{"id":"https://openalex.org/W2168401659","doi":"https://doi.org/10.1145/1854776.1854801","title":"REAL","display_name":"REAL","publication_year":2010,"publication_date":"2010-08-02","ids":{"openalex":"https://openalex.org/W2168401659","doi":"https://doi.org/10.1145/1854776.1854801","mag":"2168401659"},"language":"en","primary_location":{"id":"doi:10.1145/1854776.1854801","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1854776.1854801","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5050753239","display_name":"Kimon Frousios","orcid":null},"institutions":[{"id":"https://openalex.org/I183935753","display_name":"King's College London","ror":"https://ror.org/0220mzb33","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I183935753"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Kimon Frousios","raw_affiliation_strings":["King's College London, London, England, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"King's College London, London, England, United Kingdom","institution_ids":["https://openalex.org/I183935753"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058155947","display_name":"Costas S. Iliopoulos","orcid":"https://orcid.org/0000-0003-3909-0077"},"institutions":[{"id":"https://openalex.org/I183935753","display_name":"King's College London","ror":"https://ror.org/0220mzb33","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I183935753"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Costas S. Iliopoulos","raw_affiliation_strings":["King's College London, London, England, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"King's College London, London, England, United Kingdom","institution_ids":["https://openalex.org/I183935753"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061052367","display_name":"Laurent Mouchard","orcid":null},"institutions":[{"id":"https://openalex.org/I62396329","display_name":"Universit\u00e9 de Rouen Normandie","ror":"https://ror.org/03nhjew95","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210105918","https://openalex.org/I62396329"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Laurent Mouchard","raw_affiliation_strings":["Universit\u00e9 de Rouen, Mont Saint Aignan, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universit\u00e9 de Rouen, Mont Saint Aignan, France","institution_ids":["https://openalex.org/I62396329"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051275317","display_name":"Solon P. Pissis","orcid":"https://orcid.org/0000-0002-1445-1932"},"institutions":[{"id":"https://openalex.org/I183935753","display_name":"King's College London","ror":"https://ror.org/0220mzb33","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I183935753"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Solon P. Pissis","raw_affiliation_strings":["King's College London, London, England, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"King's College London, London, England, United Kingdom","institution_ids":["https://openalex.org/I183935753"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5001423258","display_name":"German Tischler","orcid":null},"institutions":[{"id":"https://openalex.org/I183935753","display_name":"King's College London","ror":"https://ror.org/0220mzb33","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I183935753"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"German Tischler","raw_affiliation_strings":["King's College London, London, England, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"King's College London, London, England, United Kingdom","institution_ids":["https://openalex.org/I183935753"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":5.7218,"has_fulltext":false,"cited_by_count":31,"citation_normalized_percentile":{"value":0.97265399,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":null,"issue":null,"first_page":"154","last_page":"159"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11247","display_name":"Plant nutrient uptake and metabolism","score":0.9918000102043152,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7971991300582886},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6479289531707764},{"id":"https://openalex.org/keywords/hash-function","display_name":"Hash function","score":0.5535764694213867},{"id":"https://openalex.org/keywords/reference-genome","display_name":"Reference genome","score":0.48181572556495667},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.43927091360092163},{"id":"https://openalex.org/keywords/hash-table","display_name":"Hash table","score":0.4300293028354645},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3369657099246979},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.13381800055503845},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.10190913081169128}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7971991300582886},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6479289531707764},{"id":"https://openalex.org/C99138194","wikidata":"https://www.wikidata.org/wiki/Q183427","display_name":"Hash function","level":2,"score":0.5535764694213867},{"id":"https://openalex.org/C192953774","wikidata":"https://www.wikidata.org/wiki/Q7307127","display_name":"Reference genome","level":4,"score":0.48181572556495667},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.43927091360092163},{"id":"https://openalex.org/C67388219","wikidata":"https://www.wikidata.org/wiki/Q207440","display_name":"Hash table","level":3,"score":0.4300293028354645},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3369657099246979},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.13381800055503845},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.10190913081169128},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1145/1854776.1854801","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1854776.1854801","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology","raw_type":"proceedings-article"},{"id":"pmh:oai:kclpure.kcl.ac.uk:publications/4e4054e1-1f6f-4704-b2d2-fc2296886948","is_oa":false,"landing_page_url":"https://kclpure.kcl.ac.uk/portal/en/publications/4e4054e1-1f6f-4704-b2d2-fc2296886948","pdf_url":null,"source":{"id":"https://openalex.org/S4306400216","display_name":"Research Portal (King's College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I183935753","host_organization_name":"King's College London","host_organization_lineage":["https://openalex.org/I183935753"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Frousios, K, Iliopoulos, C S, Mouchard, L, Pissis, S P & Tischler, G 2010, REAL: an efficient REad ALigner for next generation sequencing reads. in BCB '10 Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology. pp. 154-159, BCB' 10 ACM International Conference on Bioinformatics and Computational Biology, Niagara Falls, NY, United States, 2/08/2010. https://doi.org/10.1145/1854776.1854801","raw_type":"contributionToPeriodical"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":26,"referenced_works":["https://openalex.org/W1820394219","https://openalex.org/W1851713763","https://openalex.org/W1966822396","https://openalex.org/W1972924519","https://openalex.org/W2001496424","https://openalex.org/W2015292449","https://openalex.org/W2036210716","https://openalex.org/W2055043387","https://openalex.org/W2092784580","https://openalex.org/W2096441981","https://openalex.org/W2097341408","https://openalex.org/W2097862362","https://openalex.org/W2103441770","https://openalex.org/W2112113834","https://openalex.org/W2124985265","https://openalex.org/W2126711065","https://openalex.org/W2136145671","https://openalex.org/W2138270253","https://openalex.org/W2139760555","https://openalex.org/W2140743149","https://openalex.org/W2153527981","https://openalex.org/W2154431984","https://openalex.org/W2161488606","https://openalex.org/W2161546116","https://openalex.org/W4302591804","https://openalex.org/W6682761550"],"related_works":["https://openalex.org/W2159024673","https://openalex.org/W3001987467","https://openalex.org/W2968165261","https://openalex.org/W1603161560","https://openalex.org/W2144265691","https://openalex.org/W1605991620","https://openalex.org/W113683524","https://openalex.org/W4387251676","https://openalex.org/W4385261619","https://openalex.org/W2107233609"],"abstract_inverted_index":{"Motivation:":[0],"The":[1],"constant":[2],"advances":[3],"in":[4,16,31],"sequencing":[5,10],"technology":[6],"are":[7],"turning":[8],"whole-genome":[9],"into":[11],"a":[12,45,110],"routine":[13],"procedure,":[14],"resulting":[15],"massive":[17],"amounts":[18],"of":[19,27,29,34,52],"data":[20,30],"that":[21,117],"need":[22,37],"to":[23,38,42],"be":[24,39],"processed.":[25],"Tens":[26],"gigabytes":[28],"the":[32,62],"form":[33],"short":[35,53,99],"reads":[36,100],"mapped":[40],"back":[41],"reference":[43],"sequences,":[44],"few":[46],"gigabases":[47],"long.":[48],"A":[49],"first":[50],"generation":[51,65,104],"read":[54],"alignment":[55],"software":[56],"successfully":[57],"employed":[58],"hash":[59],"tables,":[60],"and":[61,80,94,120],"current":[63,122],"second":[64],"uses":[66],"Burrows-Wheeler":[67],"Transform,":[68],"further":[69],"improving":[70],"mapping":[71,115],"speed.":[72],"However,":[73],"there":[74],"is":[75,107],"still":[76],"demand":[77],"for":[78,97],"faster":[79],"more":[81],"accurate":[82,93],"mapping.<br/><br/>Results:":[83],"In":[84],"this":[85],"paper,":[86],"we":[87],"present":[88],"REad":[89],"ALigner,":[90],"an":[91],"efficient,":[92],"consistent":[95],"tool":[96],"aligning":[98],"obtained":[101],"from":[102],"next":[103],"sequencing.":[105],"It":[106],"based":[108],"on":[109],"new,":[111],"simple,":[112],"yet":[113],"efficient":[114],"algorithm":[116],"can":[118],"match":[119],"outperform":[121],"BWT-based":[123],"software.":[124]},"counts_by_year":[{"year":2019,"cited_by_count":2},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":8},{"year":2012,"cited_by_count":7}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2016-06-24T00:00:00"}
