{"id":"https://openalex.org/W2065251594","doi":"https://doi.org/10.1145/1878537.1878541","title":"SPARK","display_name":"SPARK","publication_year":2010,"publication_date":"2010-04-11","ids":{"openalex":"https://openalex.org/W2065251594","doi":"https://doi.org/10.1145/1878537.1878541","mag":"2065251594"},"language":"en","primary_location":{"id":"doi:10.1145/1878537.1878541","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1878537.1878541","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2010 Spring Simulation Multiconference","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5049517241","display_name":"Alexey Solovyev","orcid":"https://orcid.org/0000-0001-8058-5317"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alexey Solovyev","raw_affiliation_strings":["University of Pittsburgh, Pittsburgh, PA","[University of Pittsburgh, Pittsburgh, PA]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Pittsburgh, Pittsburgh, PA","institution_ids":["https://openalex.org/I170201317"]},{"raw_affiliation_string":"[University of Pittsburgh, Pittsburgh, PA]","institution_ids":["https://openalex.org/I170201317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045213074","display_name":"Maxim Mikheev","orcid":"https://orcid.org/0000-0002-4426-875X"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Maxim Mikheev","raw_affiliation_strings":["University of Pittsburgh, Pittsburgh, PA","[University of Pittsburgh, Pittsburgh, PA]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Pittsburgh, Pittsburgh, PA","institution_ids":["https://openalex.org/I170201317"]},{"raw_affiliation_string":"[University of Pittsburgh, Pittsburgh, PA]","institution_ids":["https://openalex.org/I170201317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053701097","display_name":"Leming Zhou","orcid":"https://orcid.org/0000-0003-4398-0267"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Leming Zhou","raw_affiliation_strings":["University of Pittsburgh, Pittsburgh, PA","[University of Pittsburgh, Pittsburgh, PA]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Pittsburgh, Pittsburgh, PA","institution_ids":["https://openalex.org/I170201317"]},{"raw_affiliation_string":"[University of Pittsburgh, Pittsburgh, PA]","institution_ids":["https://openalex.org/I170201317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018979051","display_name":"Joyeeta Dutta\u2010Moscato","orcid":null},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joyeeta Dutta-Moscato","raw_affiliation_strings":["University of Pittsburgh, Pittsburgh, PA","[University of Pittsburgh, Pittsburgh, PA]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Pittsburgh, Pittsburgh, PA","institution_ids":["https://openalex.org/I170201317"]},{"raw_affiliation_string":"[University of Pittsburgh, Pittsburgh, PA]","institution_ids":["https://openalex.org/I170201317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030851778","display_name":"Cordelia Ziraldo","orcid":"https://orcid.org/0000-0001-8095-4506"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Cordelia Ziraldo","raw_affiliation_strings":["University of Pittsburgh, Pittsburgh, PA","[University of Pittsburgh, Pittsburgh, PA]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Pittsburgh, Pittsburgh, PA","institution_ids":["https://openalex.org/I170201317"]},{"raw_affiliation_string":"[University of Pittsburgh, Pittsburgh, PA]","institution_ids":["https://openalex.org/I170201317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042696510","display_name":"Gary An","orcid":"https://orcid.org/0000-0003-4549-9004"},"institutions":[{"id":"https://openalex.org/I111979921","display_name":"Northwestern University","ror":"https://ror.org/000e0be47","country_code":"US","type":"education","lineage":["https://openalex.org/I111979921"]},{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gary An","raw_affiliation_strings":["University of Pittsburgh, Pittsburgh, PA and Northwestern University, Chicago, IL","University of Pittsburgh, Pittsburgh, PA and Northwestern University, Chicago, IL#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Pittsburgh, Pittsburgh, PA and Northwestern University, Chicago, IL","institution_ids":["https://openalex.org/I111979921","https://openalex.org/I170201317"]},{"raw_affiliation_string":"University of Pittsburgh, Pittsburgh, PA and Northwestern University, Chicago, IL#TAB#","institution_ids":["https://openalex.org/I111979921"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073022985","display_name":"Yoram Vodovotz","orcid":"https://orcid.org/0000-0002-4389-8768"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yoram Vodovotz","raw_affiliation_strings":["University of Pittsburgh, Pittsburgh, PA","[University of Pittsburgh, Pittsburgh, PA]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Pittsburgh, Pittsburgh, PA","institution_ids":["https://openalex.org/I170201317"]},{"raw_affiliation_string":"[University of Pittsburgh, Pittsburgh, PA]","institution_ids":["https://openalex.org/I170201317"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5076170464","display_name":"Qi Mi","orcid":"https://orcid.org/0000-0002-0197-8671"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Qi Mi","raw_affiliation_strings":["University of Pittsburgh, Pittsburgh, PA","[University of Pittsburgh, Pittsburgh, PA]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Pittsburgh, Pittsburgh, PA","institution_ids":["https://openalex.org/I170201317"]},{"raw_affiliation_string":"[University of Pittsburgh, Pittsburgh, PA]","institution_ids":["https://openalex.org/I170201317"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.5445,"has_fulltext":false,"cited_by_count":10,"citation_normalized_percentile":{"value":0.66461314,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"7"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9843000173568726,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11313","display_name":"Immune cells in cancer","score":0.9731000065803528,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/spark","display_name":"SPARK (programming language)","score":0.8445304036140442},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7127924561500549},{"id":"https://openalex.org/keywords/netlogo","display_name":"NetLogo","score":0.6184782385826111},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.5628688335418701},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.4823976755142212},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.47598376870155334},{"id":"https://openalex.org/keywords/simple","display_name":"Simple (philosophy)","score":0.44072264432907104},{"id":"https://openalex.org/keywords/graphical-user-interface","display_name":"Graphical user interface","score":0.43954554200172424},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.41034919023513794},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.33732038736343384},{"id":"https://openalex.org/keywords/simulation","display_name":"Simulation","score":0.3350110650062561},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.11759600043296814}],"concepts":[{"id":"https://openalex.org/C2781215313","wikidata":"https://www.wikidata.org/wiki/Q3493345","display_name":"SPARK (programming language)","level":2,"score":0.8445304036140442},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7127924561500549},{"id":"https://openalex.org/C167221231","wikidata":"https://www.wikidata.org/wiki/Q672307","display_name":"NetLogo","level":2,"score":0.6184782385826111},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.5628688335418701},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.4823976755142212},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.47598376870155334},{"id":"https://openalex.org/C2780586882","wikidata":"https://www.wikidata.org/wiki/Q7520643","display_name":"Simple (philosophy)","level":2,"score":0.44072264432907104},{"id":"https://openalex.org/C37789001","wikidata":"https://www.wikidata.org/wiki/Q782543","display_name":"Graphical user interface","level":2,"score":0.43954554200172424},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.41034919023513794},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.33732038736343384},{"id":"https://openalex.org/C44154836","wikidata":"https://www.wikidata.org/wiki/Q45045","display_name":"Simulation","level":1,"score":0.3350110650062561},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.11759600043296814},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/1878537.1878541","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1878537.1878541","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2010 Spring Simulation Multiconference","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals","score":0.44999998807907104}],"awards":[{"id":"https://openalex.org/G2124888240","display_name":null,"funder_award_id":"P50-GM-53789R33-HL-089082R01-HL080926","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5900893052","display_name":null,"funder_award_id":"H133E070024H133E070024","funder_id":"https://openalex.org/F4320337112","funder_display_name":"National Institute on Disability and Rehabilitation Research"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337112","display_name":"National Institute on Disability and Rehabilitation Research","ror":"https://ror.org/021adze67"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":16,"referenced_works":["https://openalex.org/W126702416","https://openalex.org/W1977523316","https://openalex.org/W1978486653","https://openalex.org/W1988059443","https://openalex.org/W1992033406","https://openalex.org/W2000003193","https://openalex.org/W2006012747","https://openalex.org/W2077563974","https://openalex.org/W2084176648","https://openalex.org/W2092578710","https://openalex.org/W2121889251","https://openalex.org/W2150704630","https://openalex.org/W2151508309","https://openalex.org/W2159532448","https://openalex.org/W2171433196","https://openalex.org/W6673870799"],"related_works":["https://openalex.org/W3023917853","https://openalex.org/W4224013512","https://openalex.org/W4252443692","https://openalex.org/W2557308315","https://openalex.org/W27898408","https://openalex.org/W2040907244","https://openalex.org/W4253502255","https://openalex.org/W2291287845","https://openalex.org/W2077428003","https://openalex.org/W2022968056"],"abstract_inverted_index":{"Multi-scale":[0],"modeling":[1,24,56,94],"of":[2,17,28,50,118,144,156],"complex":[3],"biological":[4],"systems":[5,12],"remains":[6],"a":[7,52,66,74,78,137],"central":[8],"challenge":[9],"in":[10,70,133,153,161,184],"the":[11,26,89,115,166],"biology":[13],"community.":[14],"A":[15],"method":[16],"dynamic":[18],"knowledge":[19],"representation":[20],"known":[21],"as":[22,188],"agent-based":[23,55],"enables":[25],"study":[27],"higher":[29],"level":[30],"behavior":[31],"emerging":[32],"from":[33],"discrete":[34],"events":[35],"performed":[36],"by":[37],"individual":[38],"components.In":[39],"this":[40],"work,":[41],"we":[42],"describe":[43],"SPARK":[44,64,87,178],"(Simple":[45],"Platform":[46],"for":[47,54,59,82,93],"Agent-based":[48],"Representation":[49],"Knowledge),":[51],"framework":[53],"specifically":[57],"designed":[58],"systems-level":[60],"biomedical":[61,95,134],"model":[62],"development.":[63],"is":[65],"standalone":[67],"application":[68],"written":[69],"Java.":[71],"It":[72],"provides":[73],"user-friendly":[75],"interface,":[76],"and":[77,110,129,148,164,192],"simple":[79],"programming":[80],"language":[81],"developing":[83],"Agent-Based":[84],"Models":[85,155],"(ABMs).":[86],"has":[88],"following":[90],"features":[91],"specialized":[92],"systems:":[96],"1)":[97],"continuous":[98],"space":[99],"that":[100,112,125],"can":[101,113,126],"simulate":[102,128],"real":[103],"physical":[104],"space;":[105],"2)":[106],"flexible":[107],"agent":[108],"size":[109],"shape":[111],"represent":[114],"relative":[116],"proportions":[117],"various":[119],"cell":[120],"types;":[121],"3)":[122],"multiple":[123,131],"spaces":[124],"concurrently":[127],"visualize":[130],"scales":[132],"models;":[135],"4)":[136],"convenient":[138],"graphical":[139],"user":[140],"interface.":[141],"Existing":[142],"ABMs":[143],"diabetic":[145],"foot":[146],"ulcers":[147],"acute":[149],"inflammation":[150,182],"were":[151,159],"implemented":[152],"SPARK.":[154],"identical":[157],"complexity":[158],"run":[160],"both":[162],"NetLogo":[163],"SPARK;":[165],"SPARK-based":[167],"models":[168,183],"ran":[169],"two":[170],"to":[171,179],"three":[172],"times":[173],"faster.We":[174],"are":[175],"currently":[176],"utilizing":[177],"develop":[180],"multi-scale":[181],"diverse":[185],"settings":[186],"such":[187],"cancer,":[189],"viral":[190],"infection,":[191],"spinal":[193],"cord":[194],"injury.":[195]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":2}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2016-06-24T00:00:00"}
