{"id":"https://openalex.org/W2052467980","doi":"https://doi.org/10.1145/1854776.1854788","title":"Genome-wide compatible SNP intervals and their properties","display_name":"Genome-wide compatible SNP intervals and their properties","publication_year":2010,"publication_date":"2010-08-02","ids":{"openalex":"https://openalex.org/W2052467980","doi":"https://doi.org/10.1145/1854776.1854788","mag":"2052467980","pmid":"https://pubmed.ncbi.nlm.nih.gov/29152612"},"language":"en","primary_location":{"id":"doi:10.1145/1854776.1854788","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1854776.1854788","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5053736401","display_name":"Jeremy Wang","orcid":"https://orcid.org/0000-0002-0673-9418"},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jeremy Wang","raw_affiliation_strings":["University of North Carolina, Chapel Hill, NC","University of North Carolina, Chapel, Hill, NC#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of North Carolina, Chapel Hill, NC","institution_ids":["https://openalex.org/I114027177"]},{"raw_affiliation_string":"University of North Carolina, Chapel, Hill, NC#TAB#","institution_ids":["https://openalex.org/I114027177"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5104203339","display_name":"Kyle J. Moore","orcid":null},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kyle J. Moore","raw_affiliation_strings":["University of North Carolina, Chapel Hill, NC","University of North Carolina, Chapel, Hill, NC#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of North Carolina, Chapel Hill, NC","institution_ids":["https://openalex.org/I114027177"]},{"raw_affiliation_string":"University of North Carolina, Chapel, Hill, NC#TAB#","institution_ids":["https://openalex.org/I114027177"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100360224","display_name":"Qi Zhang","orcid":"https://orcid.org/0000-0001-7959-817X"},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Qi Zhang","raw_affiliation_strings":["University of North Carolina, Chapel Hill, NC","University of North Carolina, Chapel, Hill, NC#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of North Carolina, Chapel Hill, NC","institution_ids":["https://openalex.org/I114027177"]},{"raw_affiliation_string":"University of North Carolina, Chapel, Hill, NC#TAB#","institution_ids":["https://openalex.org/I114027177"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072902026","display_name":"Fernando Pardo-Manual de Villena","orcid":null},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Fernando Pardo-Manual de Villena","raw_affiliation_strings":["University of North Carolina, Chapel Hill, NC","University of North Carolina, Chapel, Hill, NC#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of North Carolina, Chapel Hill, NC","institution_ids":["https://openalex.org/I114027177"]},{"raw_affiliation_string":"University of North Carolina, Chapel, Hill, NC#TAB#","institution_ids":["https://openalex.org/I114027177"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100392089","display_name":"Wei Wang","orcid":"https://orcid.org/0000-0002-8180-2886"},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Wei Wang","raw_affiliation_strings":["University of North Carolina, Chapel Hill, NC","University of North Carolina, Chapel, Hill, NC#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of North Carolina, Chapel Hill, NC","institution_ids":["https://openalex.org/I114027177"]},{"raw_affiliation_string":"University of North Carolina, Chapel, Hill, NC#TAB#","institution_ids":["https://openalex.org/I114027177"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5042463953","display_name":"Leonard McMillan","orcid":"https://orcid.org/0000-0002-8453-0847"},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Leonard McMillan","raw_affiliation_strings":["University of North Carolina, Chapel Hill, NC","University of North Carolina, Chapel, Hill, NC#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of North Carolina, Chapel Hill, NC","institution_ids":["https://openalex.org/I114027177"]},{"raw_affiliation_string":"University of North Carolina, Chapel, Hill, NC#TAB#","institution_ids":["https://openalex.org/I114027177"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.3336,"has_fulltext":false,"cited_by_count":19,"citation_normalized_percentile":{"value":0.82296862,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"160","issue":null,"first_page":"43","last_page":"52"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.7419857978820801},{"id":"https://openalex.org/keywords/intraspecific-competition","display_name":"Intraspecific competition","score":0.6288096904754639},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.6083893775939941},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5688153505325317},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5080862045288086},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.48543721437454224},{"id":"https://openalex.org/keywords/recombination","display_name":"Recombination","score":0.46737828850746155},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.46531227231025696},{"id":"https://openalex.org/keywords/snp","display_name":"SNP","score":0.45915475487709045},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3703879714012146},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3600556254386902},{"id":"https://openalex.org/keywords/single-nucleotide-polymorphism","display_name":"Single-nucleotide polymorphism","score":0.14288866519927979},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.07398819923400879},{"id":"https://openalex.org/keywords/genotype","display_name":"Genotype","score":0.06319448351860046}],"concepts":[{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7419857978820801},{"id":"https://openalex.org/C131892835","wikidata":"https://www.wikidata.org/wiki/Q770985","display_name":"Intraspecific competition","level":2,"score":0.6288096904754639},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.6083893775939941},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5688153505325317},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5080862045288086},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.48543721437454224},{"id":"https://openalex.org/C156695909","wikidata":"https://www.wikidata.org/wiki/Q3373825","display_name":"Recombination","level":3,"score":0.46737828850746155},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.46531227231025696},{"id":"https://openalex.org/C139275648","wikidata":"https://www.wikidata.org/wiki/Q17134011","display_name":"SNP","level":5,"score":0.45915475487709045},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3703879714012146},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3600556254386902},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.14288866519927979},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.07398819923400879},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.06319448351860046},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1145/1854776.1854788","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1854776.1854788","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology","raw_type":"proceedings-article"},{"id":"pmid:29152612","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29152612","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The 2010 ACM International Conference on Bioinformatics and Computational Biology : ACM-BCB 2010 : Niagara Falls, New York, U.S.A., August 2-4, 2010. ACM International Conference on Bioinformatics and Computational Biology (1st : 2010 :...","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.221.3313","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.221.3313","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cs.unc.edu/%7Eweiwang/paper/ACMBCB10_1.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.227.6423","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.227.6423","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cs.unc.edu/%7Ejrwang/bcb2010.pdf","raw_type":"text"},{"id":"pmh:oai:europepmc.org:4601573","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5690570","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":57,"referenced_works":["https://openalex.org/W1483741134","https://openalex.org/W1508985588","https://openalex.org/W1523630858","https://openalex.org/W1580119864","https://openalex.org/W1702002942","https://openalex.org/W1936926787","https://openalex.org/W1971836750","https://openalex.org/W1973769499","https://openalex.org/W1977708739","https://openalex.org/W1978136801","https://openalex.org/W1982994867","https://openalex.org/W1987646246","https://openalex.org/W1987704665","https://openalex.org/W1988319284","https://openalex.org/W1994030486","https://openalex.org/W1994762509","https://openalex.org/W2004318096","https://openalex.org/W2005915210","https://openalex.org/W2008323735","https://openalex.org/W2009844552","https://openalex.org/W2025306791","https://openalex.org/W2029039045","https://openalex.org/W2041226831","https://openalex.org/W2042441137","https://openalex.org/W2056113107","https://openalex.org/W2066358615","https://openalex.org/W2089718377","https://openalex.org/W2092396774","https://openalex.org/W2094540363","https://openalex.org/W2097276024","https://openalex.org/W2098919825","https://openalex.org/W2114757914","https://openalex.org/W2116404859","https://openalex.org/W2116652744","https://openalex.org/W2128316026","https://openalex.org/W2128858663","https://openalex.org/W2129588663","https://openalex.org/W2135732313","https://openalex.org/W2138775195","https://openalex.org/W2152664025","https://openalex.org/W2153822291","https://openalex.org/W2154651106","https://openalex.org/W2155286781","https://openalex.org/W2156087909","https://openalex.org/W2156341632","https://openalex.org/W2156852759","https://openalex.org/W2157050695","https://openalex.org/W2161351649","https://openalex.org/W2164628101","https://openalex.org/W2165123153","https://openalex.org/W2196453861","https://openalex.org/W2217809488","https://openalex.org/W2752885492","https://openalex.org/W3145128584","https://openalex.org/W6647264547","https://openalex.org/W6657756296","https://openalex.org/W7029321148"],"related_works":["https://openalex.org/W1525303497","https://openalex.org/W2811459610","https://openalex.org/W2004764425","https://openalex.org/W2164605607","https://openalex.org/W4245136235","https://openalex.org/W2912837731","https://openalex.org/W50819732","https://openalex.org/W2387296490","https://openalex.org/W2104066613","https://openalex.org/W2413230479"],"abstract_inverted_index":{"Intraspecific":[0],"genomes":[1],"can":[2],"be":[3,191],"subdivided":[4],"into":[5,59,94],"blocks":[6,17,60],"with":[7,31],"limited":[8],"diversity.":[9],"Understanding":[10],"the":[11,26,35,78,88,110,145,153,181],"distribution":[12],"and":[13,42,50,103],"structure":[14],"of":[15,28,38,45,72,87,90,99,113,147,180,197],"these":[16],"will":[18],"help":[19],"to":[20,116,138,190,193],"unravel":[21],"many":[22],"biological":[23],"problems":[24],"including":[25],"identification":[27],"genes":[29],"associated":[30],"complex":[32],"diseases,":[33],"finding":[34],"ancestral":[36],"origins":[37],"a":[39,57,84,92,194],"given":[40],"population,":[41],"localizing":[43],"regions":[44],"historical":[46],"recombination,":[47],"gene":[48],"conversion,":[49],"homoplasy.":[51],"We":[52,142,160],"present":[53],"methods":[54,186],"for":[55,61,163],"partitioning":[56,164],"genome":[58,74,93],"which":[62],"there":[63],"are":[64,128,136],"no":[65],"apparent":[66],"recombinations,":[67],"thus":[68],"providing":[69,105],"parsimonious":[70],"sets":[71],"compatible":[73,95],"intervals":[75,114],"based":[76],"on":[77,109],"four-gamete":[79,183],"test.":[80,184],"Our":[81],"contribution":[82],"is":[83],"thorough":[85],"analysis":[86],"problem":[89],"dividing":[91],"intervals,":[96],"in":[97],"terms":[98],"its":[100],"computational":[101],"complexity,":[102],"by":[104],"an":[106,118,148],"achievable":[107],"lower-bound":[108],"minimal":[111,125],"number":[112],"required":[115],"cover":[117],"entire":[119],"data":[120,167,177,199],"set.":[121],"In":[122],"general,":[123],"such":[124],"interval":[126,149,154,158],"partitions":[127],"not":[129],"unique.":[130],"However,":[131],"we":[132],"identify":[133],"properties":[134],"that":[135,151],"common":[137],"every":[139],"possible":[140],"solution.":[141],"also":[143],"define":[144],"notion":[146],"set":[150],"achieves":[152],"lower-bound,":[155],"yet":[156],"maximizes":[157],"overlap.":[159],"demonstrate":[161],"algorithms":[162,189],"both":[165],"haplotype":[166],"from":[168],"inbred":[169],"mice":[170],"as":[171,173],"well":[172],"outbred":[174],"heterozygous":[175],"genotype":[176],"using":[178],"extensions":[179],"standard":[182],"These":[185],"allow":[187],"our":[188],"applied":[192],"wide":[195],"range":[196],"genomic":[198],"sets.":[200]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":4}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
