{"id":"https://openalex.org/W2008805274","doi":"https://doi.org/10.1145/1854776.1854853","title":"EGGSlicer","display_name":"EGGSlicer","publication_year":2010,"publication_date":"2010-08-02","ids":{"openalex":"https://openalex.org/W2008805274","doi":"https://doi.org/10.1145/1854776.1854853","mag":"2008805274"},"language":"en","primary_location":{"id":"doi:10.1145/1854776.1854853","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1854776.1854853","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101608081","display_name":"Heejoon Chae","orcid":"https://orcid.org/0000-0002-0960-5829"},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Heejoon Chae","raw_affiliation_strings":["Indiana University, Bloomington, Indiana"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Indiana University, Bloomington, Indiana","institution_ids":["https://openalex.org/I4210119109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024894867","display_name":"Kwangmin Choi","orcid":"https://orcid.org/0000-0003-4671-962X"},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kwangmin Choi","raw_affiliation_strings":["Indiana University, Bloomington, Indiana"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Indiana University, Bloomington, Indiana","institution_ids":["https://openalex.org/I4210119109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100460452","display_name":"Sun Kim","orcid":"https://orcid.org/0000-0003-3072-6649"},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sun Kim","raw_affiliation_strings":["Indiana University, Bloomington, Indiana"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Indiana University, Bloomington, Indiana","institution_ids":["https://openalex.org/I4210119109"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5081501512","display_name":"Haleh Ashki","orcid":null},"institutions":[{"id":"https://openalex.org/I103163165","display_name":"Florida State University","ror":"https://ror.org/05g3dte14","country_code":"US","type":"education","lineage":["https://openalex.org/I103163165"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Haleh Ashki","raw_affiliation_strings":["Florida State University, Tallahassee, Florida","Florida State University Tallahassee, Florida"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Florida State University, Tallahassee, Florida","institution_ids":["https://openalex.org/I103163165"]},{"raw_affiliation_string":"Florida State University Tallahassee, Florida","institution_ids":["https://openalex.org/I103163165"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.9236,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.75329429,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"448","last_page":"450"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.7526071667671204},{"id":"https://openalex.org/keywords/comparative-genomics","display_name":"Comparative genomics","score":0.6077011227607727},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5872114300727844},{"id":"https://openalex.org/keywords/gene-cluster","display_name":"Gene cluster","score":0.577215850353241},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5770827531814575},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.5637915134429932},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.523274302482605},{"id":"https://openalex.org/keywords/gene-ontology","display_name":"Gene ontology","score":0.5105034112930298},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4687756597995758},{"id":"https://openalex.org/keywords/cluster","display_name":"Cluster (spacecraft)","score":0.4461266100406647},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3781222105026245},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.34654152393341064},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3316141963005066}],"concepts":[{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7526071667671204},{"id":"https://openalex.org/C105176652","wikidata":"https://www.wikidata.org/wiki/Q1147112","display_name":"Comparative genomics","level":5,"score":0.6077011227607727},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5872114300727844},{"id":"https://openalex.org/C36857842","wikidata":"https://www.wikidata.org/wiki/Q1501261","display_name":"Gene cluster","level":3,"score":0.577215850353241},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5770827531814575},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.5637915134429932},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.523274302482605},{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.5105034112930298},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4687756597995758},{"id":"https://openalex.org/C164866538","wikidata":"https://www.wikidata.org/wiki/Q367351","display_name":"Cluster (spacecraft)","level":2,"score":0.4461266100406647},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3781222105026245},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.34654152393341064},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3316141963005066},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/1854776.1854853","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1854776.1854853","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1079002134","display_name":null,"funder_award_id":"MCB 0731950","funder_id":"https://openalex.org/F4320337397","funder_display_name":"Division of Molecular and Cellular Biosciences"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320337397","display_name":"Division of Molecular and Cellular Biosciences","ror":"https://ror.org/002jdaq33"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":10,"referenced_works":["https://openalex.org/W1647729745","https://openalex.org/W1995117714","https://openalex.org/W2063180750","https://openalex.org/W2102822646","https://openalex.org/W2128049108","https://openalex.org/W2130961331","https://openalex.org/W2149517531","https://openalex.org/W2151302772","https://openalex.org/W2913668833","https://openalex.org/W6636975626"],"related_works":["https://openalex.org/W1565527690","https://openalex.org/W1493660383","https://openalex.org/W2759519215","https://openalex.org/W2353729507","https://openalex.org/W4318240630","https://openalex.org/W2350466590","https://openalex.org/W1542620732","https://openalex.org/W3031625301","https://openalex.org/W4386771068","https://openalex.org/W2080758876"],"abstract_inverted_index":{"Predicting":[0],"conserved":[1,23,96],"gene":[2,24,97,104],"sets":[3],"in":[4,54,64],"genome":[5],"is":[6,71],"a":[7,14,89],"very":[8],"important":[9],"problem":[10],"and":[11,48],"there":[12],"are":[13,46,57],"number":[15],"of":[16,34,40,51,67,79],"algorithms":[17],"developed":[18,88],"for":[19,42],"the":[20,31,38,49,61,65,75],"task.":[21],"Unfortunately,":[22],"cluster":[25,56],"prediction":[26],"results":[27],"depend":[28],"largely":[29],"on":[30],"phylogenetic":[32],"distance":[33],"genomes.":[35],"In":[36],"particular,":[37],"sizes":[39],"clusters":[41,98],"closely":[43],"related":[44,101],"genomes":[45],"large":[47,95],"functions":[50,66],"these":[52,68],"genes":[53],"each":[55],"diverse.":[58],"Due":[59],"to":[60,73,93],"vast":[62],"diversity":[63],"genes,":[69],"it":[70],"difficult":[72],"define":[74],"precise":[76],"biological":[77],"meaning":[78],"those":[80],"genes.":[81],"To":[82],"address":[83],"this":[84],"problem,":[85],"we":[86],"have":[87],"comparative":[90],"genomics":[91],"approach":[92],"splitting":[94],"into":[99],"functionally":[100],"sub-clusters":[102],"using":[103],"ontology":[105],"information.":[106]},"counts_by_year":[],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2016-06-24T00:00:00"}
