{"id":"https://openalex.org/W2054091276","doi":"https://doi.org/10.1145/1854776.1854895","title":"A novel representation of HLA allele specificity and prediction algorithm for HLA class I binding","display_name":"A novel representation of HLA allele specificity and prediction algorithm for HLA class I binding","publication_year":2010,"publication_date":"2010-08-02","ids":{"openalex":"https://openalex.org/W2054091276","doi":"https://doi.org/10.1145/1854776.1854895","mag":"2054091276"},"language":"en","primary_location":{"id":"doi:10.1145/1854776.1854895","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1854776.1854895","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5056007865","display_name":"David K. Crockett","orcid":"https://orcid.org/0000-0002-2425-7711"},"institutions":[{"id":"https://openalex.org/I223532165","display_name":"University of Utah","ror":"https://ror.org/03r0ha626","country_code":"US","type":"education","lineage":["https://openalex.org/I223532165"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David K. Crockett","raw_affiliation_strings":["University of Utah, UT","University of Utah (UT)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Utah, UT","institution_ids":["https://openalex.org/I223532165"]},{"raw_affiliation_string":"University of Utah (UT)","institution_ids":["https://openalex.org/I223532165"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5046268336","display_name":"Perry G. Ridge","orcid":"https://orcid.org/0000-0001-6944-2753"},"institutions":[{"id":"https://openalex.org/I223532165","display_name":"University of Utah","ror":"https://ror.org/03r0ha626","country_code":"US","type":"education","lineage":["https://openalex.org/I223532165"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Perry G. Ridge","raw_affiliation_strings":["University of Utah, UT","University of Utah (UT)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Utah, UT","institution_ids":["https://openalex.org/I223532165"]},{"raw_affiliation_string":"University of Utah (UT)","institution_ids":["https://openalex.org/I223532165"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I223532165"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.15408298,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"199","issue":null,"first_page":"642","last_page":"643"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13326","display_name":"Biochemical and Structural Characterization","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/peptide","display_name":"Peptide","score":0.6835120916366577},{"id":"https://openalex.org/keywords/human-leukocyte-antigen","display_name":"Human leukocyte antigen","score":0.6299526691436768},{"id":"https://openalex.org/keywords/amino-acid","display_name":"Amino acid","score":0.48079386353492737},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.46717578172683716},{"id":"https://openalex.org/keywords/amino-acid-residue","display_name":"Amino acid residue","score":0.4617685377597809},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4460860788822174},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.44395706057548523},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.4172629117965698},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.40223321318626404},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.3906649351119995},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.31426507234573364},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.23305627703666687},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.18782967329025269},{"id":"https://openalex.org/keywords/antigen","display_name":"Antigen","score":0.1750451624393463},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.12034294009208679}],"concepts":[{"id":"https://openalex.org/C2779281246","wikidata":"https://www.wikidata.org/wiki/Q172847","display_name":"Peptide","level":2,"score":0.6835120916366577},{"id":"https://openalex.org/C188280979","wikidata":"https://www.wikidata.org/wiki/Q911125","display_name":"Human leukocyte antigen","level":3,"score":0.6299526691436768},{"id":"https://openalex.org/C515207424","wikidata":"https://www.wikidata.org/wiki/Q8066","display_name":"Amino acid","level":2,"score":0.48079386353492737},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.46717578172683716},{"id":"https://openalex.org/C2994376932","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Amino acid residue","level":4,"score":0.4617685377597809},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4460860788822174},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.44395706057548523},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.4172629117965698},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.40223321318626404},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.3906649351119995},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.31426507234573364},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.23305627703666687},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.18782967329025269},{"id":"https://openalex.org/C147483822","wikidata":"https://www.wikidata.org/wiki/Q103537","display_name":"Antigen","level":2,"score":0.1750451624393463},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.12034294009208679},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/1854776.1854895","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1854776.1854895","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":11,"referenced_works":["https://openalex.org/W1556179997","https://openalex.org/W1560107318","https://openalex.org/W1570448133","https://openalex.org/W2068945309","https://openalex.org/W2079542677","https://openalex.org/W2137959503","https://openalex.org/W2144185370","https://openalex.org/W2156827437","https://openalex.org/W2966207845","https://openalex.org/W4213345021","https://openalex.org/W6634094483"],"related_works":["https://openalex.org/W2393806059","https://openalex.org/W2143537935","https://openalex.org/W1589975312","https://openalex.org/W3210150956","https://openalex.org/W2582797103","https://openalex.org/W2046677260","https://openalex.org/W1999832194","https://openalex.org/W1994459954","https://openalex.org/W1837011314","https://openalex.org/W2073366206"],"abstract_inverted_index":{"Current":[0],"software":[1],"tools":[2],"and":[3,72],"algorithms":[4],"for":[5,34],"prediction":[6,13],"of":[7,19,25,59,66],"HLA":[8],"class":[9],"I":[10],"peptide":[11,36,68],"binding":[12],"are":[14],"based":[15,51],"on":[16,52],"the":[17],"frequency":[18],"2":[20],"anchoring":[21],"residues":[22,29,41,71,74],"from":[23],"peptides":[24,61],"8":[26],"to":[27,43],"9":[28],"long":[30],"with":[31],"less":[32],"account":[33],"variable":[35],"length":[37],"or":[38],"amino":[39,63],"acid":[40,64],"internal":[42,73],"anchor":[44,69,76],"positions.":[45,77],"We":[46],"herein":[47],"propose":[48],"an":[49],"algorithm":[50],"data":[53],"obtained":[54],"by":[55],"mass":[56],"spectrometric":[57],"sequencing":[58],"eluted":[60],"using":[62],"properties":[65],"key":[67],"position":[70],"between":[75]},"counts_by_year":[],"updated_date":"2026-07-30T17:31:21.811387","created_date":"2025-10-10T00:00:00"}
