{"id":"https://openalex.org/W2118692603","doi":"https://doi.org/10.1145/2024724.2024750","title":"Joint DAC/IWBDA special session design and synthesis of biological circuits","display_name":"Joint DAC/IWBDA special session design and synthesis of biological circuits","publication_year":2011,"publication_date":"2011-06-05","ids":{"openalex":"https://openalex.org/W2118692603","doi":"https://doi.org/10.1145/2024724.2024750","mag":"2118692603"},"language":"en","primary_location":{"id":"doi:10.1145/2024724.2024750","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2024724.2024750","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 48th Design Automation Conference","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5006554658","display_name":"Douglas Densmore","orcid":"https://orcid.org/0000-0002-7666-6808"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Douglas Densmore","raw_affiliation_strings":["Boston University, Boston, MA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Boston University, Boston, MA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090469068","display_name":"Mark Horowitz","orcid":"https://orcid.org/0000-0003-3245-7542"},"institutions":[{"id":"https://openalex.org/I4210137306","display_name":"Stanford Medicine","ror":"https://ror.org/03mtd9a03","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210137306","https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mark Horowitz","raw_affiliation_strings":["Stanford, Stanford, CA","Stanford , Stanford, CA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Stanford, Stanford, CA","institution_ids":["https://openalex.org/I4210137306"]},{"raw_affiliation_string":"Stanford , Stanford, CA","institution_ids":["https://openalex.org/I4210137306"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045475274","display_name":"Smita Krishnaswamy","orcid":"https://orcid.org/0000-0001-5823-1985"},"institutions":[{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Smita Krishnaswamy","raw_affiliation_strings":["Columbia, New York, NY","Columbia, New York, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Columbia, New York, NY","institution_ids":["https://openalex.org/I78577930"]},{"raw_affiliation_string":"Columbia, New York, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023687769","display_name":"Xiling Shen","orcid":"https://orcid.org/0000-0002-4978-3531"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xiling Shen","raw_affiliation_strings":["Cornell, Ithaca, NY","Cornell, Ithaca, NY, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cornell, Ithaca, NY","institution_ids":["https://openalex.org/I205783295"]},{"raw_affiliation_string":"Cornell, Ithaca, NY, USA","institution_ids":["https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066623854","display_name":"Adam P. Arkin","orcid":"https://orcid.org/0000-0002-4999-2931"},"institutions":[{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Adam Arkin","raw_affiliation_strings":["University of California, Berkeley, Berkeley, CA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of California, Berkeley, Berkeley, CA","institution_ids":["https://openalex.org/I95457486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000956443","display_name":"Erik Winfree","orcid":"https://orcid.org/0000-0002-5899-7523"},"institutions":[{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Erik Winfree","raw_affiliation_strings":["California Institute of Technology, Pasadena, CA","California Institute of Technology. Pasadena USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"California Institute of Technology, Pasadena, CA","institution_ids":["https://openalex.org/I122411786"]},{"raw_affiliation_string":"California Institute of Technology. Pasadena USA","institution_ids":["https://openalex.org/I122411786"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5024624314","display_name":"C. Voigt","orcid":null},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chris Voigt","raw_affiliation_strings":["University of California, San, Francisco, San Francisco, CA","University of California, San Francisco, San Francisco, CA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of California, San, Francisco, San Francisco, CA","institution_ids":["https://openalex.org/I180670191"]},{"raw_affiliation_string":"University of California, San Francisco, San Francisco, CA#TAB#","institution_ids":["https://openalex.org/I180670191"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.08716256,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"114","last_page":"115"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9700000286102295,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9700000286102295,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9591000080108643,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11663","display_name":"Viral Infectious Diseases and Gene Expression in Insects","score":0.9280999898910522,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7349628210067749},{"id":"https://openalex.org/keywords/synthetic-biology","display_name":"Synthetic biology","score":0.6625316739082336},{"id":"https://openalex.org/keywords/session","display_name":"Session (web analytics)","score":0.6394462585449219},{"id":"https://openalex.org/keywords/electronic-design-automation","display_name":"Electronic design automation","score":0.577960193157196},{"id":"https://openalex.org/keywords/electronic-circuit","display_name":"Electronic circuit","score":0.570513129234314},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.47561055421829224},{"id":"https://openalex.org/keywords/automation","display_name":"Automation","score":0.4682539403438568},{"id":"https://openalex.org/keywords/computer-architecture","display_name":"Computer architecture","score":0.4567791521549225},{"id":"https://openalex.org/keywords/circuit-design","display_name":"Circuit design","score":0.4169617295265198},{"id":"https://openalex.org/keywords/computer-engineering","display_name":"Computer engineering","score":0.4067215919494629},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.3834255039691925},{"id":"https://openalex.org/keywords/embedded-system","display_name":"Embedded system","score":0.19862553477287292},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.17297965288162231},{"id":"https://openalex.org/keywords/electrical-engineering","display_name":"Electrical engineering","score":0.11913636326789856},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.08160552382469177},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.07559847831726074},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.06902042031288147}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7349628210067749},{"id":"https://openalex.org/C191908910","wikidata":"https://www.wikidata.org/wiki/Q862838","display_name":"Synthetic biology","level":2,"score":0.6625316739082336},{"id":"https://openalex.org/C2779182362","wikidata":"https://www.wikidata.org/wiki/Q17126187","display_name":"Session (web analytics)","level":2,"score":0.6394462585449219},{"id":"https://openalex.org/C64260653","wikidata":"https://www.wikidata.org/wiki/Q1194864","display_name":"Electronic design automation","level":2,"score":0.577960193157196},{"id":"https://openalex.org/C134146338","wikidata":"https://www.wikidata.org/wiki/Q1815901","display_name":"Electronic circuit","level":2,"score":0.570513129234314},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.47561055421829224},{"id":"https://openalex.org/C115901376","wikidata":"https://www.wikidata.org/wiki/Q184199","display_name":"Automation","level":2,"score":0.4682539403438568},{"id":"https://openalex.org/C118524514","wikidata":"https://www.wikidata.org/wiki/Q173212","display_name":"Computer architecture","level":1,"score":0.4567791521549225},{"id":"https://openalex.org/C190560348","wikidata":"https://www.wikidata.org/wiki/Q3245116","display_name":"Circuit design","level":2,"score":0.4169617295265198},{"id":"https://openalex.org/C113775141","wikidata":"https://www.wikidata.org/wiki/Q428691","display_name":"Computer engineering","level":1,"score":0.4067215919494629},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.3834255039691925},{"id":"https://openalex.org/C149635348","wikidata":"https://www.wikidata.org/wiki/Q193040","display_name":"Embedded system","level":1,"score":0.19862553477287292},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.17297965288162231},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.11913636326789856},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.08160552382469177},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.07559847831726074},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.06902042031288147},{"id":"https://openalex.org/C78519656","wikidata":"https://www.wikidata.org/wiki/Q101333","display_name":"Mechanical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1145/2024724.2024750","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2024724.2024750","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 48th Design Automation Conference","raw_type":"proceedings-article"},{"id":"pmh:oai:authors.library.caltech.edu:31573","is_oa":false,"landing_page_url":"https://authors.library.caltech.edu/31573/","pdf_url":null,"source":{"id":"https://openalex.org/S4306402161","display_name":"CaltechAUTHORS (California Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I122411786","host_organization_name":"California Institute of Technology","host_organization_lineage":["https://openalex.org/I122411786"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Book Section"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.6200000047683716,"id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W3214257365","https://openalex.org/W2391863233","https://openalex.org/W1970528334","https://openalex.org/W1992128702","https://openalex.org/W1563430967","https://openalex.org/W2039041127","https://openalex.org/W2066877376","https://openalex.org/W4391129830","https://openalex.org/W2373386111","https://openalex.org/W339514002"],"abstract_inverted_index":{"With":[0],"the":[1,22,45,90,99],"growing":[2],"complexity":[3],"of":[4,102],"synthetic":[5,28,51,72,88,105],"biological":[6,52],"circuits,":[7,53,89],"robust":[8],"and":[9,16,24,36,85,95],"systematic":[10],"methods":[11],"are":[12,30],"needed":[13],"for":[14,104],"design":[15,25,35,84],"test.":[17],"Leveraging":[18],"lessons":[19],"learned":[20],"from":[21],"semiconductor":[23],"automation":[26],"industries,":[27],"biologists":[29,73],"starting":[31],"to":[32,44,58,82],"adopt":[33],"computer-aided":[34],"verification":[37],"software":[38,80],"with":[39,49],"some":[40],"success.":[41],"However,":[42],"due":[43],"great":[46],"challenges":[47,92],"associated":[48],"designing":[50],"this":[54,68],"nascent":[55],"approach":[56],"has":[57],"address":[59],"many":[60],"problems":[61],"not":[62],"present":[63],"in":[64],"electronic":[65],"circuits.":[66],"In":[67],"session,":[69],"three":[70],"leading":[71],"will":[74],"share":[75],"how":[76],"they":[77,93],"have":[78],"developed":[79],"tools":[81,103],"help":[83],"verify":[86],"their":[87,96],"unique":[91],"face,":[94],"insights":[97],"into":[98],"next":[100],"generation":[101],"biology.":[106]},"counts_by_year":[],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
