{"id":"https://openalex.org/W1994860139","doi":"https://doi.org/10.1145/1924559.1924584","title":"Cell volume estimation from a sparse collection of noisy confocal image slices","display_name":"Cell volume estimation from a sparse collection of noisy confocal image slices","publication_year":2010,"publication_date":"2010-12-12","ids":{"openalex":"https://openalex.org/W1994860139","doi":"https://doi.org/10.1145/1924559.1924584","mag":"1994860139"},"language":"en","primary_location":{"id":"doi:10.1145/1924559.1924584","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1924559.1924584","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Seventh Indian Conference on Computer Vision, Graphics and Image Processing","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101611838","display_name":"Anirban Chakraborty","orcid":"https://orcid.org/0000-0002-6946-9152"},"institutions":[{"id":"https://openalex.org/I103635307","display_name":"University of California, Riverside","ror":"https://ror.org/03nawhv43","country_code":"US","type":"education","lineage":["https://openalex.org/I103635307"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Anirban Chakraborty","raw_affiliation_strings":["University of California, Riverside, CA"],"affiliations":[{"raw_affiliation_string":"University of California, Riverside, CA","institution_ids":["https://openalex.org/I103635307"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100343855","display_name":"Min Liu","orcid":"https://orcid.org/0000-0001-6515-5095"},"institutions":[{"id":"https://openalex.org/I103635307","display_name":"University of California, Riverside","ror":"https://ror.org/03nawhv43","country_code":"US","type":"education","lineage":["https://openalex.org/I103635307"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Min Liu","raw_affiliation_strings":["University of California, Riverside, CA"],"affiliations":[{"raw_affiliation_string":"University of California, Riverside, CA","institution_ids":["https://openalex.org/I103635307"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074474110","display_name":"Katya Mkrtchyan","orcid":"https://orcid.org/0000-0002-7482-2096"},"institutions":[{"id":"https://openalex.org/I103635307","display_name":"University of California, Riverside","ror":"https://ror.org/03nawhv43","country_code":"US","type":"education","lineage":["https://openalex.org/I103635307"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Katya Mkrtchyan","raw_affiliation_strings":["University of California, Riverside, CA"],"affiliations":[{"raw_affiliation_string":"University of California, Riverside, CA","institution_ids":["https://openalex.org/I103635307"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110174421","display_name":"G. Venugopala Reddy","orcid":null},"institutions":[{"id":"https://openalex.org/I103635307","display_name":"University of California, Riverside","ror":"https://ror.org/03nawhv43","country_code":"US","type":"education","lineage":["https://openalex.org/I103635307"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"G. Venugopala Reddy","raw_affiliation_strings":["University of California, Riverside, CA"],"affiliations":[{"raw_affiliation_string":"University of California, Riverside, CA","institution_ids":["https://openalex.org/I103635307"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5004732580","display_name":"Amit K. Roy\u2013Chowdhury","orcid":"https://orcid.org/0000-0001-6690-9725"},"institutions":[{"id":"https://openalex.org/I103635307","display_name":"University of California, Riverside","ror":"https://ror.org/03nawhv43","country_code":"US","type":"education","lineage":["https://openalex.org/I103635307"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Amit Roy-Chowdhury","raw_affiliation_strings":["University of California, Riverside, CA"],"affiliations":[{"raw_affiliation_string":"University of California, Riverside, CA","institution_ids":["https://openalex.org/I103635307"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5101611838"],"corresponding_institution_ids":["https://openalex.org/I103635307"],"apc_list":null,"apc_paid":null,"fwci":0.588,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.72086677,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"183","last_page":"189"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11164","display_name":"Remote Sensing and LiDAR Applications","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2305","display_name":"Environmental Engineering"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11164","display_name":"Remote Sensing and LiDAR Applications","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2305","display_name":"Environmental Engineering"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10111","display_name":"Remote Sensing in Agriculture","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T14365","display_name":"Leaf Properties and Growth Measurement","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ellipsoid","display_name":"Ellipsoid","score":0.859159529209137},{"id":"https://openalex.org/keywords/volume","display_name":"Volume (thermodynamics)","score":0.6702783107757568},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5194041728973389},{"id":"https://openalex.org/keywords/confocal","display_name":"Confocal","score":0.4907625615596771},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.4648294448852539},{"id":"https://openalex.org/keywords/confocal-microscopy","display_name":"Confocal microscopy","score":0.4233860969543457},{"id":"https://openalex.org/keywords/confocal-laser-scanning-microscopy","display_name":"Confocal laser scanning microscopy","score":0.4111388325691223},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.40436941385269165},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.40032070875167847},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3665481209754944},{"id":"https://openalex.org/keywords/optics","display_name":"Optics","score":0.24197518825531006},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.17200011014938354},{"id":"https://openalex.org/keywords/biophysics","display_name":"Biophysics","score":0.15299645066261292},{"id":"https://openalex.org/keywords/geology","display_name":"Geology","score":0.1321471929550171},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.12082591652870178}],"concepts":[{"id":"https://openalex.org/C57489055","wikidata":"https://www.wikidata.org/wiki/Q190046","display_name":"Ellipsoid","level":2,"score":0.859159529209137},{"id":"https://openalex.org/C20556612","wikidata":"https://www.wikidata.org/wiki/Q4469374","display_name":"Volume (thermodynamics)","level":2,"score":0.6702783107757568},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5194041728973389},{"id":"https://openalex.org/C136009344","wikidata":"https://www.wikidata.org/wiki/Q336201","display_name":"Confocal","level":2,"score":0.4907625615596771},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.4648294448852539},{"id":"https://openalex.org/C2779178360","wikidata":"https://www.wikidata.org/wiki/Q902045","display_name":"Confocal microscopy","level":2,"score":0.4233860969543457},{"id":"https://openalex.org/C88412794","wikidata":"https://www.wikidata.org/wiki/Q902045","display_name":"Confocal laser scanning microscopy","level":2,"score":0.4111388325691223},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.40436941385269165},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.40032070875167847},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3665481209754944},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.24197518825531006},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.17200011014938354},{"id":"https://openalex.org/C12554922","wikidata":"https://www.wikidata.org/wiki/Q7100","display_name":"Biophysics","level":1,"score":0.15299645066261292},{"id":"https://openalex.org/C127313418","wikidata":"https://www.wikidata.org/wiki/Q1069","display_name":"Geology","level":0,"score":0.1321471929550171},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.12082591652870178},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/1924559.1924584","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1924559.1924584","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Seventh Indian Conference on Computer Vision, Graphics and Image Processing","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5827277253","display_name":null,"funder_award_id":"ChemGen IGERT DGE 0504249IOS-0718046IIS-0712253Video Bioinformatics IGERT DGE 0903667","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7498137559","display_name":null,"funder_award_id":"ChemGen IGERT DGE 0504249IOS-0718046IIS-0712253Video Bioinformatics IGERT DGE 0903667","funder_id":"https://openalex.org/F4320337399","funder_display_name":"Division of Integrative Organismal Systems"},{"id":"https://openalex.org/G88598563","display_name":null,"funder_award_id":"ChemGen IGERT DGE 0504249IOS-0718046IIS-0712253Video Bioinformatics IGERT DGE 0903667","funder_id":"https://openalex.org/F4320337368","funder_display_name":"Division of Graduate Education"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320337368","display_name":"Division of Graduate Education","ror":"https://ror.org/00whkrf32"},{"id":"https://openalex.org/F4320337399","display_name":"Division of Integrative Organismal Systems","ror":"https://ror.org/01rvays47"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":15,"referenced_works":["https://openalex.org/W299997704","https://openalex.org/W1874027545","https://openalex.org/W1939884288","https://openalex.org/W2034432063","https://openalex.org/W2056124912","https://openalex.org/W2102957735","https://openalex.org/W2116040950","https://openalex.org/W2116941191","https://openalex.org/W2123385229","https://openalex.org/W2129941787","https://openalex.org/W2138663260","https://openalex.org/W2158713176","https://openalex.org/W2335949705","https://openalex.org/W2408302331","https://openalex.org/W2412789385"],"related_works":["https://openalex.org/W2726111829","https://openalex.org/W4250585504","https://openalex.org/W2008049857","https://openalex.org/W1978803831","https://openalex.org/W2105513520","https://openalex.org/W2580002495","https://openalex.org/W2056668469","https://openalex.org/W82035557","https://openalex.org/W4285171187","https://openalex.org/W1884877925"],"abstract_inverted_index":{"Measurement":[0],"and":[1,13,21,37,151,192],"quantification":[2],"of":[3,6,43,53,57,66,72,83,117,122,131,220,226,234,247],"the":[4,40,44,54,120,129,153,164,181,195,212],"volume":[5,42,58,71,121,155,232],"cells":[7,45,103,225,236],"are":[8,237],"very":[9],"useful":[10],"for":[11,148],"analyzing":[12],"understanding":[14],"cellular":[15],"behavior,":[16],"such":[17,89],"as":[18,134,136],"cell":[19,35,67,87,125,150,161,176],"growth":[20],"differentiation.":[22],"One":[23],"popular":[24],"practice":[25],"is":[26,93,133,194,242],"to":[27,33,98,102,107,138,174,184,187,240],"use":[28],"Confocal":[29],"Laser":[30],"Scanning":[31],"Microscopy(CLSM)":[32],"image":[34,73],"slices":[36,68,140,162],"then":[38],"reconstruct":[39],"3-D":[41],"from":[46,104,244],"these":[47],"serial":[48],"optical":[49],"slices.":[50],"However,":[51],"all":[52,159],"current":[55],"methods":[56],"estimation":[59],"using":[60,126],"CLSM":[61,84,127,218],"imaging":[62],"require":[63],"large":[64],"number":[65],"(i.e.":[69],"high":[70,90],"data).":[74],"But":[75],"in":[76,81,96,163,190],"many":[77],"practical":[78],"situations,":[79],"especially":[80],"case":[82],"based":[85,170],"live":[86],"imaging,":[88],"depth":[91],"resolution":[92],"not":[94],"feasible":[95],"order":[97],"avoid":[99],"photodynamic":[100],"damage":[101],"prolonged":[105],"exposure":[106],"laser.":[108],"In":[109],"this":[110,115],"work,":[111],"we":[112,198],"have":[113],"addressed":[114],"problem":[116],"finding":[118],"out":[119],"a":[123,149,200],"plant":[124,228],"when":[128],"amount":[130],"data":[132],"limited":[135],"two":[137],"three":[139,160],"per":[141],"cell.":[142],"We":[143,210],"assume":[144],"an":[145],"ellipsoid":[146,156],"model":[147,227],"estimate":[152],"minimum":[154],"that":[157,193],"encloses":[158],"3D":[165],"stack.":[166],"The":[167,231],"level":[168],"set":[169],"segmentation":[171],"often":[172],"tends":[173],"produce":[175],"slice":[177],"areas":[178],"less":[179],"than":[180],"actual":[182],"due":[183],"poor":[185],"signal":[186],"noise":[188],"ratio":[189],"images":[191,219],"reason":[196],"why":[197],"choose":[199],"Minimum":[201],"Volume":[202],"Enclosing":[203],"Ellipsoid":[204],"over":[205],"mean":[206],"or":[207],"best-fit":[208],"ellipsoids.":[209],"tested":[211],"proposed":[213],"computational":[214],"method":[215],"on":[216],"time-lapse":[217],"Shoot":[221],"Apical":[222],"Meristem":[223],"(SAM)":[224],"Arabidopsis":[229],"Thaliana.":[230],"estimates":[233],"individual":[235],"reasonably":[238],"close":[239],"what":[241],"expected":[243],"biological":[245],"point":[246],"view.":[248]},"counts_by_year":[{"year":2012,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}