{"id":"https://openalex.org/W2161172731","doi":"https://doi.org/10.1145/1774088.1774420","title":"PROM-OOGLE","display_name":"PROM-OOGLE","publication_year":2010,"publication_date":"2010-03-22","ids":{"openalex":"https://openalex.org/W2161172731","doi":"https://doi.org/10.1145/1774088.1774420","mag":"2161172731"},"language":"en","primary_location":{"id":"doi:10.1145/1774088.1774420","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1774088.1774420","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2010 ACM Symposium on Applied Computing","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5113771497","display_name":"Dean Cheng","orcid":null},"institutions":[{"id":"https://openalex.org/I154425047","display_name":"University of Alberta","ror":"https://ror.org/0160cpw27","country_code":"CA","type":"education","lineage":["https://openalex.org/I154425047"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Dean Cheng","raw_affiliation_strings":["University of Alberta, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Alberta, Canada","institution_ids":["https://openalex.org/I154425047"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108489781","display_name":"John Sheldon","orcid":null},"institutions":[{"id":"https://openalex.org/I154425047","display_name":"University of Alberta","ror":"https://ror.org/0160cpw27","country_code":"CA","type":"education","lineage":["https://openalex.org/I154425047"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"John Sheldon","raw_affiliation_strings":["University of Alberta, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Alberta, Canada","institution_ids":["https://openalex.org/I154425047"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026845136","display_name":"Marcelo Marcet\u2010Palacios","orcid":"https://orcid.org/0000-0002-4048-4658"},"institutions":[{"id":"https://openalex.org/I154425047","display_name":"University of Alberta","ror":"https://ror.org/0160cpw27","country_code":"CA","type":"education","lineage":["https://openalex.org/I154425047"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Marcelo Marcet-Palacios","raw_affiliation_strings":["University of Alberta, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Alberta, Canada","institution_ids":["https://openalex.org/I154425047"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5053745515","display_name":"Osmar R. Zai\u034f\u0308ane","orcid":"https://orcid.org/0000-0002-0060-5988"},"institutions":[{"id":"https://openalex.org/I154425047","display_name":"University of Alberta","ror":"https://ror.org/0160cpw27","country_code":"CA","type":"education","lineage":["https://openalex.org/I154425047"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Osmar R. Za\u00efane","raw_affiliation_strings":["University of Alberta, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Alberta, Canada","institution_ids":["https://openalex.org/I154425047"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.14484697,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1547","last_page":"1551"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9927999973297119,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9921000003814697,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5768678784370422},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.5474380850791931},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.5181626081466675},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.49304887652397156},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4863782227039337},{"id":"https://openalex.org/keywords/promoter","display_name":"Promoter","score":0.44667714834213257},{"id":"https://openalex.org/keywords/biological-database","display_name":"Biological database","score":0.4297892451286316},{"id":"https://openalex.org/keywords/focus","display_name":"Focus (optics)","score":0.4192241430282593},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.37497174739837646},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.30227482318878174},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.2253521978855133},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1514264941215515},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.1469936966896057},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.12112200260162354}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5768678784370422},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.5474380850791931},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.5181626081466675},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.49304887652397156},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4863782227039337},{"id":"https://openalex.org/C101762097","wikidata":"https://www.wikidata.org/wiki/Q224093","display_name":"Promoter","level":4,"score":0.44667714834213257},{"id":"https://openalex.org/C20901353","wikidata":"https://www.wikidata.org/wiki/Q4117139","display_name":"Biological database","level":2,"score":0.4297892451286316},{"id":"https://openalex.org/C192209626","wikidata":"https://www.wikidata.org/wiki/Q190909","display_name":"Focus (optics)","level":2,"score":0.4192241430282593},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.37497174739837646},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.30227482318878174},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2253521978855133},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1514264941215515},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.1469936966896057},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12112200260162354},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.0},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/1774088.1774420","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1774088.1774420","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2010 ACM Symposium on Applied Computing","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.44999998807907104}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":7,"referenced_works":["https://openalex.org/W1566012138","https://openalex.org/W2027448315","https://openalex.org/W2047214755","https://openalex.org/W2048582046","https://openalex.org/W2096525273","https://openalex.org/W2151124162","https://openalex.org/W2158637841"],"related_works":["https://openalex.org/W1969771092","https://openalex.org/W2795723184","https://openalex.org/W2025529750","https://openalex.org/W2891858816","https://openalex.org/W184057646","https://openalex.org/W2042874675","https://openalex.org/W129398428","https://openalex.org/W3212414177","https://openalex.org/W2007418658","https://openalex.org/W1967718992"],"abstract_inverted_index":{"The":[0],"vast":[1],"number":[2],"of":[3,22,87,99,107,127],"on-line":[4],"biological":[5],"and":[6,24,36,89,133],"medical":[7,56],"databases":[8],"available":[9,26,43],"can":[10,27],"be":[11,28],"a":[12,65,70,78,84,131],"great":[13],"resource":[14],"for":[15,30,64,80],"biomedical":[16,32],"researchers.":[17],"However,":[18],"the":[19,42,103,125],"different":[20,112],"types":[21],"data":[23,73],"interfaces":[25],"overwhelming":[29],"many":[31],"researchers":[33,60,81,115],"to":[34,58,82,116,136],"learn":[35],"make":[37],"effective":[38],"use":[39],"of.":[40],"Moreover,":[41],"resources":[44],"lack":[45],"needed":[46],"integration.":[47],"Here":[48],"we":[49],"focus":[50],"on":[51,130],"an":[52],"important":[53],"task":[54],"in":[55,94],"research:":[57],"provide":[59],"with":[61],"promoter":[62,92,132],"analysis":[63],"given":[66],"gene.":[67],"Prom-oogle":[68],"is":[69,105],"web":[71],"based":[72],"mining":[74],"tool":[75,123],"that":[76],"provides":[77],"means":[79],"take":[83],"gene":[85],"name":[86],"interest":[88],"obtain":[90],"its":[91],"sequence":[93],"return":[95],"after":[96],"automatic":[97],"integration":[98],"text":[100],"databases.":[101],"Additionally,":[102],"program":[104],"capable":[106],"returning":[108],"multiple":[109],"promoters":[110,119],"from":[111],"genes":[113],"allowing":[114],"study":[117],"how":[118],"regulate":[120],"genes.":[121],"This":[122],"facilitates":[124],"process":[126],"acquiring":[128],"information":[129],"may":[134],"lead":[135],"interesting":[137],"discoveries.":[138]},"counts_by_year":[],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2016-06-24T00:00:00"}
