{"id":"https://openalex.org/W1984560443","doi":"https://doi.org/10.1145/1851476.1851544","title":"Cloud computing paradigms for pleasingly parallel biomedical applications","display_name":"Cloud computing paradigms for pleasingly parallel biomedical applications","publication_year":2010,"publication_date":"2010-06-21","ids":{"openalex":"https://openalex.org/W1984560443","doi":"https://doi.org/10.1145/1851476.1851544","mag":"1984560443"},"language":"en","primary_location":{"id":"doi:10.1145/1851476.1851544","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1851476.1851544","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 19th ACM International Symposium on High Performance Distributed Computing","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5053808074","display_name":"Thilina Gunarathne","orcid":null},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Thilina Gunarathne","raw_affiliation_strings":["Indiana University, Bloomington","Indiana University. Bloomington"],"affiliations":[{"raw_affiliation_string":"Indiana University, Bloomington","institution_ids":["https://openalex.org/I4210119109"]},{"raw_affiliation_string":"Indiana University. Bloomington","institution_ids":["https://openalex.org/I4210119109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003566354","display_name":"Tak\u2010Lon Wu","orcid":null},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tak-Lon Wu","raw_affiliation_strings":["Indiana University, Bloomington","Indiana University. Bloomington"],"affiliations":[{"raw_affiliation_string":"Indiana University, Bloomington","institution_ids":["https://openalex.org/I4210119109"]},{"raw_affiliation_string":"Indiana University. Bloomington","institution_ids":["https://openalex.org/I4210119109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108081911","display_name":"Judy Qiu","orcid":null},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Judy Qiu","raw_affiliation_strings":["Indiana University, Bloomington","Indiana University. Bloomington"],"affiliations":[{"raw_affiliation_string":"Indiana University, Bloomington","institution_ids":["https://openalex.org/I4210119109"]},{"raw_affiliation_string":"Indiana University. Bloomington","institution_ids":["https://openalex.org/I4210119109"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5108016089","display_name":"Geoffrey Fox","orcid":"https://orcid.org/0000-0001-8198-4117"},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Geoffrey Fox","raw_affiliation_strings":["Indiana University, Bloomington","Indiana University. Bloomington"],"affiliations":[{"raw_affiliation_string":"Indiana University, Bloomington","institution_ids":["https://openalex.org/I4210119109"]},{"raw_affiliation_string":"Indiana University. Bloomington","institution_ids":["https://openalex.org/I4210119109"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5053808074"],"corresponding_institution_ids":["https://openalex.org/I4210119109"],"apc_list":null,"apc_paid":null,"fwci":27.3687,"has_fulltext":false,"cited_by_count":67,"citation_normalized_percentile":{"value":0.99453494,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":null,"issue":null,"first_page":"460","last_page":"469"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10101","display_name":"Cloud Computing and Resource Management","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10101","display_name":"Cloud Computing and Resource Management","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9850999712944031,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10772","display_name":"Distributed systems and fault tolerance","score":0.9783999919891357,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.8562363982200623},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8483136892318726},{"id":"https://openalex.org/keywords/leverage","display_name":"Leverage (statistics)","score":0.6430445313453674},{"id":"https://openalex.org/keywords/data-intensive-computing","display_name":"Data-intensive computing","score":0.6205477118492126},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.6079641580581665},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.5926085710525513},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5312103033065796},{"id":"https://openalex.org/keywords/usability","display_name":"Usability","score":0.457973450422287},{"id":"https://openalex.org/keywords/big-data","display_name":"Big data","score":0.4369620084762573},{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.4367449879646301},{"id":"https://openalex.org/keywords/software-as-a-service","display_name":"Software as a service","score":0.4176813066005707},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3201463222503662},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.2636669874191284},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.26146960258483887},{"id":"https://openalex.org/keywords/software-development","display_name":"Software development","score":0.17690560221672058},{"id":"https://openalex.org/keywords/grid-computing","display_name":"Grid computing","score":0.1705351173877716},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.11360397934913635},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.08377113938331604}],"concepts":[{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.8562363982200623},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8483136892318726},{"id":"https://openalex.org/C153083717","wikidata":"https://www.wikidata.org/wiki/Q6535263","display_name":"Leverage (statistics)","level":2,"score":0.6430445313453674},{"id":"https://openalex.org/C76831024","wikidata":"https://www.wikidata.org/wiki/Q5227096","display_name":"Data-intensive computing","level":4,"score":0.6205477118492126},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.6079641580581665},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.5926085710525513},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5312103033065796},{"id":"https://openalex.org/C170130773","wikidata":"https://www.wikidata.org/wiki/Q216378","display_name":"Usability","level":2,"score":0.457973450422287},{"id":"https://openalex.org/C75684735","wikidata":"https://www.wikidata.org/wiki/Q858810","display_name":"Big data","level":2,"score":0.4369620084762573},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.4367449879646301},{"id":"https://openalex.org/C175133352","wikidata":"https://www.wikidata.org/wiki/Q1254596","display_name":"Software as a service","level":4,"score":0.4176813066005707},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3201463222503662},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.2636669874191284},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.26146960258483887},{"id":"https://openalex.org/C529173508","wikidata":"https://www.wikidata.org/wiki/Q638608","display_name":"Software development","level":3,"score":0.17690560221672058},{"id":"https://openalex.org/C70429105","wikidata":"https://www.wikidata.org/wiki/Q249999","display_name":"Grid computing","level":3,"score":0.1705351173877716},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.11360397934913635},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.08377113938331604},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C187691185","wikidata":"https://www.wikidata.org/wiki/Q2020720","display_name":"Grid","level":2,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/1851476.1851544","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1851476.1851544","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 19th ACM International Symposium on High Performance Distributed Computing","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.6399999856948853,"display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G130175469","display_name":null,"funder_award_id":"RC2HG005806-02","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":24,"referenced_works":["https://openalex.org/W10141861","https://openalex.org/W1493893823","https://openalex.org/W1726174625","https://openalex.org/W1759247996","https://openalex.org/W1966031848","https://openalex.org/W2046079134","https://openalex.org/W2049633694","https://openalex.org/W2100830825","https://openalex.org/W2117466692","https://openalex.org/W2121762798","https://openalex.org/W2124644390","https://openalex.org/W2131229759","https://openalex.org/W2133288847","https://openalex.org/W2142678478","https://openalex.org/W2147220268","https://openalex.org/W2160777802","https://openalex.org/W2166265186","https://openalex.org/W2173213060","https://openalex.org/W2283571372","https://openalex.org/W2399869838","https://openalex.org/W4246354968","https://openalex.org/W6637607392","https://openalex.org/W6712738254","https://openalex.org/W7048738093"],"related_works":["https://openalex.org/W1864280877","https://openalex.org/W3173750053","https://openalex.org/W4206347313","https://openalex.org/W2051861582","https://openalex.org/W2186039352","https://openalex.org/W2170955077","https://openalex.org/W2098734934","https://openalex.org/W2794238232","https://openalex.org/W2371222978","https://openalex.org/W2794953737"],"abstract_inverted_index":{"Cloud":[0,143],"computing":[1,8,97,147],"offers":[2],"exciting":[3],"new":[4],"approaches":[5,51],"for":[6,159],"scientific":[7,33],"that":[9],"leverages":[10],"the":[11,38,41,85,126,141,150,160,166,171,180,184,189,192],"hardware":[12],"and":[13,35,102,117,122,128,140,149,157],"software":[14],"investments":[15],"on":[16,37,136,188],"large":[17],"scale":[18],"data":[19,45,58,112],"centers":[20],"by":[21],"major":[22],"commercial":[23],"players.":[24],"Loosely":[25],"coupled":[26],"problems":[27],"are":[28,36],"very":[29],"important":[30],"in":[31,84,168],"many":[32],"fields":[34],"rise":[39],"with":[40],"ongoing":[42],"move":[43],"towards":[44],"intensive":[46],"computing.":[47],"There":[48],"exist":[49],"several":[50],"to":[52,61,182],"leverage":[53],"clouds":[54],"&":[55],"cloud":[56,92],"oriented":[57],"processing":[59,113],"frameworks":[60,127],"perform":[62,129],"pleasingly":[63,72],"parallel":[64,73],"computations.":[65],"In":[66],"this":[67],"paper":[68],"we":[69,162],"present":[70],"two":[71],"biomedical":[74],"applications,":[75],"1)":[76],"assembly":[77],"of":[78,87,99,125,191],"genome":[79],"fragments":[80],"2)":[81],"dimension":[82],"reduction":[83],"analysis":[86],"chemical":[88],"structures,":[89],"implemented":[90],"utilizing":[91,109],"infrastructure":[93],"service":[94,144],"based":[95,111,135,145,187],"utility":[96,146],"models":[98],"Amazon":[100],"AWS":[101],"Microsoft":[103,118],"Windows":[104],"Azure":[105],"as":[106,108],"well":[107],"MapReduce":[110],"frameworks,":[114],"Apache":[115],"Hadoop":[116],"DryadLINQ.":[119],"We":[120,164],"review":[121],"compare":[123],"each":[124],"a":[130],"comparative":[131],"study":[132],"among":[133],"them":[134],"performance,":[137],"efficiency,":[138],"cost":[139,169],"usability.":[142],"model":[148],"managed":[151],"parallelism":[152],"(MapReduce)":[153],"exhibited":[154],"comparable":[155],"performance":[156],"efficiencies":[158],"applications":[161],"considered.":[163],"analyze":[165],"variations":[167],"between":[170],"different":[172],"platform":[173,186],"choices":[174],"(eg:":[175],"EC2":[176],"instance":[177],"types),":[178],"highlighting":[179],"need":[181],"select":[183],"appropriate":[185],"nature":[190],"computation.":[193]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":5},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":7},{"year":2013,"cited_by_count":12},{"year":2012,"cited_by_count":10}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
