{"id":"https://openalex.org/W1969196411","doi":"https://doi.org/10.1145/1830483.1830519","title":"Initialization parameter sweep in ATHENA","display_name":"Initialization parameter sweep in ATHENA","publication_year":2010,"publication_date":"2010-07-07","ids":{"openalex":"https://openalex.org/W1969196411","doi":"https://doi.org/10.1145/1830483.1830519","mag":"1969196411","pmid":"https://pubmed.ncbi.nlm.nih.gov/21152364"},"language":"en","primary_location":{"id":"doi:10.1145/1830483.1830519","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1830483.1830519","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 12th annual conference on Genetic and evolutionary computation","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2997651","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5070328286","display_name":"Emily Holzinger","orcid":"https://orcid.org/0000-0002-1298-4508"},"institutions":[{"id":"https://openalex.org/I901861585","display_name":"Vanderbilt University Medical Center","ror":"https://ror.org/05dq2gs74","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210162197","https://openalex.org/I901861585"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Emily Rose Holzinger","raw_affiliation_strings":["Vanderbilt University Medical Center, Nashville, TN, USA","Vanderbilt University Medical Center, Nashville, TN, USA -"],"affiliations":[{"raw_affiliation_string":"Vanderbilt University Medical Center, Nashville, TN, USA","institution_ids":["https://openalex.org/I901861585"]},{"raw_affiliation_string":"Vanderbilt University Medical Center, Nashville, TN, USA -","institution_ids":["https://openalex.org/I901861585"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015708066","display_name":"Carrie C Buchanan","orcid":null},"institutions":[{"id":"https://openalex.org/I901861585","display_name":"Vanderbilt University Medical Center","ror":"https://ror.org/05dq2gs74","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210162197","https://openalex.org/I901861585"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Carrie C. Buchanan","raw_affiliation_strings":["Vanderbilt University Medical Center, Nashville, TN, USA","Vanderbilt University Medical Center, Nashville, TN, USA -"],"affiliations":[{"raw_affiliation_string":"Vanderbilt University Medical Center, Nashville, TN, USA","institution_ids":["https://openalex.org/I901861585"]},{"raw_affiliation_string":"Vanderbilt University Medical Center, Nashville, TN, USA -","institution_ids":["https://openalex.org/I901861585"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052578174","display_name":"Scott Dudek","orcid":"https://orcid.org/0000-0003-2904-3824"},"institutions":[{"id":"https://openalex.org/I901861585","display_name":"Vanderbilt University Medical Center","ror":"https://ror.org/05dq2gs74","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210162197","https://openalex.org/I901861585"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Scott M. Dudek","raw_affiliation_strings":["Vanderbilt University Medical Center, Nashville, TN, USA","Vanderbilt University Medical Center, Nashville, TN, USA -"],"affiliations":[{"raw_affiliation_string":"Vanderbilt University Medical Center, Nashville, TN, USA","institution_ids":["https://openalex.org/I901861585"]},{"raw_affiliation_string":"Vanderbilt University Medical Center, Nashville, TN, USA -","institution_ids":["https://openalex.org/I901861585"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086941531","display_name":"Eric Torstenson","orcid":null},"institutions":[{"id":"https://openalex.org/I901861585","display_name":"Vanderbilt University Medical Center","ror":"https://ror.org/05dq2gs74","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210162197","https://openalex.org/I901861585"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eric C. Torstenson","raw_affiliation_strings":["Vanderbilt University Medical Center, Nashville, TN, USA","Vanderbilt University Medical Center, Nashville, TN, USA -"],"affiliations":[{"raw_affiliation_string":"Vanderbilt University Medical Center, Nashville, TN, USA","institution_ids":["https://openalex.org/I901861585"]},{"raw_affiliation_string":"Vanderbilt University Medical Center, Nashville, TN, USA -","institution_ids":["https://openalex.org/I901861585"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068228499","display_name":"Stephen Turner","orcid":"https://orcid.org/0000-0001-9140-9028"},"institutions":[{"id":"https://openalex.org/I901861585","display_name":"Vanderbilt University Medical Center","ror":"https://ror.org/05dq2gs74","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210162197","https://openalex.org/I901861585"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Stephen D. Turner","raw_affiliation_strings":["Vanderbilt University Medical Center, Nashville, TN, USA","Vanderbilt University Medical Center, Nashville, TN, USA -"],"affiliations":[{"raw_affiliation_string":"Vanderbilt University Medical Center, Nashville, TN, USA","institution_ids":["https://openalex.org/I901861585"]},{"raw_affiliation_string":"Vanderbilt University Medical Center, Nashville, TN, USA -","institution_ids":["https://openalex.org/I901861585"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5081769614","display_name":"Marylyn D. Ritchie","orcid":"https://orcid.org/0000-0002-1208-1720"},"institutions":[{"id":"https://openalex.org/I901861585","display_name":"Vanderbilt University Medical Center","ror":"https://ror.org/05dq2gs74","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210162197","https://openalex.org/I901861585"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Marylyn D. Ritchie","raw_affiliation_strings":["Vanderbilt University Medical Center, Nashville, TN, USA","Vanderbilt University Medical Center, Nashville, TN, USA -"],"affiliations":[{"raw_affiliation_string":"Vanderbilt University Medical Center, Nashville, TN, USA","institution_ids":["https://openalex.org/I901861585"]},{"raw_affiliation_string":"Vanderbilt University Medical Center, Nashville, TN, USA -","institution_ids":["https://openalex.org/I901861585"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5070328286"],"corresponding_institution_ids":["https://openalex.org/I901861585"],"apc_list":null,"apc_paid":null,"fwci":5.4125,"has_fulltext":false,"cited_by_count":18,"citation_normalized_percentile":{"value":0.95356115,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"12","issue":null,"first_page":"203","last_page":"210"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11975","display_name":"Evolutionary Algorithms and Applications","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11975","display_name":"Evolutionary Algorithms and Applications","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9886000156402588,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/initialization","display_name":"Initialization","score":0.6690369248390198},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6529054045677185},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.533962070941925},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.49974822998046875},{"id":"https://openalex.org/keywords/parametric-statistics","display_name":"Parametric statistics","score":0.4974971115589142},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.48430123925209045},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4841195046901703},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.36714088916778564},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1732434332370758},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.11882704496383667}],"concepts":[{"id":"https://openalex.org/C114466953","wikidata":"https://www.wikidata.org/wiki/Q6034165","display_name":"Initialization","level":2,"score":0.6690369248390198},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6529054045677185},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.533962070941925},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.49974822998046875},{"id":"https://openalex.org/C117251300","wikidata":"https://www.wikidata.org/wiki/Q1849855","display_name":"Parametric statistics","level":2,"score":0.4974971115589142},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.48430123925209045},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4841195046901703},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.36714088916778564},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1732434332370758},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.11882704496383667},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1145/1830483.1830519","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1830483.1830519","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 12th annual conference on Genetic and evolutionary computation","raw_type":"proceedings-article"},{"id":"pmid:21152364","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21152364","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genetic and Evolutionary Computation Conference : [proceedings]. Genetic and Evolutionary Computation Conference","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2997651","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2997651","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Genet Evol Comput Conf","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:2997651","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2997651","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Genet Evol Comput Conf","raw_type":"Text"},"sustainable_development_goals":[{"score":0.49000000953674316,"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":19,"referenced_works":["https://openalex.org/W1503370304","https://openalex.org/W1554663460","https://openalex.org/W1565095998","https://openalex.org/W1588537248","https://openalex.org/W1966360257","https://openalex.org/W1993196280","https://openalex.org/W1994050986","https://openalex.org/W2009969871","https://openalex.org/W2033383209","https://openalex.org/W2063575312","https://openalex.org/W2079263039","https://openalex.org/W2104605543","https://openalex.org/W2124509331","https://openalex.org/W2127011380","https://openalex.org/W2127405401","https://openalex.org/W2154572047","https://openalex.org/W2296218809","https://openalex.org/W2796223938","https://openalex.org/W4239638504"],"related_works":["https://openalex.org/W3204184292","https://openalex.org/W3176564347","https://openalex.org/W1985458517","https://openalex.org/W2355833770","https://openalex.org/W3031039437","https://openalex.org/W183202219","https://openalex.org/W3095877357","https://openalex.org/W2072565696","https://openalex.org/W2050451745","https://openalex.org/W2378903222"],"abstract_inverted_index":{"Recent":[0],"advances":[1],"in":[2,25,169],"genotyping":[3],"technology":[4],"have":[5,22,92,183],"led":[6],"to":[7,43,75,95,120,160],"the":[8,29,32,44,51,130,151,180,184],"generation":[9],"of":[10,14,19,28,35,46,55,145],"an":[11,110],"enormous":[12],"quantity":[13],"genetic":[15,33,124,174],"data.":[16],"Traditional":[17],"methods":[18],"statistical":[20],"analysis":[21,47,91],"proved":[23,85],"insufficient":[24],"extracting":[26],"all":[27,81],"information":[30],"about":[31],"components":[34],"common,":[36],"complex":[37],"human":[38],"diseases.":[39],"A":[40],"contributing":[41],"factor":[42],"problem":[45],"is":[48,109],"that":[49,67,113,179,182],"amongst":[50],"small":[52],"main":[53],"effects":[54],"each":[56],"single":[57],"gene":[58],"on":[59,187],"disease":[60,146],"susceptibility,":[61],"there":[62],"are":[63],"non-linear,":[64],"gene-gene":[65],"interactions":[66,122,168],"can":[68],"be":[69,134],"difficult":[70],"for":[71,90,102,166,172],"traditional,":[72],"parametric":[73],"analyses":[74],"detect.":[76],"In":[77,150],"addition,":[78],"exhaustively":[79],"searching":[80],"multi-locus":[82],"combinations":[83,163],"has":[84],"computationally":[86],"impractical.":[87],"Novel":[88],"strategies":[89],"been":[93],"developed":[94],"address":[96],"these":[97],"issues.":[98],"The":[99],"Analysis":[100],"Tool":[101],"Heritable":[103],"and":[104,195],"Environmental":[105],"Network":[106],"Associations":[107],"(ATHENA)":[108],"analytical":[111],"tool":[112],"incorporates":[114],"grammatical":[115],"evolution":[116],"neural":[117],"networks":[118],"(GENN)":[119],"detect":[121],"among":[123],"factors.":[125],"Initial":[126],"parameters":[127],"define":[128],"how":[129,139],"evolutionary":[131],"process":[132],"will":[133],"implemented.":[135],"This":[136],"research":[137],"addresses":[138],"different":[140],"parameter":[141,158],"settings":[142],"affect":[143],"detection":[144,188],"models":[147],"involving":[148],"interactions.":[149],"current":[152],"study,":[153],"we":[154],"iterate":[155],"over":[156],"multiple":[157,173],"values":[159],"determine":[161],"which":[162],"appear":[164],"optimal":[165],"detecting":[167],"simulated":[170],"data":[171],"models.":[175],"Our":[176],"results":[177],"indicate":[178],"factors":[181],"greatest":[185],"influence":[186],"are:":[189],"input":[190],"variable":[191],"encoding,":[192],"population":[193],"size,":[194],"parallel":[196],"computation.":[197]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":3}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2016-06-24T00:00:00"}
