{"id":"https://openalex.org/W2007266887","doi":"https://doi.org/10.1145/1982185.1982206","title":"BioTRON","display_name":"BioTRON","publication_year":2011,"publication_date":"2011-03-21","ids":{"openalex":"https://openalex.org/W2007266887","doi":"https://doi.org/10.1145/1982185.1982206","mag":"2007266887"},"language":"en","primary_location":{"id":"doi:10.1145/1982185.1982206","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1982185.1982206","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2011 ACM Symposium on Applied Computing","raw_type":"proceedings-article"},"type":"preprint","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5022322296","display_name":"Valeria Fionda","orcid":"https://orcid.org/0000-0002-7018-1324"},"institutions":[{"id":"https://openalex.org/I171543936","display_name":"Free University of Bozen-Bolzano","ror":"https://ror.org/012ajp527","country_code":"IT","type":"education","lineage":["https://openalex.org/I171543936"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Valeria Fionda","raw_affiliation_strings":["Free University of Bozen-Bolzano, Italy"],"affiliations":[{"raw_affiliation_string":"Free University of Bozen-Bolzano, Italy","institution_ids":["https://openalex.org/I171543936"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5086627069","display_name":"Giuseppe Pirr\u00f2","orcid":"https://orcid.org/0000-0002-7499-5798"},"institutions":[{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en informatique et en automatique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1326498283"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Giuseppe Pirr\u00f3","raw_affiliation_strings":["INRIA, Grenoble Rh\u00f4ne-Alpes, France"],"affiliations":[{"raw_affiliation_string":"INRIA, Grenoble Rh\u00f4ne-Alpes, France","institution_ids":["https://openalex.org/I1326498283"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5022322296"],"corresponding_institution_ids":["https://openalex.org/I171543936"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.07534594,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"77","last_page":"82"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9937999844551086,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7951287031173706},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.7543500661849976},{"id":"https://openalex.org/keywords/focus","display_name":"Focus (optics)","score":0.595944344997406},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.5738554000854492},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.45822274684906006},{"id":"https://openalex.org/keywords/mechanism","display_name":"Mechanism (biology)","score":0.42770740389823914},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.3998015820980072},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.1728496551513672},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.13023021817207336}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7951287031173706},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.7543500661849976},{"id":"https://openalex.org/C192209626","wikidata":"https://www.wikidata.org/wiki/Q190909","display_name":"Focus (optics)","level":2,"score":0.595944344997406},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.5738554000854492},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.45822274684906006},{"id":"https://openalex.org/C89611455","wikidata":"https://www.wikidata.org/wiki/Q6804646","display_name":"Mechanism (biology)","level":2,"score":0.42770740389823914},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.3998015820980072},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.1728496551513672},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.13023021817207336},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1145/1982185.1982206","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1982185.1982206","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2011 ACM Symposium on Applied Computing","raw_type":"proceedings-article"},{"id":"pmh:oai:HAL:hal-00781045v1","is_oa":false,"landing_page_url":"https://inria.hal.science/hal-00781045","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Proc. 26th ACM symposium on applied computing (SAC), Mar 2011, Taipei, Taiwan. pp.77-82, &#x27E8;10.1145/1982185.1982206&#x27E9;","raw_type":"Conference papers"},{"id":"pmh:oai:iris.uniroma1.it:11573/1274404","is_oa":false,"landing_page_url":"http://hdl.handle.net/11573/1274404","pdf_url":null,"source":{"id":"https://openalex.org/S4377196107","display_name":"IRIS Research product catalog (Sapienza University of Rome)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/conferenceObject"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.4000000059604645,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":23,"referenced_works":["https://openalex.org/W126044612","https://openalex.org/W1508649024","https://openalex.org/W1526507883","https://openalex.org/W1649804825","https://openalex.org/W1780933788","https://openalex.org/W1968326914","https://openalex.org/W1971341890","https://openalex.org/W1978697738","https://openalex.org/W1984249061","https://openalex.org/W1997343461","https://openalex.org/W2091931698","https://openalex.org/W2103017472","https://openalex.org/W2109850531","https://openalex.org/W2110693008","https://openalex.org/W2128374023","https://openalex.org/W2137015675","https://openalex.org/W2142678478","https://openalex.org/W2145550746","https://openalex.org/W2148853951","https://openalex.org/W2155320925","https://openalex.org/W2161427213","https://openalex.org/W2964646613","https://openalex.org/W4210623056"],"related_works":["https://openalex.org/W1981780420","https://openalex.org/W2182707996","https://openalex.org/W45233828","https://openalex.org/W2964988449","https://openalex.org/W2397952901","https://openalex.org/W2029380707","https://openalex.org/W4255934811","https://openalex.org/W2465382974","https://openalex.org/W2010229520","https://openalex.org/W2547528905"],"abstract_inverted_index":{"Bioinformatics":[0],"tasks":[1,91],"may":[2],"become":[3],"very":[4],"complex":[5,32,60,89],"and":[6,14,20,30],"usually":[7],"require":[8],"to":[9,44,74,87,102],"manually":[10],"integrate":[11,104],"both":[12],"data":[13,62],"results":[15],"from":[16],"different":[17],"knowledge":[18],"sources":[19],"tools.":[21],"In":[22],"this":[23,47,71],"scenario,":[24],"an":[25],"integrated":[26],"environment":[27],"for":[28],"designing":[29],"executing":[31],"biological":[33,61,90,94],"workflows":[34],"is":[35,73],"a":[36,100,117],"must.":[37],"Even":[38],"though":[39],"several":[40],"efforts":[41],"are":[42],"trying":[43],"cope":[45],"with":[46,116],"aspects,":[48],"they":[49],"mostly":[50],"focus":[51],"on":[52],"gene":[53],"or":[54],"protein":[55],"sequence":[56],"analysis":[57],"underestimating":[58],"more":[59],"such":[63,92],"as":[64,93],"molecular":[65],"interaction":[66],"data.":[67],"The":[68],"aim":[69],"of":[70,124],"paper":[72],"present":[75,111],"the":[76,83,112,122,125],"BioTRON":[77,97,113],"system,":[78],"which":[79,120],"supports":[80],"biologists":[81],"in":[82],"various":[84],"steps":[85],"necessary":[86],"perform":[88],"network":[95],"comparison.":[96],"also":[98],"features":[99],"mechanism":[101],"automatically":[103],"even":[105],"existing":[106],"on-line":[107],"Web":[108],"services.":[109],"We":[110],"architecture":[114],"along":[115],"real":[118],"example,":[119],"shows":[121],"suitability":[123],"tool.":[126],"\u00a9":[127],"2011":[128],"ACM.":[129]},"counts_by_year":[],"updated_date":"2026-02-09T09:26:11.010843","created_date":"2016-06-24T00:00:00"}
