex.org/W2047632644","https://openalex.org/W2092838569","https://openalex.org/W2102944388","https://openalex.org/W2136043941","https://openalex.org/W2157166164"],"related_works":["https://openalex.org/W2402358048","https://openalex.org/W3022000530","https://openalex.org/W2991154838","https://openalex.org/W2338895903","https://openalex.org/W2126646394","https://openalex.org/W2556443379","https://openalex.org/W2966631026","https://openalex.org/W2148121172","https://openalex.org/W1992844569","https://openalex.org/W2072067873"],"abstract_inverted_index":{"A":[0],"major":[1],"result":[2],"of":[3,12,28,50,86,101],"the":[4,63,84,87,93],"various":[5,26],"genome":[6,64],"programs":[7],"has":[8],"been":[9,45],"an":[10],"accumulation":[11],"complete":[13,38],"genomic":[14],"sequences":[15,39],"and":[16,33,75,103],"their":[17],"associated":[18],"annotation.":[19],"These":[20,66],"resources":[21],"are":[22,54,60,69],"extremely":[23],"valuable":[24],"to":[25,47],"fields":[27],"biology,":[29],"not":[30],"least":[31],"metabolism":[32],"metabolic":[34,51,67,73,94],"modelling.":[35],"As":[36],"these":[37],"have":[40,44],"started":[41],"appearing":[42],"they":[43],"used":[46],"derive":[48],"lists":[49],"reactions":[52],"that":[53],"catalysed":[55],"by":[56],"enzymes":[57],"whose":[58],"genes":[59],"identified":[61],"in":[62,99],"sequence.":[65],"\"reconstructions\"":[68],"further":[70],"interpreted":[71],"as":[72],"networks":[74],"several":[76],"analyses":[77],"can":[78],"be":[79],"derived":[80],"from":[81],"them.":[82],"In":[83],"case":[85],"popular":[88],"model":[89],"organism":[90],"Saccharomyces":[91],"cerevisiae":[92],"reconstruction":[95],"is":[96],"fairly":[97],"advanced":[98],"terms":[100],"completeness":[102],"sophistication":[104],"[2,":[105],"1].":[106]},"counts_by_year":[{"year":2015,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
