{"id":"https://openalex.org/W2023180634","doi":"https://doi.org/10.1145/1854776.1854859","title":"Performance evaluation of the time-delayed dynamic Bayesian network approach to inferring gene regulatory networks from time series microarray data","display_name":"Performance evaluation of the time-delayed dynamic Bayesian network approach to inferring gene regulatory networks from time series microarray data","publication_year":2010,"publication_date":"2010-08-02","ids":{"openalex":"https://openalex.org/W2023180634","doi":"https://doi.org/10.1145/1854776.1854859","mag":"2023180634"},"language":"en","primary_location":{"id":"doi:10.1145/1854776.1854859","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1854776.1854859","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5002897500","display_name":"Haoni Li","orcid":null},"institutions":[{"id":"https://openalex.org/I44854399","display_name":"University of Southern Mississippi","ror":"https://ror.org/0270vfa57","country_code":"US","type":"education","lineage":["https://openalex.org/I4210141039","https://openalex.org/I44854399"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Haoni Li","raw_affiliation_strings":["The University of Southern Mississippi, Hattiesburg, MS","the University of Southern Mississippi, Hattiesburg, MS"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The University of Southern Mississippi, Hattiesburg, MS","institution_ids":["https://openalex.org/I44854399"]},{"raw_affiliation_string":"the University of Southern Mississippi, Hattiesburg, MS","institution_ids":["https://openalex.org/I44854399"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100432772","display_name":"Peng Li","orcid":"https://orcid.org/0000-0003-2030-1807"},"institutions":[{"id":"https://openalex.org/I44854399","display_name":"University of Southern Mississippi","ror":"https://ror.org/0270vfa57","country_code":"US","type":"education","lineage":["https://openalex.org/I4210141039","https://openalex.org/I44854399"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Peng Li","raw_affiliation_strings":["The University of Southern Mississippi, Hattiesburg, MS","the University of Southern Mississippi, Hattiesburg, MS"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The University of Southern Mississippi, Hattiesburg, MS","institution_ids":["https://openalex.org/I44854399"]},{"raw_affiliation_string":"the University of Southern Mississippi, Hattiesburg, MS","institution_ids":["https://openalex.org/I44854399"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100603445","display_name":"Chaoyang Zhang","orcid":"https://orcid.org/0000-0002-1221-0406"},"institutions":[{"id":"https://openalex.org/I44854399","display_name":"University of Southern Mississippi","ror":"https://ror.org/0270vfa57","country_code":"US","type":"education","lineage":["https://openalex.org/I4210141039","https://openalex.org/I44854399"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chaoyang Zhang","raw_affiliation_strings":["The University of Southern Mississippi, Hattiesburg, MS","the University of Southern Mississippi, Hattiesburg, MS"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The University of Southern Mississippi, Hattiesburg, MS","institution_ids":["https://openalex.org/I44854399"]},{"raw_affiliation_string":"the University of Southern Mississippi, Hattiesburg, MS","institution_ids":["https://openalex.org/I44854399"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100332786","display_name":"Nan Wang","orcid":"https://orcid.org/0000-0003-1743-3585"},"institutions":[{"id":"https://openalex.org/I44854399","display_name":"University of Southern Mississippi","ror":"https://ror.org/0270vfa57","country_code":"US","type":"education","lineage":["https://openalex.org/I4210141039","https://openalex.org/I44854399"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nan Wang","raw_affiliation_strings":["The University of Southern Mississippi, Hattiesburg, MS","the University of Southern Mississippi, Hattiesburg, MS"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The University of Southern Mississippi, Hattiesburg, MS","institution_ids":["https://openalex.org/I44854399"]},{"raw_affiliation_string":"the University of Southern Mississippi, Hattiesburg, MS","institution_ids":["https://openalex.org/I44854399"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019029265","display_name":"Ping Gong","orcid":"https://orcid.org/0000-0001-9910-7948"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ping Gong","raw_affiliation_strings":["SpecPro Inc., Vicksburg, MS"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"SpecPro Inc., Vicksburg, MS","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5075371599","display_name":"Edward J. Perkins","orcid":"https://orcid.org/0000-0003-1693-7714"},"institutions":[{"id":"https://openalex.org/I4210088792","display_name":"United States Army","ror":"https://ror.org/00afsp483","country_code":"US","type":"government","lineage":["https://openalex.org/I1304082316","https://openalex.org/I1330347796","https://openalex.org/I4210088792"]},{"id":"https://openalex.org/I87303767","display_name":"U.S. Army Engineer Research and Development Center","ror":"https://ror.org/027mhn368","country_code":"US","type":"facility","lineage":["https://openalex.org/I1304082316","https://openalex.org/I1306490931","https://openalex.org/I1330347796","https://openalex.org/I87303767"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Edward Perkins","raw_affiliation_strings":["U.S. Army Engineer Research and Development Center, Vicksburg, MS"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"U.S. Army Engineer Research and Development Center, Vicksburg, MS","institution_ids":["https://openalex.org/I4210088792","https://openalex.org/I87303767"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"466","last_page":"468"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dynamic-bayesian-network","display_name":"Dynamic Bayesian network","score":0.8412383198738098},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.683702290058136},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6733570098876953},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.6361743211746216},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.551234245300293},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.546827495098114},{"id":"https://openalex.org/keywords/time-series","display_name":"Time series","score":0.540375828742981},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.486258864402771},{"id":"https://openalex.org/keywords/microarray-analysis-techniques","display_name":"Microarray analysis techniques","score":0.4705890715122223},{"id":"https://openalex.org/keywords/bayesian-network","display_name":"Bayesian network","score":0.45877087116241455},{"id":"https://openalex.org/keywords/saccharomyces-cerevisiae","display_name":"Saccharomyces cerevisiae","score":0.44805100560188293},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.40741491317749023},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3833793103694916},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3702985644340515},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.24956440925598145},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2201956808567047},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.20545992255210876},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.14393356442451477}],"concepts":[{"id":"https://openalex.org/C82142266","wikidata":"https://www.wikidata.org/wiki/Q3456604","display_name":"Dynamic Bayesian network","level":3,"score":0.8412383198738098},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.683702290058136},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6733570098876953},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.6361743211746216},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.551234245300293},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.546827495098114},{"id":"https://openalex.org/C151406439","wikidata":"https://www.wikidata.org/wiki/Q186588","display_name":"Time series","level":2,"score":0.540375828742981},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.486258864402771},{"id":"https://openalex.org/C8415881","wikidata":"https://www.wikidata.org/wiki/Q6839217","display_name":"Microarray analysis techniques","level":4,"score":0.4705890715122223},{"id":"https://openalex.org/C33724603","wikidata":"https://www.wikidata.org/wiki/Q812540","display_name":"Bayesian network","level":2,"score":0.45877087116241455},{"id":"https://openalex.org/C2777576037","wikidata":"https://www.wikidata.org/wiki/Q719725","display_name":"Saccharomyces cerevisiae","level":3,"score":0.44805100560188293},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.40741491317749023},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3833793103694916},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3702985644340515},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.24956440925598145},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2201956808567047},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.20545992255210876},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.14393356442451477}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1145/1854776.1854859","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1854776.1854859","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology","raw_type":"proceedings-article"},{"id":"pmh:oai:aquila.usm.edu:fac_pubs-19254","is_oa":false,"landing_page_url":"https://aquila.usm.edu/fac_pubs/17941","pdf_url":null,"source":{"id":"https://openalex.org/S4306402529","display_name":"Aquila Digital Community (University of Southern Mississippi)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I44854399","host_organization_name":"University of Southern Mississippi","host_organization_lineage":["https://openalex.org/I44854399"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Faculty Publications","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G7314163092","display_name":null,"funder_award_id":"EPS-0903787","funder_id":"https://openalex.org/F4320338283","funder_display_name":"Office of Experimental Program to Stimulate Competitive Research"},{"id":"https://openalex.org/G8519232957","display_name":null,"funder_award_id":"W912HZ-08-2-0011","funder_id":"https://openalex.org/F4320337538","funder_display_name":"U.S. Army Corps of Engineers"}],"funders":[{"id":"https://openalex.org/F4320337538","display_name":"U.S. Army Corps of Engineers","ror":"https://ror.org/05w4e8v21"},{"id":"https://openalex.org/F4320338283","display_name":"Office of Experimental Program to Stimulate Competitive Research","ror":"https://ror.org/04k9mqs78"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":12,"referenced_works":["https://openalex.org/W1481919380","https://openalex.org/W1600339875","https://openalex.org/W2023348596","https://openalex.org/W2026368892","https://openalex.org/W2046713384","https://openalex.org/W2090554117","https://openalex.org/W2103453943","https://openalex.org/W2110575115","https://openalex.org/W2124007391","https://openalex.org/W2136988691","https://openalex.org/W2154454113","https://openalex.org/W2160533336"],"related_works":["https://openalex.org/W2544242547","https://openalex.org/W3128072696","https://openalex.org/W2119218276","https://openalex.org/W2369018153","https://openalex.org/W2530648058","https://openalex.org/W2386937658","https://openalex.org/W2124007391","https://openalex.org/W2578973671","https://openalex.org/W2349909726","https://openalex.org/W1965576512"],"abstract_inverted_index":{"Inferring":[0],"gene":[1,51,63,77],"regulatory":[2,52],"networks":[3],"(GRNs)":[4],"is":[5,37,57,108],"a":[6,23,27],"challenging":[7],"inverse":[8],"problem.":[9],"Most":[10],"existing":[11],"approaches":[12,43],"have":[13,96],"understandably":[14],"low":[15],"accuracy":[16,89],"because":[17],"of":[18,22,30,39,54,69,73,83,90,106,119,132,154,170],"the":[19,40,46,67,74,81,87,104,142,166],"intrinsic":[20],"complexity":[21],"biology":[24],"system":[25],"and":[26,48,80,115,134,156,163,168],"limited":[28],"amount":[29],"available":[31],"data.":[32,65],"Dynamic":[33],"Bayesian":[34],"Network":[35],"(DBN)":[36],"one":[38],"widely":[41],"used":[42],"to":[44],"identify":[45],"signals":[47],"interactions":[49],"within":[50],"pathways":[53],"cells.":[55],"It":[56],"well-suited":[58],"for":[59,165],"characterizing":[60],"time":[61,75,84,128],"series":[62,76],"expression":[64,78],"However,":[66],"impacts":[68],"network":[70],"topology,":[71],"properties":[72],"data,":[79],"number":[82],"points":[85,129],"on":[86],"inference":[88,172],"DBN":[91,107],"are":[92],"still":[93],"unknown":[94],"or":[95],"not":[97],"been":[98],"fully":[99],"investigated.":[100],"In":[101],"this":[102],"paper,":[103],"performance":[105],"evaluated":[109],"using":[110],"both":[111],"in-silico":[112],"yeast":[113],"data":[114,125],"three":[116],"growth":[117],"phases":[118],"Yeast":[120],"Saccharomyces":[121,149],"cerevisiae":[122],"cell":[123],"cycle":[124],"with":[126,141],"different":[127],"in":[130,152],"terms":[131,153],"precision":[133,155],"recall.":[135,157],"The":[136],"inferred":[137],"GRNs":[138,144],"were":[139],"compared":[140],"actual":[143],"obtained":[145],"from":[146],"SGD":[147],"(The":[148],"Genome":[150],"Database)":[151],"This":[158],"work":[159],"may":[160],"provide":[161],"insight":[162],"guideline":[164],"development":[167],"improvement":[169],"GRN":[171],"methods.":[173]},"counts_by_year":[{"year":2014,"cited_by_count":1}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
