{"id":"https://openalex.org/W2060787023","doi":"https://doi.org/10.1145/1988688.1988756","title":"Semantic systems biology","display_name":"Semantic systems biology","publication_year":2011,"publication_date":"2011-05-25","ids":{"openalex":"https://openalex.org/W2060787023","doi":"https://doi.org/10.1145/1988688.1988756","mag":"2060787023"},"language":"en","primary_location":{"id":"doi:10.1145/1988688.1988756","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1988688.1988756","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the International Conference on Web Intelligence, Mining and Semantics","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5059590876","display_name":"Erick Antezana","orcid":"https://orcid.org/0000-0002-2497-8236"},"institutions":[{"id":"https://openalex.org/I204778367","display_name":"Norwegian University of Science and Technology","ror":"https://ror.org/05xg72x27","country_code":"NO","type":"education","lineage":["https://openalex.org/I204778367"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Erick Antezana","raw_affiliation_strings":["Norwegian University of Science and Technology (NTNU), H\u00f8gskoleringen, Trondheim, Norway"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Norwegian University of Science and Technology (NTNU), H\u00f8gskoleringen, Trondheim, Norway","institution_ids":["https://openalex.org/I204778367"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083985501","display_name":"Ward Blond\u00e9","orcid":"https://orcid.org/0000-0001-7624-4069"},"institutions":[{"id":"https://openalex.org/I2801227569","display_name":"Ghent University Hospital","ror":"https://ror.org/00xmkp704","country_code":"BE","type":"healthcare","lineage":["https://openalex.org/I2801227569"]},{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Ward Blond\u00e9","raw_affiliation_strings":["Ghent University, Ghent, Belgium","[Ghent University, Ghent, BeLgium]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ghent University, Ghent, Belgium","institution_ids":["https://openalex.org/I2801227569"]},{"raw_affiliation_string":"[Ghent University, Ghent, BeLgium]","institution_ids":["https://openalex.org/I32597200"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008629865","display_name":"Aravind Venkatesan","orcid":"https://orcid.org/0000-0003-4019-1940"},"institutions":[{"id":"https://openalex.org/I204778367","display_name":"Norwegian University of Science and Technology","ror":"https://ror.org/05xg72x27","country_code":"NO","type":"education","lineage":["https://openalex.org/I204778367"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Aravind Venkatesan","raw_affiliation_strings":["Norwegian University of Science and Technology (NTNU), H\u00f8gskoleringen, Trondheim, Norway"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Norwegian University of Science and Technology (NTNU), H\u00f8gskoleringen, Trondheim, Norway","institution_ids":["https://openalex.org/I204778367"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012437460","display_name":"Bernard De Baets","orcid":"https://orcid.org/0000-0002-3876-620X"},"institutions":[{"id":"https://openalex.org/I2801227569","display_name":"Ghent University Hospital","ror":"https://ror.org/00xmkp704","country_code":"BE","type":"healthcare","lineage":["https://openalex.org/I2801227569"]},{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Bernard De Baets","raw_affiliation_strings":["Ghent University, Ghent, Belgium","[Ghent University, Ghent, BeLgium]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ghent University, Ghent, Belgium","institution_ids":["https://openalex.org/I2801227569"]},{"raw_affiliation_string":"[Ghent University, Ghent, BeLgium]","institution_ids":["https://openalex.org/I32597200"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080056836","display_name":"Vladimir Mironov","orcid":"https://orcid.org/0000-0002-9454-5823"},"institutions":[{"id":"https://openalex.org/I204778367","display_name":"Norwegian University of Science and Technology","ror":"https://ror.org/05xg72x27","country_code":"NO","type":"education","lineage":["https://openalex.org/I204778367"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Vladimir Mironov","raw_affiliation_strings":["Norwegian University of Science and Technology (NTNU), H\u00f8gskoleringen, Trondheim, Norway"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Norwegian University of Science and Technology (NTNU), H\u00f8gskoleringen, Trondheim, Norway","institution_ids":["https://openalex.org/I204778367"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5077915624","display_name":"Martin Kuiper","orcid":"https://orcid.org/0000-0002-1171-9876"},"institutions":[{"id":"https://openalex.org/I204778367","display_name":"Norwegian University of Science and Technology","ror":"https://ror.org/05xg72x27","country_code":"NO","type":"education","lineage":["https://openalex.org/I204778367"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Martin Kuiper","raw_affiliation_strings":["Norwegian University of Science and Technology (NTNU), H\u00f8gskoleringen, Trondheim, Norway"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Norwegian University of Science and Technology (NTNU), H\u00f8gskoleringen, Trondheim, Norway","institution_ids":["https://openalex.org/I204778367"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.9941,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.78441663,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"5"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9919999837875366,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7341850399971008},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.6799823641777039},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.6089454293251038},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.555147647857666},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5256855487823486},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.4956132173538208},{"id":"https://openalex.org/keywords/frame","display_name":"Frame (networking)","score":0.4766051173210144},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.45379531383514404},{"id":"https://openalex.org/keywords/social-semantic-web","display_name":"Social Semantic Web","score":0.4294894337654114},{"id":"https://openalex.org/keywords/semantic-analytics","display_name":"Semantic analytics","score":0.41735589504241943},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.2987818121910095},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.14979076385498047},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.13051897287368774},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.12931543588638306},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.08324548602104187}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7341850399971008},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.6799823641777039},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.6089454293251038},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.555147647857666},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5256855487823486},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.4956132173538208},{"id":"https://openalex.org/C126042441","wikidata":"https://www.wikidata.org/wiki/Q1324888","display_name":"Frame (networking)","level":2,"score":0.4766051173210144},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.45379531383514404},{"id":"https://openalex.org/C534406577","wikidata":"https://www.wikidata.org/wiki/Q7550843","display_name":"Social Semantic Web","level":3,"score":0.4294894337654114},{"id":"https://openalex.org/C148792806","wikidata":"https://www.wikidata.org/wiki/Q7449046","display_name":"Semantic analytics","level":4,"score":0.41735589504241943},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.2987818121910095},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.14979076385498047},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.13051897287368774},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.12931543588638306},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.08324548602104187},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/1988688.1988756","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1988688.1988756","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the International Conference on Web Intelligence, Mining and Semantics","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3848078232","display_name":null,"funder_award_id":"LSHG-CT-2004-512143","funder_id":"https://openalex.org/F4320334962","funder_display_name":"Sixth Framework Programme"}],"funders":[{"id":"https://openalex.org/F4320334962","display_name":"Sixth Framework Programme","ror":"https://ror.org/00k4n6c32"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":20,"referenced_works":["https://openalex.org/W407632632","https://openalex.org/W1651004564","https://openalex.org/W1978486653","https://openalex.org/W1993010157","https://openalex.org/W2096525273","https://openalex.org/W2108177663","https://openalex.org/W2108491719","https://openalex.org/W2113142309","https://openalex.org/W2129994470","https://openalex.org/W2134418889","https://openalex.org/W2136482257","https://openalex.org/W2146827200","https://openalex.org/W2160845726","https://openalex.org/W2161062388","https://openalex.org/W2165685472","https://openalex.org/W2169049983","https://openalex.org/W2171672270","https://openalex.org/W4211054902","https://openalex.org/W4245803912","https://openalex.org/W4399406577"],"related_works":["https://openalex.org/W2349698472","https://openalex.org/W2023110884","https://openalex.org/W2366430559","https://openalex.org/W1985801232","https://openalex.org/W2359143405","https://openalex.org/W2348459908","https://openalex.org/W2151801904","https://openalex.org/W2005492920","https://openalex.org/W933881244","https://openalex.org/W1534448889"],"abstract_inverted_index":{"The":[0,84],"vast":[1],"amounts":[2],"of":[3,31,35,49,66,74,129],"knowledge":[4,34,77,117],"in":[5,17,39,76],"the":[6,11,29,60,67,103,130,134,143],"biomedical":[7],"domain":[8],"have":[9],"paved":[10],"way":[12],"for":[13],"a":[14,36,40,46,72],"new":[15],"paradigm":[16],"biological":[18,37,50,69],"research":[19],"called":[20],"Systems":[21,98],"Biology,":[22],"essentially":[23],"an":[24,127],"approach":[25,44,106],"that":[26,79],"relies":[27],"on":[28,148],"integration":[30,55],"all":[32],"available":[33],"system":[38],"single":[41],"model.":[42],"This":[43],"promotes":[45],"comprehensive":[47],"understanding":[48],"systems,":[51],"driven":[52],"by":[53],"data":[54,70,114],"and":[56,64,121],"mathematical":[57],"modelling.":[58],"However,":[59],"sheer":[61],"volume,":[62],"variation":[63],"complexity":[65],"current":[68],"pose":[71],"number":[73],"hurdles":[75],"management":[78],"need":[80],"to":[81,90,111,138],"be":[82],"overcome.":[83],"Semantic":[85,97],"Web":[86],"offers":[87],"various":[88],"solutions":[89],"these":[91],"challenges.":[92],"With":[93],"our":[94,139,149],"initiative,":[95],"named":[96],"Biology":[99],"(SSB),":[100],"we":[101,125],"augment":[102],"systems":[104],"biology":[105],"with":[107,133],"semantic":[108],"web":[109],"technologies":[110],"enable":[112],"smooth":[113],"integration,":[115],"rigorous":[116],"representation,":[118],"efficient":[119],"querying,":[120],"hypothesis":[122],"generation.":[123],"Here":[124],"present":[126],"overview":[128],"projects":[131],"associated":[132],"SSB":[135,144],"initiative.":[136],"Access":[137],"resources":[140],"developed":[141],"within":[142],"frame":[145],"is":[146],"provided":[147],"website:":[150],"http://www.semantic-systems-biology.org.":[151]},"counts_by_year":[{"year":2015,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
