{"id":"https://openalex.org/W2024172383","doi":"https://doi.org/10.1145/1774088.1774424","title":"A cytoscape based framework for efficient sub-graph isomorphic protein-protein interaction motif lookup","display_name":"A cytoscape based framework for efficient sub-graph isomorphic protein-protein interaction motif lookup","publication_year":2010,"publication_date":"2010-03-22","ids":{"openalex":"https://openalex.org/W2024172383","doi":"https://doi.org/10.1145/1774088.1774424","mag":"2024172383"},"language":"en","primary_location":{"id":"doi:10.1145/1774088.1774424","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1774088.1774424","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2010 ACM Symposium on Applied Computing","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5056136571","display_name":"Mohammad Shafkat Amin","orcid":null},"institutions":[{"id":"https://openalex.org/I185443292","display_name":"Wayne State University","ror":"https://ror.org/01070mq45","country_code":"US","type":"education","lineage":["https://openalex.org/I185443292"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mohammad Shafkat Amin","raw_affiliation_strings":["Wayne State University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Wayne State University","institution_ids":["https://openalex.org/I185443292"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027791481","display_name":"Anupam Bhattacharjee","orcid":null},"institutions":[{"id":"https://openalex.org/I185443292","display_name":"Wayne State University","ror":"https://ror.org/01070mq45","country_code":"US","type":"education","lineage":["https://openalex.org/I185443292"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anupam Bhattacharjee","raw_affiliation_strings":["Wayne State University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Wayne State University","institution_ids":["https://openalex.org/I185443292"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5030091324","display_name":"Hasan M. Jamil","orcid":"https://orcid.org/0000-0002-3124-3780"},"institutions":[{"id":"https://openalex.org/I185443292","display_name":"Wayne State University","ror":"https://ror.org/01070mq45","country_code":"US","type":"education","lineage":["https://openalex.org/I185443292"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hasan Jamil","raw_affiliation_strings":["Wayne State University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Wayne State University","institution_ids":["https://openalex.org/I185443292"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I185443292"],"apc_list":null,"apc_paid":null,"fwci":0.1362,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.53468612,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"1572","last_page":"1576"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10064","display_name":"Complex Network Analysis Techniques","score":0.989300012588501,"subfield":{"id":"https://openalex.org/subfields/3109","display_name":"Statistical and Nonlinear Physics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9804999828338623,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interactome","display_name":"Interactome","score":0.8718845844268799},{"id":"https://openalex.org/keywords/plug-in","display_name":"Plug-in","score":0.7374586462974548},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7130498886108398},{"id":"https://openalex.org/keywords/subnetwork","display_name":"Subnetwork","score":0.645243227481842},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.46747350692749023},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.41658732295036316},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.21851253509521484},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.15467551350593567},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.13448166847229004},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09856748580932617}],"concepts":[{"id":"https://openalex.org/C9760119","wikidata":"https://www.wikidata.org/wiki/Q841382","display_name":"Interactome","level":3,"score":0.8718845844268799},{"id":"https://openalex.org/C4924752","wikidata":"https://www.wikidata.org/wiki/Q184148","display_name":"Plug-in","level":2,"score":0.7374586462974548},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7130498886108398},{"id":"https://openalex.org/C2780186347","wikidata":"https://www.wikidata.org/wiki/Q11414","display_name":"Subnetwork","level":2,"score":0.645243227481842},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.46747350692749023},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.41658732295036316},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21851253509521484},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.15467551350593567},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.13448166847229004},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09856748580932617},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/1774088.1774424","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1774088.1774424","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2010 ACM Symposium on Applied Computing","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/12","display_name":"Responsible consumption and production","score":0.4699999988079071}],"awards":[{"id":"https://openalex.org/G4013050433","display_name":null,"funder_award_id":"CNS 0521454IIS 0612203","funder_id":"https://openalex.org/F4320337388","funder_display_name":"Division of Computer and Network Systems"},{"id":"https://openalex.org/G8528476289","display_name":null,"funder_award_id":"CNS 0521454IIS 0612203","funder_id":"https://openalex.org/F4320337389","funder_display_name":"Division of Information and Intelligent Systems"}],"funders":[{"id":"https://openalex.org/F4320337388","display_name":"Division of Computer and Network Systems","ror":"https://ror.org/02rdzmk74"},{"id":"https://openalex.org/F4320337389","display_name":"Division of Information and Intelligent Systems","ror":"https://ror.org/053a2cp42"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":20,"referenced_works":["https://openalex.org/W1978920477","https://openalex.org/W2011039300","https://openalex.org/W2011426324","https://openalex.org/W2039632890","https://openalex.org/W2048495437","https://openalex.org/W2090766471","https://openalex.org/W2102057828","https://openalex.org/W2112262143","https://openalex.org/W2126359798","https://openalex.org/W2140840007","https://openalex.org/W2141297641","https://openalex.org/W2143195194","https://openalex.org/W2143387021","https://openalex.org/W2144636447","https://openalex.org/W2144885342","https://openalex.org/W2147405597","https://openalex.org/W2148606196","https://openalex.org/W2157729588","https://openalex.org/W2159675211","https://openalex.org/W3103786587"],"related_works":["https://openalex.org/W4292634579","https://openalex.org/W2060724872","https://openalex.org/W2082094785","https://openalex.org/W2202198356","https://openalex.org/W3032808086","https://openalex.org/W2056125010","https://openalex.org/W3005984791","https://openalex.org/W2169777166","https://openalex.org/W2007507741","https://openalex.org/W2076372398"],"abstract_inverted_index":{"Study":[0],"of":[1,23,30,46,75,146],"interactomes":[2,38,52,96],"requires":[3],"assembling":[4],"complex":[5],"tools,":[6],"ontologies":[7],"and":[8,13,19,39,90,101,115,132],"online":[9],"interaction":[10],"network":[11],"databases":[12,142],"so":[14,54],"on":[15,98],"to":[16,65,88,128,160,167],"validate":[17],"hypotheses":[18],"gain":[20],"insight.":[21],"One":[22],"the":[24,28,42,120,129,135,144,156],"major":[25],"bottlenecks":[26],"is":[27],"discovery":[29],"similar":[31,127],"or":[32,48,72,139],"isomorphic":[33,92,103],"subgraphs":[34],"in":[35,94,108],"very":[36],"large":[37,55,95],"cross":[40,133],"referencing":[41],"relationships":[43],"a":[44,85,99,116],"set":[45],"proteins":[47],"genes":[49],"share.":[50],"These":[51],"are":[53,63],"that":[56],"most":[57],"traditional":[58],"subgraph":[59,104],"isomorphism":[60],"computation":[61,105],"tools":[62],"unable":[64],"handle":[66],"efficiently":[67,123],"as":[68,73,78,152],"stand":[69],"alone":[70],"tool,":[71],"part":[74],"systems":[76],"such":[77,151],"R.":[79],"In":[80],"this":[81],"paper,":[82],"we":[83],"present":[84],"Cytoscape":[86,149],"plugin":[87,121],"compute":[89,124],"discover":[91],"subnetworks":[93,126],"based":[97],"novel":[100],"efficient":[102],"method":[106],"developed":[107],"our":[109],"laboratory.":[110],"Given":[111],"an":[112],"input":[113],"interactome":[114,125,141],"given":[117],"query":[118,130],"subnetwork,":[119],"can":[122],"network,":[131],"reference":[134],"results":[136],"from":[137],"GO":[138],"other":[140,147],"with":[143,158],"aid":[145],"available":[148],"plugins":[150],"BinGO.":[153],"We":[154],"describe":[155],"tool":[157],"respect":[159],"real":[161],"life":[162],"applications":[163],"Biologists":[164],"may":[165],"want":[166],"contemplate.":[168]},"counts_by_year":[{"year":2014,"cited_by_count":1}],"updated_date":"2026-06-26T08:34:08.712188","created_date":"2025-10-10T00:00:00"}
