{"id":"https://openalex.org/W2022858952","doi":"https://doi.org/10.1145/1774088.1774417","title":"Advanced querying interface for biochemical network databases","display_name":"Advanced querying interface for biochemical network databases","publication_year":2010,"publication_date":"2010-03-22","ids":{"openalex":"https://openalex.org/W2022858952","doi":"https://doi.org/10.1145/1774088.1774417","mag":"2022858952"},"language":"en","primary_location":{"id":"doi:10.1145/1774088.1774417","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1774088.1774417","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2010 ACM Symposium on Applied Computing","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5039751684","display_name":"Brendan Elliott","orcid":null},"institutions":[{"id":"https://openalex.org/I58956616","display_name":"Case Western Reserve University","ror":"https://ror.org/051fd9666","country_code":"US","type":"education","lineage":["https://openalex.org/I58956616"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Brendan Elliott","raw_affiliation_strings":["Case Western Reserve University, Cleveland, OH"],"affiliations":[{"raw_affiliation_string":"Case Western Reserve University, Cleveland, OH","institution_ids":["https://openalex.org/I58956616"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045794660","display_name":"Stephen Mayes","orcid":null},"institutions":[{"id":"https://openalex.org/I58956616","display_name":"Case Western Reserve University","ror":"https://ror.org/051fd9666","country_code":"US","type":"education","lineage":["https://openalex.org/I58956616"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Stephen Mayes","raw_affiliation_strings":["Case Western Reserve University, Cleveland, OH"],"affiliations":[{"raw_affiliation_string":"Case Western Reserve University, Cleveland, OH","institution_ids":["https://openalex.org/I58956616"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035836413","display_name":"Ali Cakmak","orcid":"https://orcid.org/0000-0002-1382-6130"},"institutions":[{"id":"https://openalex.org/I58956616","display_name":"Case Western Reserve University","ror":"https://ror.org/051fd9666","country_code":"US","type":"education","lineage":["https://openalex.org/I58956616"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ali Cakmak","raw_affiliation_strings":["Case Western Reserve University, Cleveland, OH"],"affiliations":[{"raw_affiliation_string":"Case Western Reserve University, Cleveland, OH","institution_ids":["https://openalex.org/I58956616"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016412404","display_name":"G\u00fcltekin \u00d6zsoyo\u011flu","orcid":null},"institutions":[{"id":"https://openalex.org/I58956616","display_name":"Case Western Reserve University","ror":"https://ror.org/051fd9666","country_code":"US","type":"education","lineage":["https://openalex.org/I58956616"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gultekin Ozsoyoglu","raw_affiliation_strings":["Case Western Reserve University, Cleveland, OH"],"affiliations":[{"raw_affiliation_string":"Case Western Reserve University, Cleveland, OH","institution_ids":["https://openalex.org/I58956616"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5013424429","display_name":"Z. Meral \u00d6zsoyo\u011flu","orcid":null},"institutions":[{"id":"https://openalex.org/I58956616","display_name":"Case Western Reserve University","ror":"https://ror.org/051fd9666","country_code":"US","type":"education","lineage":["https://openalex.org/I58956616"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Z. Meral Ozsoyoglu","raw_affiliation_strings":["Case Western Reserve University, Cleveland, OH"],"affiliations":[{"raw_affiliation_string":"Case Western Reserve University, Cleveland, OH","institution_ids":["https://openalex.org/I58956616"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5039751684"],"corresponding_institution_ids":["https://openalex.org/I58956616"],"apc_list":null,"apc_paid":null,"fwci":0.2643,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.57615963,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"1526","last_page":"1533"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9854999780654907,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8597549200057983},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.7072759866714478},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.514474630355835},{"id":"https://openalex.org/keywords/user-interface","display_name":"User interface","score":0.514460563659668},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5115974545478821},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.48638585209846497},{"id":"https://openalex.org/keywords/class","display_name":"Class (philosophy)","score":0.46984022855758667},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.36447444558143616},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.14336645603179932},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.10572010278701782}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8597549200057983},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.7072759866714478},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.514474630355835},{"id":"https://openalex.org/C89505385","wikidata":"https://www.wikidata.org/wiki/Q47146","display_name":"User interface","level":2,"score":0.514460563659668},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5115974545478821},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.48638585209846497},{"id":"https://openalex.org/C2777212361","wikidata":"https://www.wikidata.org/wiki/Q5127848","display_name":"Class (philosophy)","level":2,"score":0.46984022855758667},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.36447444558143616},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.14336645603179932},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.10572010278701782},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/1774088.1774417","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1774088.1774417","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2010 ACM Symposium on Applied Computing","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5108013866","display_name":null,"funder_award_id":"DBI-0849956DBI-0743705CRI-0551603CCF-0820217","funder_id":"https://openalex.org/F4320337388","funder_display_name":"Division of Computer and Network Systems"},{"id":"https://openalex.org/G8400888021","display_name":null,"funder_award_id":"DBI-0849956DBI-0743705CRI-0551603CCF-0820217","funder_id":"https://openalex.org/F4320337398","funder_display_name":"Division of Biological Infrastructure"},{"id":"https://openalex.org/G8539076875","display_name":null,"funder_award_id":"DBI-0849956DBI-0743705CRI-0551603CCF-0820217","funder_id":"https://openalex.org/F4320337387","funder_display_name":"Division of Computing and Communication Foundations"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320337387","display_name":"Division of Computing and Communication Foundations","ror":"https://ror.org/01mng8331"},{"id":"https://openalex.org/F4320337388","display_name":"Division of Computer and Network Systems","ror":"https://ror.org/02rdzmk74"},{"id":"https://openalex.org/F4320337398","display_name":"Division of Biological Infrastructure","ror":"https://ror.org/04qn9mx93"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":17,"referenced_works":["https://openalex.org/W1495410951","https://openalex.org/W1555033082","https://openalex.org/W1589216124","https://openalex.org/W2047496194","https://openalex.org/W2096144498","https://openalex.org/W2103219113","https://openalex.org/W2103599442","https://openalex.org/W2104619491","https://openalex.org/W2126434857","https://openalex.org/W2133319394","https://openalex.org/W2152776677","https://openalex.org/W2155967165","https://openalex.org/W2159675211","https://openalex.org/W2165191787","https://openalex.org/W2165674132","https://openalex.org/W2170497814","https://openalex.org/W4298203020"],"related_works":["https://openalex.org/W2378005410","https://openalex.org/W2003932708","https://openalex.org/W2170435352","https://openalex.org/W1967424056","https://openalex.org/W2284877871","https://openalex.org/W2048876619","https://openalex.org/W2138102289","https://openalex.org/W2354429830","https://openalex.org/W1649706580","https://openalex.org/W3195608031"],"abstract_inverted_index":{"Querying":[0],"biochemical":[1],"networks":[2],"in":[3],"flexible":[4],"ways":[5],"over":[6],"the":[7,35],"web":[8,51],"is":[9,57,72],"important":[10],"to":[11,80],"facilitate":[12],"ongoing":[13],"biological":[14,25,64],"research.":[15],"In":[16],"this":[17],"paper,":[18],"we":[19],"present":[20],"a":[21,38,50,78],"querying":[22],"interface":[23,32,71],"for":[24,34],"networks,":[26],"more":[27],"specifically,":[28],"metabolic":[29,86],"networks.":[30],"The":[31,53,70],"allows":[33],"specification":[36,55],"of":[37,41,76,91],"large":[39],"class":[40],"containment,":[42],"path,":[43],"and":[44,66,84],"neighborhood":[45],"queries":[46],"with":[47],"ease":[48],"from":[49],"browser.":[52],"query":[54],"process":[56],"user-friendly,":[58],"employs":[59],"hierarchically":[60],"arranged":[61],"relationships":[62],"among":[63],"entities,":[65],"uses":[67],"autocomplete":[68],"features.":[69],"provided":[73],"as":[74],"part":[75],"PathCase,":[77],"system":[79],"store,":[81],"query,":[82],"visualize":[83],"analyze":[85],"pathways":[87],"at":[88],"different":[89],"levels":[90],"detail.":[92]},"counts_by_year":[{"year":2012,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
