{"id":"https://openalex.org/W1966631994","doi":"https://doi.org/10.1145/1824795.1824796","title":"Protein-to-protein interactions","display_name":"Protein-to-protein interactions","publication_year":2010,"publication_date":"2010-11-01","ids":{"openalex":"https://openalex.org/W1966631994","doi":"https://doi.org/10.1145/1824795.1824796","mag":"1966631994"},"language":"en","primary_location":{"id":"doi:10.1145/1824795.1824796","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1824795.1824796","pdf_url":null,"source":{"id":"https://openalex.org/S157921468","display_name":"ACM Computing Surveys","issn_l":"0360-0300","issn":["0360-0300","1557-7341"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319798","host_organization_name":"Association for Computing Machinery","host_organization_lineage":["https://openalex.org/P4310319798"],"host_organization_lineage_names":["Association for Computing Machinery"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ACM Computing Surveys","raw_type":"journal-article"},"type":"review","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5004845138","display_name":"Mario Cannataro","orcid":"https://orcid.org/0000-0003-1502-2387"},"institutions":[{"id":"https://openalex.org/I36443711","display_name":"Magna Graecia University","ror":"https://ror.org/0530bdk91","country_code":"IT","type":"education","lineage":["https://openalex.org/I36443711"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Mario Cannataro","raw_affiliation_strings":["University Magna Gr\u00e6 cia of Catanzaro, Italy"],"affiliations":[{"raw_affiliation_string":"University Magna Gr\u00e6 cia of Catanzaro, Italy","institution_ids":["https://openalex.org/I36443711"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037399554","display_name":"Pietro Hiram Guzzi","orcid":"https://orcid.org/0000-0001-5542-2997"},"institutions":[{"id":"https://openalex.org/I36443711","display_name":"Magna Graecia University","ror":"https://ror.org/0530bdk91","country_code":"IT","type":"education","lineage":["https://openalex.org/I36443711"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Pietro H. Guzzi","raw_affiliation_strings":["University Magna Gr\u00e6 cia of Catanzaro, Italy"],"affiliations":[{"raw_affiliation_string":"University Magna Gr\u00e6 cia of Catanzaro, Italy","institution_ids":["https://openalex.org/I36443711"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027369094","display_name":"Pierangelo Veltri","orcid":"https://orcid.org/0000-0003-2494-0294"},"institutions":[{"id":"https://openalex.org/I36443711","display_name":"Magna Graecia University","ror":"https://ror.org/0530bdk91","country_code":"IT","type":"education","lineage":["https://openalex.org/I36443711"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Pierangelo Veltri","raw_affiliation_strings":["University Magna Gr\u00e6 cia of Catanzaro, Italy"],"affiliations":[{"raw_affiliation_string":"University Magna Gr\u00e6 cia of Catanzaro, Italy","institution_ids":["https://openalex.org/I36443711"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5004845138"],"corresponding_institution_ids":["https://openalex.org/I36443711"],"apc_list":null,"apc_paid":null,"fwci":20.2758,"has_fulltext":false,"cited_by_count":621,"citation_normalized_percentile":{"value":0.99673869,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":100},"biblio":{"volume":"43","issue":"1","first_page":"1","last_page":"36"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9959999918937683,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9944000244140625,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8623038530349731},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.5967551469802856},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.536370038986206},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.49890613555908203},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.4438183903694153},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.42639249563217163},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.40107691287994385},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.11617186665534973}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8623038530349731},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.5967551469802856},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.536370038986206},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.49890613555908203},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.4438183903694153},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.42639249563217163},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.40107691287994385},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.11617186665534973},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/1824795.1824796","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1824795.1824796","pdf_url":null,"source":{"id":"https://openalex.org/S157921468","display_name":"ACM Computing Surveys","issn_l":"0360-0300","issn":["0360-0300","1557-7341"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319798","host_organization_name":"Association for Computing Machinery","host_organization_lineage":["https://openalex.org/P4310319798"],"host_organization_lineage_names":["Association for Computing Machinery"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ACM Computing Surveys","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":98,"referenced_works":["https://openalex.org/W177280439","https://openalex.org/W1485582261","https://openalex.org/W1498834900","https://openalex.org/W1524662923","https://openalex.org/W1527927437","https://openalex.org/W1589640109","https://openalex.org/W1597403892","https://openalex.org/W1639696487","https://openalex.org/W1644749979","https://openalex.org/W1783384641","https://openalex.org/W1811927564","https://openalex.org/W1877439477","https://openalex.org/W1970360171","https://openalex.org/W1970759948","https://openalex.org/W1982428412","https://openalex.org/W1984209790","https://openalex.org/W1984220047","https://openalex.org/W1989921625","https://openalex.org/W1990065094","https://openalex.org/W1998712492","https://openalex.org/W2000815456","https://openalex.org/W2006933206","https://openalex.org/W2022583501","https://openalex.org/W2022811243","https://openalex.org/W2027439534","https://openalex.org/W2037036397","https://openalex.org/W2049883028","https://openalex.org/W2053248591","https://openalex.org/W2057949133","https://openalex.org/W2065304353","https://openalex.org/W2067571661","https://openalex.org/W2069162648","https://openalex.org/W2079007492","https://openalex.org/W2080922074","https://openalex.org/W2084619201","https://openalex.org/W2085931606","https://openalex.org/W2098045561","https://openalex.org/W2102057828","https://openalex.org/W2104261859","https://openalex.org/W2104670598","https://openalex.org/W2106225544","https://openalex.org/W2110025254","https://openalex.org/W2111786937","https://openalex.org/W2111823238","https://openalex.org/W2113654464","https://openalex.org/W2114507260","https://openalex.org/W2115144946","https://openalex.org/W2116117181","https://openalex.org/W2118446779","https://openalex.org/W2118936326","https://openalex.org/W2121564430","https://openalex.org/W2121773288","https://openalex.org/W2122407999","https://openalex.org/W2123500593","https://openalex.org/W2123643026","https://openalex.org/W2124166542","https://openalex.org/W2125936043","https://openalex.org/W2127874029","https://openalex.org/W2128888818","https://openalex.org/W2129996459","https://openalex.org/W2130687290","https://openalex.org/W2132232959","https://openalex.org/W2133177319","https://openalex.org/W2133312664","https://openalex.org/W2135738422","https://openalex.org/W2136316164","https://openalex.org/W2136850043","https://openalex.org/W2137786672","https://openalex.org/W2138003801","https://openalex.org/W2140635350","https://openalex.org/W2143474538","https://openalex.org/W2143758319","https://openalex.org/W2144014661","https://openalex.org/W2145889895","https://openalex.org/W2148762636","https://openalex.org/W2148853951","https://openalex.org/W2150908245","https://openalex.org/W2152653671","https://openalex.org/W2155254562","https://openalex.org/W2155723007","https://openalex.org/W2158714033","https://openalex.org/W2159675211","https://openalex.org/W2163485494","https://openalex.org/W2164328371","https://openalex.org/W2165054897","https://openalex.org/W2166927282","https://openalex.org/W2167139431","https://openalex.org/W2167222948","https://openalex.org/W2167869241","https://openalex.org/W2168719082","https://openalex.org/W2171081680","https://openalex.org/W3022173737","https://openalex.org/W3143219376","https://openalex.org/W4230903726","https://openalex.org/W4236956086","https://openalex.org/W4241669766","https://openalex.org/W4246598646","https://openalex.org/W6793127252"],"related_works":["https://openalex.org/W2062195135","https://openalex.org/W2795079307","https://openalex.org/W2793058541","https://openalex.org/W3118638206","https://openalex.org/W1983629434","https://openalex.org/W4324271173","https://openalex.org/W1967645776","https://openalex.org/W2352227742","https://openalex.org/W4390679071","https://openalex.org/W1480923359"],"abstract_inverted_index":{"Studying":[0],"proteins":[1,127,141],"and":[2,53,64,78,88,120,160,180,188,193,209],"their":[3],"structures":[4],"has":[5,24],"an":[6],"important":[7,16],"role":[8],"for":[9,61,98,108,191],"understanding":[10],"protein":[11],"functionalities.":[12],"Recently,":[13],"due":[14],"to":[15,27],"results":[17],"obtained":[18,71,144],"with":[19],"proteomics,":[20],"a":[21],"great":[22],"interest":[23],"been":[25],"given":[26],"interactomics":[28],",":[29],"that":[30],"is,":[31],"the":[32,135,166,174,206],"study":[33],"of":[34],"protein-to-protein":[35,55],"interactions,":[36],"called":[37],"PPI,":[38],"or":[39,139],"more":[40,140],"generally,":[41],"interactions":[42,56,116,125,136],"among":[43,126],"macromolecules,":[44],"particularly":[45],"within":[46],"cells.":[47],"Interactomics":[48],"means":[49],"studying,":[50],"modeling,":[51,157],"storing,":[52,158],"retrieving":[54],"as":[57,59,106,182,184],"well":[58,183],"algorithms":[60,122],"manipulating,":[62],"simulating,":[63],"predicting":[65,134],"interactions.":[66,76],"PPI":[67,101,129,162,168,177,185,195,213],"data":[68,90,113,178],"can":[69,81,95,103,142],"be":[70,82,96,104,143],"from":[72],"biological":[73,124,130],"experiments":[74],"studying":[75],"Modeling":[77],"storing":[79],"PPIs":[80],"realized":[83],"by":[84,145,204],"using":[85],"graph":[86,89,93],"theory":[87],"management,":[91],"thus":[92],"databases":[94],"queried":[97],"further":[99],"experiments.":[100],"graphs":[102],"used":[105],"input":[107],"data-mining":[109],"algorithms,":[110],"where":[111],"raw":[112],"are":[114,197],"binary":[115],"forming":[117],"interaction":[118,147],"graphs,":[119,173],"analysis":[121],"retrieve":[123],"(i.e.,":[128],"meanings).":[131],"For":[132],"instance,":[133],"between":[137],"two":[138],"mining":[146],"networks":[148,196],"stored":[149],"in":[150,199,212],"databases.":[151,186],"In":[152],"this":[153],"article":[154,175,202],"we":[155],"survey":[156],"analyzing,":[159],"manipulating":[161],"data.":[163],"After":[164],"describing":[165],"main":[167,207],"models,":[169],"mostly":[170],"based":[171],"on":[172],"reviews":[176],"representation":[179],"storage,":[181],"Algorithms":[187],"software":[189],"tools":[190],"analyzing":[192],"managing":[194],"discussed":[198],"depth.":[200],"The":[201],"concludes":[203],"discussing":[205],"challenges":[208],"research":[210],"directions":[211],"networks.":[214]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":59},{"year":2020,"cited_by_count":44},{"year":2019,"cited_by_count":43},{"year":2018,"cited_by_count":55},{"year":2017,"cited_by_count":57},{"year":2016,"cited_by_count":63},{"year":2015,"cited_by_count":66},{"year":2014,"cited_by_count":63},{"year":2013,"cited_by_count":87},{"year":2012,"cited_by_count":48}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
