{"id":"https://openalex.org/W2079159530","doi":"https://doi.org/10.1145/1882992.1883052","title":"Automatic patient search for breast cancer clinical trials using free-text medical reports","display_name":"Automatic patient search for breast cancer clinical trials using free-text medical reports","publication_year":2010,"publication_date":"2010-11-11","ids":{"openalex":"https://openalex.org/W2079159530","doi":"https://doi.org/10.1145/1882992.1883052","mag":"2079159530"},"language":"en","primary_location":{"id":"doi:10.1145/1882992.1883052","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1882992.1883052","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 1st ACM International Health Informatics Symposium","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100433054","display_name":"Jun Zhang","orcid":"https://orcid.org/0000-0001-6990-5324"},"institutions":[{"id":"https://openalex.org/I43579087","display_name":"University of Wisconsin\u2013Milwaukee","ror":"https://ror.org/031q21x57","country_code":"US","type":"education","lineage":["https://openalex.org/I43579087"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jun Zhang","raw_affiliation_strings":["University of Wisconsin-Milwaukee, Milwaukee, WI, USA","University of Wisconsin - Milwaukee, Milwaukee, WI, USA#TAB#"],"affiliations":[{"raw_affiliation_string":"University of Wisconsin-Milwaukee, Milwaukee, WI, USA","institution_ids":["https://openalex.org/I43579087"]},{"raw_affiliation_string":"University of Wisconsin - Milwaukee, Milwaukee, WI, USA#TAB#","institution_ids":["https://openalex.org/I43579087"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101973026","display_name":"Yingying Gu","orcid":"https://orcid.org/0000-0002-3802-4361"},"institutions":[{"id":"https://openalex.org/I43579087","display_name":"University of Wisconsin\u2013Milwaukee","ror":"https://ror.org/031q21x57","country_code":"US","type":"education","lineage":["https://openalex.org/I43579087"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yingying Gu","raw_affiliation_strings":["University of Wisconsin-Milwaukee, Milwaukee, WI, USA","University of Wisconsin - Milwaukee, Milwaukee, WI, USA#TAB#"],"affiliations":[{"raw_affiliation_string":"University of Wisconsin-Milwaukee, Milwaukee, WI, USA","institution_ids":["https://openalex.org/I43579087"]},{"raw_affiliation_string":"University of Wisconsin - Milwaukee, Milwaukee, WI, USA#TAB#","institution_ids":["https://openalex.org/I43579087"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089260859","display_name":"Weisong Liu","orcid":"https://orcid.org/0000-0003-3825-5597"},"institutions":[{"id":"https://openalex.org/I43579087","display_name":"University of Wisconsin\u2013Milwaukee","ror":"https://ror.org/031q21x57","country_code":"US","type":"education","lineage":["https://openalex.org/I43579087"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Weisong Liu","raw_affiliation_strings":["University of Wisconsin-Milwaukee, Milwaukee, WI, USA","University of Wisconsin - Milwaukee, Milwaukee, WI, USA#TAB#"],"affiliations":[{"raw_affiliation_string":"University of Wisconsin-Milwaukee, Milwaukee, WI, USA","institution_ids":["https://openalex.org/I43579087"]},{"raw_affiliation_string":"University of Wisconsin - Milwaukee, Milwaukee, WI, USA#TAB#","institution_ids":["https://openalex.org/I43579087"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103157598","display_name":"Wen Hu","orcid":"https://orcid.org/0000-0002-8961-437X"},"institutions":[{"id":"https://openalex.org/I43579087","display_name":"University of Wisconsin\u2013Milwaukee","ror":"https://ror.org/031q21x57","country_code":"US","type":"education","lineage":["https://openalex.org/I43579087"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Wen Hu","raw_affiliation_strings":["University of Wisconsin-Milwaukee, Milwaukee, WI, USA","University of Wisconsin - Milwaukee, Milwaukee, WI, USA#TAB#"],"affiliations":[{"raw_affiliation_string":"University of Wisconsin-Milwaukee, Milwaukee, WI, USA","institution_ids":["https://openalex.org/I43579087"]},{"raw_affiliation_string":"University of Wisconsin - Milwaukee, Milwaukee, WI, USA#TAB#","institution_ids":["https://openalex.org/I43579087"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Tian Zhao","orcid":null},"institutions":[{"id":"https://openalex.org/I43579087","display_name":"University of Wisconsin\u2013Milwaukee","ror":"https://ror.org/031q21x57","country_code":"US","type":"education","lineage":["https://openalex.org/I43579087"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tian Zhao","raw_affiliation_strings":["University of Wisconsin-Milwaukee, Milwaukee, WI, USA","University of Wisconsin - Milwaukee, Milwaukee, WI, USA#TAB#"],"affiliations":[{"raw_affiliation_string":"University of Wisconsin-Milwaukee, Milwaukee, WI, USA","institution_ids":["https://openalex.org/I43579087"]},{"raw_affiliation_string":"University of Wisconsin - Milwaukee, Milwaukee, WI, USA#TAB#","institution_ids":["https://openalex.org/I43579087"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009064531","display_name":"Xiangming Mu","orcid":"https://orcid.org/0000-0002-5770-6114"},"institutions":[{"id":"https://openalex.org/I43579087","display_name":"University of Wisconsin\u2013Milwaukee","ror":"https://ror.org/031q21x57","country_code":"US","type":"education","lineage":["https://openalex.org/I43579087"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xiangming Mu","raw_affiliation_strings":["University of Wisconsin-Milwaukee, Milwaukee, WI, USA","University of Wisconsin - Milwaukee, Milwaukee, WI, USA#TAB#"],"affiliations":[{"raw_affiliation_string":"University of Wisconsin-Milwaukee, Milwaukee, WI, USA","institution_ids":["https://openalex.org/I43579087"]},{"raw_affiliation_string":"University of Wisconsin - Milwaukee, Milwaukee, WI, USA#TAB#","institution_ids":["https://openalex.org/I43579087"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112489886","display_name":"James J. Marx","orcid":null},"institutions":[{"id":"https://openalex.org/I117397414","display_name":"Aurora Health Care","ror":"https://ror.org/04d5w7479","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I117397414"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"James Marx","raw_affiliation_strings":["Aurora Health Care, Milwaukee, WI, USA"],"affiliations":[{"raw_affiliation_string":"Aurora Health Care, Milwaukee, WI, USA","institution_ids":["https://openalex.org/I117397414"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084271777","display_name":"Floyd J. Frost","orcid":null},"institutions":[{"id":"https://openalex.org/I117397414","display_name":"Aurora Health Care","ror":"https://ror.org/04d5w7479","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I117397414"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Floyd Frost","raw_affiliation_strings":["Aurora Health Care, Milwaukee, WI, USA"],"affiliations":[{"raw_affiliation_string":"Aurora Health Care, Milwaukee, WI, USA","institution_ids":["https://openalex.org/I117397414"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5063874229","display_name":"Judy A. Tjoe","orcid":null},"institutions":[{"id":"https://openalex.org/I117397414","display_name":"Aurora Health Care","ror":"https://ror.org/04d5w7479","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I117397414"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Judy Tjoe","raw_affiliation_strings":["Aurora Health Care, Milwaukee, WI, USA"],"affiliations":[{"raw_affiliation_string":"Aurora Health Care, Milwaukee, WI, USA","institution_ids":["https://openalex.org/I117397414"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5100433054"],"corresponding_institution_ids":["https://openalex.org/I43579087"],"apc_list":null,"apc_paid":null,"fwci":0.6777,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.69365923,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"41","issue":null,"first_page":"405","last_page":"409"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/text-messaging","display_name":"Text messaging","score":0.6773012280464172},{"id":"https://openalex.org/keywords/clinical-trial","display_name":"Clinical trial","score":0.6595385670661926},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6495794653892517},{"id":"https://openalex.org/keywords/breast-cancer","display_name":"Breast cancer","score":0.6253487467765808},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.45445728302001953},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.41901031136512756},{"id":"https://openalex.org/keywords/medical-physics","display_name":"Medical physics","score":0.412087619304657},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.38466811180114746},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.38381361961364746},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.35021692514419556},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.3143964111804962},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.12107926607131958},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.11045297980308533},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.09276175498962402}],"concepts":[{"id":"https://openalex.org/C3018949938","wikidata":"https://www.wikidata.org/wiki/Q17166101","display_name":"Text messaging","level":2,"score":0.6773012280464172},{"id":"https://openalex.org/C535046627","wikidata":"https://www.wikidata.org/wiki/Q30612","display_name":"Clinical trial","level":2,"score":0.6595385670661926},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6495794653892517},{"id":"https://openalex.org/C530470458","wikidata":"https://www.wikidata.org/wiki/Q128581","display_name":"Breast cancer","level":3,"score":0.6253487467765808},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.45445728302001953},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.41901031136512756},{"id":"https://openalex.org/C19527891","wikidata":"https://www.wikidata.org/wiki/Q1120908","display_name":"Medical physics","level":1,"score":0.412087619304657},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.38466811180114746},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.38381361961364746},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.35021692514419556},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.3143964111804962},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.12107926607131958},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.11045297980308533},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.09276175498962402},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/1882992.1883052","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1882992.1883052","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 1st ACM International Health Informatics Symposium","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","score":0.49000000953674316,"display_name":"Quality Education"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":12,"referenced_works":["https://openalex.org/W52454957","https://openalex.org/W148633673","https://openalex.org/W182831726","https://openalex.org/W197638027","https://openalex.org/W1532325895","https://openalex.org/W1550258693","https://openalex.org/W2066770300","https://openalex.org/W2068206659","https://openalex.org/W2092543775","https://openalex.org/W2138005708","https://openalex.org/W2147152072","https://openalex.org/W6681698864"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2336574202","https://openalex.org/W1647149388","https://openalex.org/W2796209226","https://openalex.org/W1797055419","https://openalex.org/W2375584271","https://openalex.org/W1997105855","https://openalex.org/W4301030387","https://openalex.org/W2414286769","https://openalex.org/W2013223288"],"abstract_inverted_index":{"The":[0],"purpose":[1],"of":[2,83,97],"this":[3,33,54],"work":[4,66],"is":[5,56,67],"to":[6,9,93],"develop":[7],"algorithms":[8],"automatically":[10],"identify":[11],"qualified":[12],"patients":[13],"for":[14],"breast":[15],"cancer":[16],"clinical":[17,95],"trials":[18,96],"from":[19],"free-text":[20,39],"medical":[21],"reports.":[22],"Specifically,":[23],"we":[24],"developed":[25],"an":[26],"algorithm,":[27],"called":[28],"subtree":[29],"match,":[30],"that":[31,43,53],"achieves":[32],"by":[34],"finding":[35],"structural":[36],"patterns":[37],"in":[38,69],"patient":[40,85],"report":[41],"sentences":[42],"are":[44],"consistent":[45],"with":[46],"given":[47],"trial":[48],"criteria.":[49],"Experimental":[50],"results":[51],"indicate":[52],"technique":[55],"effective":[57],"and":[58,79],"performs":[59],"better":[60],"than":[61],"several":[62],"competing":[63],"techniques.":[64],"Our":[65],"useful":[68],"two":[70],"respects.":[71],"First,":[72],"it":[73,89],"can":[74,90],"potentially":[75],"increase":[76],"the":[77,81,84,94],"efficiency":[78],"reduce":[80],"cost":[82],"enrollment":[86],"process.":[87],"Second,":[88],"be":[91],"extended/adapted":[92],"other":[98],"diseases":[99]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":2}],"updated_date":"2026-04-16T08:26:57.006410","created_date":"2025-10-10T00:00:00"}
