{"id":"https://openalex.org/W2064704940","doi":"https://doi.org/10.1145/2016741.2016782","title":"Building gateways for life-science applications using the dynamic application runtime environment (DARE) framework","display_name":"Building gateways for life-science applications using the dynamic application runtime environment (DARE) framework","publication_year":2011,"publication_date":"2011-07-18","ids":{"openalex":"https://openalex.org/W2064704940","doi":"https://doi.org/10.1145/2016741.2016782","mag":"2064704940"},"language":"en","primary_location":{"id":"doi:10.1145/2016741.2016782","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2016741.2016782","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2011 TeraGrid Conference: Extreme Digital Discovery","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100615686","display_name":"Joohyun Kim","orcid":"https://orcid.org/0000-0001-7132-5724"},"institutions":[{"id":"https://openalex.org/I121820613","display_name":"Louisiana State University","ror":"https://ror.org/05ect4e57","country_code":"US","type":"education","lineage":["https://openalex.org/I121820613"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joohyun Kim","raw_affiliation_strings":["Louisiana State University, Baton Rouge, LA","Louisiana State University , Baton Rouge, LA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Louisiana State University, Baton Rouge, LA","institution_ids":["https://openalex.org/I121820613"]},{"raw_affiliation_string":"Louisiana State University , Baton Rouge, LA","institution_ids":["https://openalex.org/I121820613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014521485","display_name":"Sharath Maddineni","orcid":null},"institutions":[{"id":"https://openalex.org/I121820613","display_name":"Louisiana State University","ror":"https://ror.org/05ect4e57","country_code":"US","type":"education","lineage":["https://openalex.org/I121820613"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sharath Maddineni","raw_affiliation_strings":["Louisiana State University, Baton Rouge, LA","Louisiana State University , Baton Rouge, LA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Louisiana State University, Baton Rouge, LA","institution_ids":["https://openalex.org/I121820613"]},{"raw_affiliation_string":"Louisiana State University , Baton Rouge, LA","institution_ids":["https://openalex.org/I121820613"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5038763846","display_name":"Shantenu Jha","orcid":"https://orcid.org/0000-0002-5040-026X"},"institutions":[{"id":"https://openalex.org/I102322142","display_name":"Rutgers, The State University of New Jersey","ror":"https://ror.org/05vt9qd57","country_code":"US","type":"education","lineage":["https://openalex.org/I102322142"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shantenu Jha","raw_affiliation_strings":["Rutgers University, Piscataway, NJ and University Baton Rouge, LA","Rutgers University, Piscataway, NJ and University Baton Rouge, LA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Rutgers University, Piscataway, NJ and University Baton Rouge, LA","institution_ids":["https://openalex.org/I102322142"]},{"raw_affiliation_string":"Rutgers University, Piscataway, NJ and University Baton Rouge, LA#TAB#","institution_ids":["https://openalex.org/I102322142"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.4301,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.80486221,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"8"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9868000149726868,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cyberinfrastructure","display_name":"Cyberinfrastructure","score":0.973316490650177},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.7899554967880249},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7694176435470581},{"id":"https://openalex.org/keywords/architecture","display_name":"Architecture","score":0.5315337777137756},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.5298426151275635},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.29939278960227966},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.1703282594680786}],"concepts":[{"id":"https://openalex.org/C2776397876","wikidata":"https://www.wikidata.org/wiki/Q1450531","display_name":"Cyberinfrastructure","level":2,"score":0.973316490650177},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.7899554967880249},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7694176435470581},{"id":"https://openalex.org/C123657996","wikidata":"https://www.wikidata.org/wiki/Q12271","display_name":"Architecture","level":2,"score":0.5315337777137756},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.5298426151275635},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.29939278960227966},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.1703282594680786},{"id":"https://openalex.org/C142362112","wikidata":"https://www.wikidata.org/wiki/Q735","display_name":"Art","level":0,"score":0.0},{"id":"https://openalex.org/C153349607","wikidata":"https://www.wikidata.org/wiki/Q36649","display_name":"Visual arts","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/2016741.2016782","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2016741.2016782","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2011 TeraGrid Conference: Extreme Digital Discovery","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.550000011920929}],"awards":[{"id":"https://openalex.org/G1582172614","display_name":null,"funder_award_id":"P20RR016456","funder_id":"https://openalex.org/F4320337375","funder_display_name":"National Center for Research Resources"},{"id":"https://openalex.org/G7077592631","display_name":null,"funder_award_id":"910812","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337375","display_name":"National Center for Research Resources","ror":"https://ror.org/04pw6fb54"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":23,"referenced_works":["https://openalex.org/W1483061211","https://openalex.org/W1584634214","https://openalex.org/W1978159078","https://openalex.org/W1982846447","https://openalex.org/W1998618859","https://openalex.org/W2007840010","https://openalex.org/W2028986856","https://openalex.org/W2070063001","https://openalex.org/W2071461330","https://openalex.org/W2097636949","https://openalex.org/W2099340616","https://openalex.org/W2100445717","https://openalex.org/W2100933467","https://openalex.org/W2106769579","https://openalex.org/W2108735831","https://openalex.org/W2109768544","https://openalex.org/W2118526609","https://openalex.org/W2157052506","https://openalex.org/W2158534713","https://openalex.org/W2163347317","https://openalex.org/W2403009300","https://openalex.org/W2412274864","https://openalex.org/W2616754551"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W273500195","https://openalex.org/W2043019925","https://openalex.org/W4236056781","https://openalex.org/W4399254454","https://openalex.org/W4293768956","https://openalex.org/W2773781927","https://openalex.org/W2184477657","https://openalex.org/W90628286"],"abstract_inverted_index":{"This":[0],"work":[1],"is":[2,23,29],"predicated":[3],"on":[4],"three":[5],"important":[6],"trends:":[7],"(i)":[8],"that":[9,28,36,68,82,98,135,165],"the":[10,20,53,72,84,87,120,149,167],"importance,":[11],"impact":[12],"and":[13,55,66,80,109,115,132,154,163],"percentage":[14],"of":[15,71,86,90,151,173],"TeraGrid/XD":[16],"resources":[17,50],"assigned":[18],"to":[19,40,47,102,169],"life":[21],"sciences":[22],"increasing":[24],"at":[25],"a":[26,42,58,144,171],"rate":[27],"probably":[30],"greater":[31],"than":[32],"other":[33],"disciplines,":[34],"(ii)":[35],"gateways":[37,104,134,158],"have":[38],"proven":[39],"be":[41,100,141],"very":[43,59],"effective":[44,133],"access":[45,64],"mechanism":[46],"distributed":[48,91],"HPC":[49],"provided":[51],"by":[52],"TeraGrid/XD,":[54,95],"in":[56,69,105],"particular":[57],"successful":[60],"model":[61],"for":[62,112,143],"shared/community":[63],"models,":[65],"(iii)":[67],"spite":[70],"previous":[73],"two":[74],"points":[75],"there":[76],"are":[77],"missing":[78],"capabilities":[79],"abstractions":[81],"enable":[83],"use":[85,166],"collective":[88],"capacity":[89],"cyberinfrastructure":[92],"such":[93],"as":[94],"especially":[96],"those":[97],"can":[99,140],"used":[101],"develop":[103],"an":[106],"easy,":[107],"extensible":[108],"scalable":[110,138],"fashion":[111],"both":[113],"compute":[114],"data-intensive":[116],"applications.":[117,146],"We":[118,147],"introduce":[119],"SAGA-based,":[121],"Dynamic":[122],"Application":[123],"Runtime":[124],"Environment":[125],"(DARE)":[126],"framework":[127],"from":[128],"which":[129],"extensible,":[130],"versatile":[131],"seamlessly":[136],"utilize":[137],"infrastructure":[139],"built":[142],"life-science":[145,157,174],"discuss":[148],"architecture":[150],"DARE-based":[152],"gateways,":[153],"four":[155],"specific":[156],"--":[159],"DARE-RFOLD,":[160],"DARE-DOCK,":[161],"DARE-HTHP":[162],"DARE-NGS,":[164],"DARE-framework":[168],"support":[170],"wide-range":[172],"capabilities.":[175]},"counts_by_year":[{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":2}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
