{"id":"https://openalex.org/W1989993810","doi":"https://doi.org/10.1145/1854776.1854873","title":"Dysfunctional gene/protein networks in hepatitis C virus-induced hepatocellular cirrhosis and carcinoma","display_name":"Dysfunctional gene/protein networks in hepatitis C virus-induced hepatocellular cirrhosis and carcinoma","publication_year":2010,"publication_date":"2010-08-02","ids":{"openalex":"https://openalex.org/W1989993810","doi":"https://doi.org/10.1145/1854776.1854873","mag":"1989993810"},"language":"en","primary_location":{"id":"doi:10.1145/1854776.1854873","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1854776.1854873","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5025077602","display_name":"Tao Huang","orcid":"https://orcid.org/0000-0003-1975-9693"},"institutions":[{"id":"https://openalex.org/I4210162648","display_name":"Shanghai Center For Bioinformation Technology","ror":"https://ror.org/04nyf1f54","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210162648"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tao Huang","raw_affiliation_strings":["Shanghai Center for Bioinformation Technology, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Shanghai Center for Bioinformation Technology, Shanghai, China","institution_ids":["https://openalex.org/I4210162648"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076249394","display_name":"Guohui Ding","orcid":"https://orcid.org/0000-0002-2888-1335"},"institutions":[{"id":"https://openalex.org/I4210162648","display_name":"Shanghai Center For Bioinformation Technology","ror":"https://ror.org/04nyf1f54","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210162648"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guohui Ding","raw_affiliation_strings":["Shanghai Center for Bioinformation Technology, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Shanghai Center for Bioinformation Technology, Shanghai, China","institution_ids":["https://openalex.org/I4210162648"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008280608","display_name":"Yixue Li","orcid":"https://orcid.org/0000-0002-1198-7176"},"institutions":[{"id":"https://openalex.org/I4210162648","display_name":"Shanghai Center For Bioinformation Technology","ror":"https://ror.org/04nyf1f54","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210162648"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yixue Li","raw_affiliation_strings":["Shanghai Center for Bioinformation Technology, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Shanghai Center for Bioinformation Technology, Shanghai, China","institution_ids":["https://openalex.org/I4210162648"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100349593","display_name":"Lei Liu","orcid":"https://orcid.org/0000-0002-8717-7364"},"institutions":[{"id":"https://openalex.org/I4210162648","display_name":"Shanghai Center For Bioinformation Technology","ror":"https://ror.org/04nyf1f54","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210162648"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lei Liu","raw_affiliation_strings":["Shanghai Center for Bioinformation Technology, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Shanghai Center for Bioinformation Technology, Shanghai, China","institution_ids":["https://openalex.org/I4210162648"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101882884","display_name":"Eugene Tan","orcid":"https://orcid.org/0009-0001-1742-2387"},"institutions":[{"id":"https://openalex.org/I1285764155","display_name":"Merck & Co., Inc., Rahway, NJ, USA (United States)","ror":"https://ror.org/02891sr49","country_code":"US","type":"company","lineage":["https://openalex.org/I1285764155"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eugene Tan","raw_affiliation_strings":["Merck Research Laboratories, Seattle, WA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Merck Research Laboratories, Seattle, WA","institution_ids":["https://openalex.org/I1285764155"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101790056","display_name":"Hongyue Dai","orcid":"https://orcid.org/0000-0002-6609-9141"},"institutions":[{"id":"https://openalex.org/I1285764155","display_name":"Merck & Co., Inc., Rahway, NJ, USA (United States)","ror":"https://ror.org/02891sr49","country_code":"US","type":"company","lineage":["https://openalex.org/I1285764155"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hongyue Dai","raw_affiliation_strings":["Merck Research Laboratories, Seattle, WA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Merck Research Laboratories, Seattle, WA","institution_ids":["https://openalex.org/I1285764155"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100453224","display_name":"Qi Liu","orcid":"https://orcid.org/0000-0002-7892-5965"},"institutions":[{"id":"https://openalex.org/I4210162648","display_name":"Shanghai Center For Bioinformation Technology","ror":"https://ror.org/04nyf1f54","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210162648"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qi Liu","raw_affiliation_strings":["Shanghai Center for Bioinformation Technology, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Shanghai Center for Bioinformation Technology, Shanghai, China","institution_ids":["https://openalex.org/I4210162648"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000803372","display_name":"Zhidong Tu","orcid":"https://orcid.org/0000-0001-7721-1410"},"institutions":[{"id":"https://openalex.org/I1285764155","display_name":"Merck & Co., Inc., Rahway, NJ, USA (United States)","ror":"https://ror.org/02891sr49","country_code":"US","type":"company","lineage":["https://openalex.org/I1285764155"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zhidong Tu","raw_affiliation_strings":["Merck Research Laboratories, Seattle, WA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Merck Research Laboratories, Seattle, WA","institution_ids":["https://openalex.org/I1285764155"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5033203853","display_name":"Lu Xie","orcid":"https://orcid.org/0000-0001-7541-2243"},"institutions":[{"id":"https://openalex.org/I4210162648","display_name":"Shanghai Center For Bioinformation Technology","ror":"https://ror.org/04nyf1f54","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210162648"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lu Xie","raw_affiliation_strings":["Shanghai Center for Bioinformation Technology, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Shanghai Center for Bioinformation Technology, Shanghai, China","institution_ids":["https://openalex.org/I4210162648"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"502","last_page":"507"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13779","display_name":"Cancer Mechanisms and Therapy","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/2734","display_name":"Pathology and Forensic Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T13779","display_name":"Cancer Mechanisms and Therapy","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/2734","display_name":"Pathology and Forensic Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11297","display_name":"Ferroptosis and cancer prognosis","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9945999979972839,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/hepatocellular-carcinoma","display_name":"Hepatocellular carcinoma","score":0.86882483959198},{"id":"https://openalex.org/keywords/cirrhosis","display_name":"Cirrhosis","score":0.8357721567153931},{"id":"https://openalex.org/keywords/carcinogenesis","display_name":"Carcinogenesis","score":0.6987413167953491},{"id":"https://openalex.org/keywords/dysfunctional-family","display_name":"Dysfunctional family","score":0.635826826095581},{"id":"https://openalex.org/keywords/hepatitis-c-virus","display_name":"Hepatitis C virus","score":0.5909396409988403},{"id":"https://openalex.org/keywords/cancer-research","display_name":"Cancer research","score":0.5116272568702698},{"id":"https://openalex.org/keywords/hepatitis-c","display_name":"Hepatitis C","score":0.4760073125362396},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.4728676974773407},{"id":"https://openalex.org/keywords/liver-cancer","display_name":"Liver cancer","score":0.41912779211997986},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.3944269120693207},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.3837231695652008},{"id":"https://openalex.org/keywords/virus","display_name":"Virus","score":0.26495808362960815},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.22479146718978882},{"id":"https://openalex.org/keywords/clinical-psychology","display_name":"Clinical psychology","score":0.056291282176971436}],"concepts":[{"id":"https://openalex.org/C2778019345","wikidata":"https://www.wikidata.org/wiki/Q1148337","display_name":"Hepatocellular carcinoma","level":2,"score":0.86882483959198},{"id":"https://openalex.org/C2777214474","wikidata":"https://www.wikidata.org/wiki/Q147778","display_name":"Cirrhosis","level":2,"score":0.8357721567153931},{"id":"https://openalex.org/C555283112","wikidata":"https://www.wikidata.org/wiki/Q1637543","display_name":"Carcinogenesis","level":3,"score":0.6987413167953491},{"id":"https://openalex.org/C27502469","wikidata":"https://www.wikidata.org/wiki/Q906343","display_name":"Dysfunctional family","level":2,"score":0.635826826095581},{"id":"https://openalex.org/C2776408679","wikidata":"https://www.wikidata.org/wiki/Q708693","display_name":"Hepatitis C virus","level":3,"score":0.5909396409988403},{"id":"https://openalex.org/C502942594","wikidata":"https://www.wikidata.org/wiki/Q3421914","display_name":"Cancer research","level":1,"score":0.5116272568702698},{"id":"https://openalex.org/C2776455275","wikidata":"https://www.wikidata.org/wiki/Q154869","display_name":"Hepatitis C","level":2,"score":0.4760073125362396},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.4728676974773407},{"id":"https://openalex.org/C2776231280","wikidata":"https://www.wikidata.org/wiki/Q623031","display_name":"Liver cancer","level":3,"score":0.41912779211997986},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.3944269120693207},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.3837231695652008},{"id":"https://openalex.org/C2522874641","wikidata":"https://www.wikidata.org/wiki/Q808","display_name":"Virus","level":2,"score":0.26495808362960815},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.22479146718978882},{"id":"https://openalex.org/C70410870","wikidata":"https://www.wikidata.org/wiki/Q199906","display_name":"Clinical psychology","level":1,"score":0.056291282176971436}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/1854776.1854873","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1854776.1854873","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.8399999737739563,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320309151","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":31,"referenced_works":["https://openalex.org/W178461477","https://openalex.org/W209639396","https://openalex.org/W853209886","https://openalex.org/W1970430388","https://openalex.org/W1979574442","https://openalex.org/W1991600824","https://openalex.org/W2004611770","https://openalex.org/W2006331688","https://openalex.org/W2009671859","https://openalex.org/W2015705446","https://openalex.org/W2021365609","https://openalex.org/W2022293355","https://openalex.org/W2025183726","https://openalex.org/W2040827479","https://openalex.org/W2053978445","https://openalex.org/W2090476586","https://openalex.org/W2090822981","https://openalex.org/W2107055030","https://openalex.org/W2111285782","https://openalex.org/W2113613985","https://openalex.org/W2115610036","https://openalex.org/W2116298046","https://openalex.org/W2122535719","https://openalex.org/W2123511080","https://openalex.org/W2138155367","https://openalex.org/W2142015380","https://openalex.org/W2152930674","https://openalex.org/W2156711378","https://openalex.org/W2164112645","https://openalex.org/W2321119966","https://openalex.org/W2334978547"],"related_works":["https://openalex.org/W2380114548","https://openalex.org/W2372936364","https://openalex.org/W3031265184","https://openalex.org/W2387889855","https://openalex.org/W2365174229","https://openalex.org/W2416355439","https://openalex.org/W2117027295","https://openalex.org/W2116839874","https://openalex.org/W2762048449","https://openalex.org/W2052290779"],"abstract_inverted_index":{"Background:":[0],"Although":[1],"hepatitis":[2],"C":[3],"virus":[4],"(HCV)":[5],"infection":[6,152],"is":[7,26],"an":[8],"important":[9],"risk":[10],"factor":[11,173],"for":[12],"hepatocellular":[13,49],"carcinoma":[14],"(HCC),":[15],"the":[16,40,54,86,119,142,166,185,189,201],"molecular":[17],"mechanisms":[18],"of":[19,43,48,58,90,98,107,122,128,200,203],"HCV-induced":[20,36,204],"transformation":[21,206],"remain":[22],"largely":[23],"unknown.":[24],"Cirrhosis":[25],"a":[27],"transition":[28],"state":[29],"from":[30],"normal":[31],"liver":[32,66],"to":[33,70,103,115,139,188,210],"tumorigenesis":[34],"in":[35,75,118,126,141],"HCC;":[37],"thus,":[38],"studying":[39],"carcinogenic":[41],"effects":[42],"cirrhosis":[44,76,143,211],"could":[45],"improve":[46],"understanding":[47,199],"tumorigenesis.Results:":[50],"In":[51],"this":[52],"study,":[53],"gene":[55],"expression":[56,92],"profiles":[57],"19":[59],"normal,":[60],"58":[61],"cirrhotic,":[62],"and":[63,77,93,150,160,178,183,192,207,212],"47":[64],"HCC":[65,129,213],"tissues":[67],"were":[68,113],"used":[69,102],"identify":[71,104],"dysfunctional":[72,99,105,120,148],"gene/protein":[73],"networks":[74,149],"HCC.":[78],"Dysfunctional":[79],"interaction":[80],"score":[81],"was":[82,101,154],"calculated":[83],"by":[84],"integrating":[85],"statistical":[87],"p":[88],"values":[89],"differential":[91],"correlated":[94],"expression.":[95],"The":[96,145],"distribution":[97],"scores":[100],"elements":[106],"each":[108],"network.":[109],"More":[110],"cancer":[111,136],"genes":[112,137],"found":[114],"be":[116],"enriched":[117],"interactions":[121],"cirrhotic":[123],"livers":[124],"than":[125],"those":[127],"livers.":[130],"This":[131],"may":[132,197],"suggest":[133],"that":[134,165,179],"many":[135],"begin":[138],"change":[140],"stage.":[144],"relationship":[146],"between":[147],"HCV":[151,167],"also":[153],"analyzed.":[155],"Based":[156],"on":[157],"our":[158],"results":[159,196],"earlier":[161],"research,":[162],"we":[163],"hypothesize":[164],"protein":[168],"CORE":[169,186],"regulates":[170],"human":[171],"nuclear":[172],"Yin":[174],"Yang":[175],"1":[176],"(YY1)":[177],"YY1":[180],"subsequently":[181],"amplifies":[182],"transmits":[184],"signal":[187],"insulin,":[190],"Jak/STAT,":[191],"TGFs":[193],"pathways.Conclusions:":[194],"Our":[195],"help":[198],"mechanism":[202],"malignant":[205],"providing":[208],"clues":[209],"therapy":[214],"or":[215],"prevention.":[216]},"counts_by_year":[{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":2}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
