{"id":"https://openalex.org/W2087847569","doi":"https://doi.org/10.1145/1854776.1854906","title":"A framework for developing epitope prediction tools","display_name":"A framework for developing epitope prediction tools","publication_year":2010,"publication_date":"2010-08-02","ids":{"openalex":"https://openalex.org/W2087847569","doi":"https://doi.org/10.1145/1854776.1854906","mag":"2087847569"},"language":"en","primary_location":{"id":"doi:10.1145/1854776.1854906","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1854776.1854906","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5079233454","display_name":"Yasser EL\u2010Manzalawy","orcid":"https://orcid.org/0000-0002-4681-7994"},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]},{"id":"https://openalex.org/I184834183","display_name":"Al-Azhar University","ror":"https://ror.org/05fnp1145","country_code":"EG","type":"education","lineage":["https://openalex.org/I184834183"]}],"countries":["EG","US"],"is_corresponding":false,"raw_author_name":"Yasser El-Manzalawy","raw_affiliation_strings":["Iowa State University, Ames, IA and Al-Azhar University, Cairo, Egypt"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Iowa State University, Ames, IA and Al-Azhar University, Cairo, Egypt","institution_ids":["https://openalex.org/I173911158","https://openalex.org/I184834183"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5004737962","display_name":"Vasant Honavar","orcid":"https://orcid.org/0000-0001-5399-3489"},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Vasant Honavar","raw_affiliation_strings":["Iowa State University, Ames, IA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Iowa State University, Ames, IA","institution_ids":["https://openalex.org/I173911158"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.18685982,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"660","last_page":"662"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10580","display_name":"Immunotherapy and Immune Responses","score":0.9901999831199646,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/server","display_name":"Server","score":0.8335034847259521},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8127402067184448},{"id":"https://openalex.org/keywords/epitope","display_name":"Epitope","score":0.6219894886016846},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.607380747795105},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.5623013973236084},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.5250566005706787},{"id":"https://openalex.org/keywords/major-histocompatibility-complex","display_name":"Major histocompatibility complex","score":0.5182754397392273},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.49266940355300903},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.45036008954048157},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.4433669447898865},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.2925183176994324},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.21156394481658936},{"id":"https://openalex.org/keywords/antigen","display_name":"Antigen","score":0.12836819887161255},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.12698069214820862}],"concepts":[{"id":"https://openalex.org/C93996380","wikidata":"https://www.wikidata.org/wiki/Q44127","display_name":"Server","level":2,"score":0.8335034847259521},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8127402067184448},{"id":"https://openalex.org/C195616568","wikidata":"https://www.wikidata.org/wiki/Q128711","display_name":"Epitope","level":3,"score":0.6219894886016846},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.607380747795105},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.5623013973236084},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.5250566005706787},{"id":"https://openalex.org/C207936829","wikidata":"https://www.wikidata.org/wiki/Q423163","display_name":"Major histocompatibility complex","level":3,"score":0.5182754397392273},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.49266940355300903},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.45036008954048157},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.4433669447898865},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.2925183176994324},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.21156394481658936},{"id":"https://openalex.org/C147483822","wikidata":"https://www.wikidata.org/wiki/Q103537","display_name":"Antigen","level":2,"score":0.12836819887161255},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.12698069214820862},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/1854776.1854906","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1854776.1854906","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17","score":0.4399999976158142},{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.4399999976158142}],"awards":[{"id":"https://openalex.org/G2296982746","display_name":"Discovery of Protein Seq.Struct.Func.Relationships","funder_award_id":"5r33gm066387-04","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":14,"referenced_works":["https://openalex.org/W1570448133","https://openalex.org/W1968361401","https://openalex.org/W1993568862","https://openalex.org/W2004216886","https://openalex.org/W2035014358","https://openalex.org/W2055132429","https://openalex.org/W2087202599","https://openalex.org/W2088377308","https://openalex.org/W2095104107","https://openalex.org/W2142856684","https://openalex.org/W2156628505","https://openalex.org/W2168749806","https://openalex.org/W2966207845","https://openalex.org/W4320800886"],"related_works":["https://openalex.org/W2626999804","https://openalex.org/W4250004941","https://openalex.org/W2736202444","https://openalex.org/W2049015391","https://openalex.org/W2137014442","https://openalex.org/W1533158771","https://openalex.org/W122082928","https://openalex.org/W2104288289","https://openalex.org/W2521397622","https://openalex.org/W4294067941"],"abstract_inverted_index":{"Several":[0],"computational":[1],"methods":[2,19],"for":[3,127],"identifying":[4],"epitopes":[5],"in":[6,12,110],"antigenic":[7],"sequences":[8],"have":[9,20],"been":[10,21],"proposed":[11],"the":[13,25,32,68,77,92,101,105],"last":[14],"decade.":[15],"Many":[16],"of":[17,34,70,94,103,107],"these":[18,35,63,118],"made":[22],"accessible":[23],"via":[24],"Internet":[26],"as":[27],"online":[28],"web":[29],"servers.":[30],"However,":[31],"majority":[33],"servers":[36,64,75,109],"are":[37,139],"not":[38],"periodically":[39],"updated":[40],"to":[41,48,79,112],"accumulate":[42],"newly":[43],"reported":[44],"experimental":[45],"data":[46,73],"or":[47],"support":[49],"additional":[50],"major":[51],"histocompatibility":[52],"complex":[53],"(MHC)":[54],"allele-specic":[55],"predictors.":[56],"Furthermore,":[57],"performing":[58],"large":[59],"scale":[60],"studies":[61],"using":[62],"is":[65,88],"limited":[66,90],"by":[67,91],"amount":[69],"accepted":[71],"query":[72],"(some":[74],"restrict":[76],"user":[78],"submit":[80],"one":[81],"protein":[82],"sequence":[83],"at":[84,141],"a":[85,95,125],"time)":[86],"and":[87,135],"also":[89],"lack":[93],"unified":[96],"output":[97],"format":[98],"which":[99],"complicates":[100],"process":[102],"combining":[104],"results":[106],"several":[108],"order":[111],"obtain":[113],"consensus":[114],"predictions.":[115],"To":[116],"address":[117],"issues,":[119],"we":[120],"propose":[121],"Epitopes":[122],"Toolkit":[123],"(EpiT),":[124],"platform":[126],"developing":[128],"epitope":[129],"prediction":[130],"tools.":[131],"The":[132],"software,":[133],"documentation":[134],"other":[136],"supporting":[137],"materials":[138],"available":[140],"http://ailab.cs.iastate.edu/epit/.":[142]},"counts_by_year":[{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2014,"cited_by_count":2}],"updated_date":"2026-08-06T08:24:18.245995","created_date":"2025-10-10T00:00:00"}
