{"id":"https://openalex.org/W2026767008","doi":"https://doi.org/10.1145/1854776.1854889","title":"B-cell epitope prediction for peptide-based vaccine design","display_name":"B-cell epitope prediction for peptide-based vaccine design","publication_year":2010,"publication_date":"2010-08-02","ids":{"openalex":"https://openalex.org/W2026767008","doi":"https://doi.org/10.1145/1854776.1854889","mag":"2026767008"},"language":"en","primary_location":{"id":"doi:10.1145/1854776.1854889","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1854776.1854889","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5040586900","display_name":"Salvador Eugenio C. Caoili","orcid":"https://orcid.org/0000-0002-3210-3763"},"institutions":[{"id":"https://openalex.org/I5791819","display_name":"University of the Philippines Manila","ror":"https://ror.org/01rrczv41","country_code":"PH","type":"education","lineage":["https://openalex.org/I103911934","https://openalex.org/I5791819"]}],"countries":["PH"],"is_corresponding":true,"raw_author_name":"Salvador Eugenio C. Caoili","raw_affiliation_strings":["University of the Philippines Manila, Ermita, Manila, Philippines","University of the Philippines-Manila, Ermita, Manila, Philippines"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of the Philippines Manila, Ermita, Manila, Philippines","institution_ids":["https://openalex.org/I5791819"]},{"raw_affiliation_string":"University of the Philippines-Manila, Ermita, Manila, Philippines","institution_ids":["https://openalex.org/I5791819"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5040586900"],"corresponding_institution_ids":["https://openalex.org/I5791819"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.1284041,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":95},"biblio":{"volume":null,"issue":null,"first_page":"602","last_page":"610"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10580","display_name":"Immunotherapy and Immune Responses","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/epitope","display_name":"Epitope","score":0.8537989854812622},{"id":"https://openalex.org/keywords/immunodominance","display_name":"Immunodominance","score":0.5474671125411987},{"id":"https://openalex.org/keywords/obstacle","display_name":"Obstacle","score":0.5464864373207092},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5106256604194641},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5018672943115234},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.43388283252716064},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.42154160141944885},{"id":"https://openalex.org/keywords/antigen","display_name":"Antigen","score":0.41187024116516113}],"concepts":[{"id":"https://openalex.org/C195616568","wikidata":"https://www.wikidata.org/wiki/Q128711","display_name":"Epitope","level":3,"score":0.8537989854812622},{"id":"https://openalex.org/C2776525413","wikidata":"https://www.wikidata.org/wiki/Q17149888","display_name":"Immunodominance","level":4,"score":0.5474671125411987},{"id":"https://openalex.org/C2776650193","wikidata":"https://www.wikidata.org/wiki/Q264661","display_name":"Obstacle","level":2,"score":0.5464864373207092},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5106256604194641},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5018672943115234},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.43388283252716064},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.42154160141944885},{"id":"https://openalex.org/C147483822","wikidata":"https://www.wikidata.org/wiki/Q103537","display_name":"Antigen","level":2,"score":0.41187024116516113},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/1854776.1854889","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1854776.1854889","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.7200000286102295}],"awards":[],"funders":[{"id":"https://openalex.org/F4320324072","display_name":"Commission on Higher Education","ror":"https://ror.org/04s346m05"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":84,"referenced_works":["https://openalex.org/W8605269","https://openalex.org/W86407692","https://openalex.org/W100151285","https://openalex.org/W1485088544","https://openalex.org/W1494201110","https://openalex.org/W1536128836","https://openalex.org/W1543448539","https://openalex.org/W1568829416","https://openalex.org/W1573417178","https://openalex.org/W1591722088","https://openalex.org/W1672912607","https://openalex.org/W1948397274","https://openalex.org/W1968361401","https://openalex.org/W1976026906","https://openalex.org/W1979239673","https://openalex.org/W1980079034","https://openalex.org/W1983113740","https://openalex.org/W1990748933","https://openalex.org/W1993035689","https://openalex.org/W2002050149","https://openalex.org/W2012941672","https://openalex.org/W2016029316","https://openalex.org/W2026399924","https://openalex.org/W2027662505","https://openalex.org/W2028147409","https://openalex.org/W2031154790","https://openalex.org/W2031175900","https://openalex.org/W2031864275","https://openalex.org/W2032015628","https://openalex.org/W2033664155","https://openalex.org/W2034694458","https://openalex.org/W2035014358","https://openalex.org/W2042492527","https://openalex.org/W2042636349","https://openalex.org/W2042777169","https://openalex.org/W2046501494","https://openalex.org/W2046533524","https://openalex.org/W2047994201","https://openalex.org/W2053418558","https://openalex.org/W2056538898","https://openalex.org/W2057559278","https://openalex.org/W2059178238","https://openalex.org/W2060809008","https://openalex.org/W2067237014","https://openalex.org/W2068074750","https://openalex.org/W2081955017","https://openalex.org/W2085381051","https://openalex.org/W2087230890","https://openalex.org/W2088593561","https://openalex.org/W2093670166","https://openalex.org/W2096445115","https://openalex.org/W2106150646","https://openalex.org/W2106223215","https://openalex.org/W2112129368","https://openalex.org/W2117604923","https://openalex.org/W2121923468","https://openalex.org/W2123184152","https://openalex.org/W2131805882","https://openalex.org/W2132116179","https://openalex.org/W2137575262","https://openalex.org/W2139425275","https://openalex.org/W2140468230","https://openalex.org/W2141111918","https://openalex.org/W2141427594","https://openalex.org/W2144902263","https://openalex.org/W2145736817","https://openalex.org/W2149984099","https://openalex.org/W2150244847","https://openalex.org/W2155015540","https://openalex.org/W2158500407","https://openalex.org/W2160397907","https://openalex.org/W2168518560","https://openalex.org/W2169260654","https://openalex.org/W2196778533","https://openalex.org/W2411287810","https://openalex.org/W2411386862","https://openalex.org/W2415387743","https://openalex.org/W2415887006","https://openalex.org/W2418300783","https://openalex.org/W2467366786","https://openalex.org/W2750567047","https://openalex.org/W3191676131","https://openalex.org/W4239059109","https://openalex.org/W4323053287"],"related_works":["https://openalex.org/W2972398329","https://openalex.org/W1988201115","https://openalex.org/W1994413971","https://openalex.org/W2091198876","https://openalex.org/W60393510","https://openalex.org/W1522666610","https://openalex.org/W2057384526","https://openalex.org/W2089037545","https://openalex.org/W2157417133","https://openalex.org/W2102878140"],"abstract_inverted_index":{"Two":[0],"major":[1],"obstacles":[2],"to":[3,33,43,93,104,148],"the":[4,16,23,57,95,140,143,161,199,231],"development":[5],"of":[6,26,38,46,63,68,78,110,156,163,174,191,198,217,233],"B-cell":[7,182,206],"epitope":[8,183],"prediction":[9,73],"for":[10,134,181,226,237],"peptide-based":[11],"vaccine":[12,227],"design":[13,228],"are":[14,41,102,155],"(1)":[15],"prevailing":[17],"binary":[18],"classification":[19],"paradigm,":[20],"which":[21,236],"mandates":[22],"problematic":[24],"dichotomization":[25],"continuous":[27,81],"outcome":[28],"variables,":[29],"and":[30,48,170,220],"(2)":[31],"failure":[32],"explicitly":[34],"model":[35],"biological":[36,66,121,136,152],"consequences":[37],"immunization":[39],"that":[40,72,154,213],"relevant":[42,108],"practical":[44,158],"considerations":[45],"safety":[47],"efficacy.":[49],"The":[50],"first":[51],"obstacle":[52,97],"is":[53,74,128,145,208,224,240],"eliminated":[54],"by":[55,90,118,242],"redefining":[56],"predictive":[58],"task":[59],"as":[60,131],"quantitative":[61],"estimation":[62],"empirically":[64],"observable":[65],"effects":[67],"antibody-antigen":[69,126],"binding,":[70],"such":[71],"benchmarked":[75],"using":[76],"measures":[77],"correlation":[79],"between":[80],"rather":[82],"than":[83,176],"dichotomous":[84],"variables;":[85],"but":[86,222],"this":[87],"alternative":[88],"approach":[89],"itself":[91],"fails":[92],"address":[94],"second":[96,141],"even":[98],"if":[99],"benchmark":[100],"data":[101],"selected":[103],"exclusively":[105],"reflect":[106],"functionally":[107],"cross-reactivity":[109],"antipeptide":[111],"antibodies":[112],"with":[113],"protein":[114,120],"antigens":[115],"(as":[116],"evidenced":[117],"antibody-modulated":[119],"activity),":[122],"particularly":[123],"where":[124],"only":[125,229],"binding":[127],"actually":[129],"predicted":[130],"a":[132,150,167,186,209],"surrogate":[133],"its":[135],"effects.":[137],"To":[138],"overcome":[139],"obstacle,":[142],"prerequisite":[144],"deliberate":[146],"effort":[147],"predict,":[149],"priori,":[151],"outcomes":[153],"immediate":[157],"significance":[159],"from":[160],"perspective":[162],"vaccination.":[164],"This":[165],"demands":[166],"much":[168],"broader":[169],"deeper":[171],"systems":[172],"view":[173,187],"immunobiology":[175],"has":[177],"hitherto":[178],"been":[179],"invoked":[180],"prediction.":[184],"Such":[185],"would":[188],"facilitate":[189],"comprehension":[190],"many":[192],"crucial":[193],"yet":[194],"largely":[195],"neglected":[196],"aspects":[197],"vaccine-design":[200],"problem.":[201],"Of":[202],"these,":[203],"immunodominance":[204],"among":[205],"epitopes":[207],"central":[210],"unifying":[211],"theme":[212],"subsumes":[214],"immune":[215],"phenomena":[216],"tolerance,":[218],"imprinting":[219],"refocusing;":[221],"it":[223],"meaningful":[225],"in":[230],"light":[232],"disease-specific":[234],"pathophysiology,":[235],"infectious":[238],"processes":[239],"complicated":[241],"host-pathogen":[243],"coevolution.":[244]},"counts_by_year":[{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2016,"cited_by_count":1}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
