{"id":"https://openalex.org/W1975972548","doi":"https://doi.org/10.1145/1854776.1854817","title":"Promoter prediction based on a multiple instance learning scheme","display_name":"Promoter prediction based on a multiple instance learning scheme","publication_year":2010,"publication_date":"2010-08-02","ids":{"openalex":"https://openalex.org/W1975972548","doi":"https://doi.org/10.1145/1854776.1854817","mag":"1975972548"},"language":"en","primary_location":{"id":"doi:10.1145/1854776.1854817","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1854776.1854817","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5109871626","display_name":"Xuefeng Zhou","orcid":null},"institutions":[{"id":"https://openalex.org/I204465549","display_name":"Washington University in St. Louis","ror":"https://ror.org/01yc7t268","country_code":"US","type":"education","lineage":["https://openalex.org/I204465549"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xuefeng Zhou","raw_affiliation_strings":["Washington University in Saint Louis, Saint Louis, MO"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Washington University in Saint Louis, Saint Louis, MO","institution_ids":["https://openalex.org/I204465549"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071995180","display_name":"Jianhua Ruan","orcid":"https://orcid.org/0000-0002-5622-3137"},"institutions":[{"id":"https://openalex.org/I45438204","display_name":"The University of Texas at San Antonio","ror":"https://ror.org/01kd65564","country_code":"US","type":"education","lineage":["https://openalex.org/I45438204"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jianhua Ruan","raw_affiliation_strings":["The University of Texas at San Antonio, San Antonio, TX"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The University of Texas at San Antonio, San Antonio, TX","institution_ids":["https://openalex.org/I45438204"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5068659777","display_name":"Weixiong Zhang","orcid":"https://orcid.org/0000-0002-4998-9791"},"institutions":[{"id":"https://openalex.org/I204465549","display_name":"Washington University in St. Louis","ror":"https://ror.org/01yc7t268","country_code":"US","type":"education","lineage":["https://openalex.org/I204465549"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Weixiong Zhang","raw_affiliation_strings":["Washington University in Saint Louis, Saint Louis, MO"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Washington University in Saint Louis, Saint Louis, MO","institution_ids":["https://openalex.org/I204465549"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"295","last_page":"301"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10824","display_name":"Image Retrieval and Classification Techniques","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10824","display_name":"Image Retrieval and Classification Techniques","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10627","display_name":"Advanced Image and Video Retrieval Techniques","score":0.9722999930381775,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11439","display_name":"Video Analysis and Summarization","score":0.935699999332428,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/promoter","display_name":"Promoter","score":0.8691008687019348},{"id":"https://openalex.org/keywords/complement","display_name":"Complement (music)","score":0.6385812759399414},{"id":"https://openalex.org/keywords/core","display_name":"Core (optical fiber)","score":0.6088259816169739},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5738892555236816},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5270735621452332},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.44898632168769836},{"id":"https://openalex.org/keywords/multi-core-processor","display_name":"Multi-core processor","score":0.4212758243083954},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3675670921802521},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3634754419326782},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.34759464859962463},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.332746684551239},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.19036054611206055},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.13889697194099426},{"id":"https://openalex.org/keywords/phenotype","display_name":"Phenotype","score":0.09985947608947754}],"concepts":[{"id":"https://openalex.org/C101762097","wikidata":"https://www.wikidata.org/wiki/Q224093","display_name":"Promoter","level":4,"score":0.8691008687019348},{"id":"https://openalex.org/C112313634","wikidata":"https://www.wikidata.org/wiki/Q7886648","display_name":"Complement (music)","level":5,"score":0.6385812759399414},{"id":"https://openalex.org/C2164484","wikidata":"https://www.wikidata.org/wiki/Q5170150","display_name":"Core (optical fiber)","level":2,"score":0.6088259816169739},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5738892555236816},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5270735621452332},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.44898632168769836},{"id":"https://openalex.org/C78766204","wikidata":"https://www.wikidata.org/wiki/Q555032","display_name":"Multi-core processor","level":2,"score":0.4212758243083954},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3675670921802521},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3634754419326782},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.34759464859962463},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.332746684551239},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.19036054611206055},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.13889697194099426},{"id":"https://openalex.org/C127716648","wikidata":"https://www.wikidata.org/wiki/Q104053","display_name":"Phenotype","level":3,"score":0.09985947608947754},{"id":"https://openalex.org/C188082640","wikidata":"https://www.wikidata.org/wiki/Q1780899","display_name":"Complementation","level":4,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/1854776.1854817","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1854776.1854817","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2342478773","display_name":null,"funder_award_id":"IIS-0535257DBI-0743797","funder_id":"https://openalex.org/F4320337389","funder_display_name":"Division of Information and Intelligent Systems"},{"id":"https://openalex.org/G3556677361","display_name":null,"funder_award_id":"IIS-0535257DBI-0743797","funder_id":"https://openalex.org/F4320337398","funder_display_name":"Division of Biological Infrastructure"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320337389","display_name":"Division of Information and Intelligent Systems","ror":"https://ror.org/053a2cp42"},{"id":"https://openalex.org/F4320337398","display_name":"Division of Biological Infrastructure","ror":"https://ror.org/04qn9mx93"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":29,"referenced_works":["https://openalex.org/W1483806449","https://openalex.org/W1504694836","https://openalex.org/W1932076246","https://openalex.org/W1972875048","https://openalex.org/W1994814273","https://openalex.org/W2019462186","https://openalex.org/W2027349221","https://openalex.org/W2048633601","https://openalex.org/W2057692691","https://openalex.org/W2064390432","https://openalex.org/W2093163894","https://openalex.org/W2097353028","https://openalex.org/W2098166271","https://openalex.org/W2102304447","https://openalex.org/W2104730528","https://openalex.org/W2106756765","https://openalex.org/W2110119381","https://openalex.org/W2123504579","https://openalex.org/W2128458774","https://openalex.org/W2130919037","https://openalex.org/W2137458297","https://openalex.org/W2141280900","https://openalex.org/W2148503087","https://openalex.org/W2154318594","https://openalex.org/W2164260861","https://openalex.org/W2170698318","https://openalex.org/W2466512847","https://openalex.org/W4230762363","https://openalex.org/W7055702063"],"related_works":["https://openalex.org/W1969771092","https://openalex.org/W2795723184","https://openalex.org/W2025529750","https://openalex.org/W2891858816","https://openalex.org/W184057646","https://openalex.org/W2042874675","https://openalex.org/W129398428","https://openalex.org/W3212414177","https://openalex.org/W2007418658","https://openalex.org/W4391230627"],"abstract_inverted_index":{"Core":[0],"promoters":[1,13,34,58,93],"are":[2],"crucial":[3],"regions":[4],"for":[5,90],"initiation":[6],"of":[7,11,19,24,28,56,59,78,124],"gene":[8],"transcription.":[9],"Identification":[10],"core":[12,33,57,71,92],"is":[14,35,41,62],"important":[15],"to":[16,43,47,130],"the":[17,70,79,113],"understanding":[18],"transcriptional":[20],"regulation":[21],"and":[22,37,49,100,134],"elucidation":[23],"relationships":[25],"among":[26],"genes":[27],"an":[29],"organism.":[30],"Experimentally":[31],"locating":[32],"laborious":[36],"costly.":[38],"Therefore,":[39],"it":[40],"desirable":[42],"develop":[44,86],"computational":[45,54,106],"approaches":[46],"support":[48],"complement":[50],"experimental":[51],"methods.":[52],"However,":[53],"prediction":[55,73,98],"eukaryotic":[60],"species":[61],"challenging.":[63],"In":[64],"this":[65],"paper,":[66],"we":[67],"first":[68],"formulate":[69],"promoter":[72],"problem":[74],"as":[75],"a":[76,87,95,101],"variation":[77],"multiple":[80,114,126],"instance":[81,115,127],"learning":[82,116,128],"problem.":[83],"We":[84],"then":[85],"new":[88],"algorithm":[89],"identifying":[91],"with":[94],"high":[96,102],"positive":[97],"rate":[99],"sensitivity.":[103],"Since":[104],"many":[105],"biology":[107,132],"problems":[108,133],"can":[109],"be":[110],"formulated":[111],"under":[112],"paradigm,":[117],"our":[118,135],"approach":[119],"may":[120,137],"inspire":[121],"future":[122],"research":[123],"applying":[125],"techniques":[129],"complex":[131],"method":[136],"have":[138],"broad":[139],"potential":[140],"applications.":[141]},"counts_by_year":[{"year":2016,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
