{"id":"https://openalex.org/W4245744705","doi":"https://doi.org/10.1145/1654059.1654126","title":"Millisecond-scale molecular dynamics simulations on Anton","display_name":"Millisecond-scale molecular dynamics simulations on Anton","publication_year":2009,"publication_date":"2009-11-14","ids":{"openalex":"https://openalex.org/W4245744705","doi":"https://doi.org/10.1145/1654059.1654126"},"language":"en","primary_location":{"id":"doi:10.1145/1654059.1654126","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1654059.1654126","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Conference on High Performance Computing Networking, Storage and Analysis","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5074305095","display_name":"David E. Shaw","orcid":"https://orcid.org/0000-0001-8265-5761"},"institutions":[{"id":"https://openalex.org/I2799548008","display_name":"D. E. Shaw Research","ror":"https://ror.org/02s04h872","country_code":"US","type":"company","lineage":["https://openalex.org/I2799548008"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"David E. Shaw","raw_affiliation_strings":["D. E. Shaw Research, New York, NY"],"affiliations":[{"raw_affiliation_string":"D. E. Shaw Research, New York, NY","institution_ids":["https://openalex.org/I2799548008"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061322136","display_name":"Ron O. Dror","orcid":"https://orcid.org/0000-0002-6418-2793"},"institutions":[{"id":"https://openalex.org/I2799548008","display_name":"D. E. Shaw Research","ror":"https://ror.org/02s04h872","country_code":"US","type":"company","lineage":["https://openalex.org/I2799548008"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ron O. Dror","raw_affiliation_strings":["D. E. Shaw Research, New York, NY"],"affiliations":[{"raw_affiliation_string":"D. E. Shaw Research, New York, NY","institution_ids":["https://openalex.org/I2799548008"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030397130","display_name":"John K. Salmon","orcid":null},"institutions":[{"id":"https://openalex.org/I2799548008","display_name":"D. E. Shaw Research","ror":"https://ror.org/02s04h872","country_code":"US","type":"company","lineage":["https://openalex.org/I2799548008"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"John K. Salmon","raw_affiliation_strings":["D. E. Shaw Research, New York, NY"],"affiliations":[{"raw_affiliation_string":"D. E. Shaw Research, New York, NY","institution_ids":["https://openalex.org/I2799548008"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112225904","display_name":"J.P. Grossman","orcid":null},"institutions":[{"id":"https://openalex.org/I2799548008","display_name":"D. E. Shaw Research","ror":"https://ror.org/02s04h872","country_code":"US","type":"company","lineage":["https://openalex.org/I2799548008"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"J. P. Grossman","raw_affiliation_strings":["D. E. Shaw Research, New York, NY"],"affiliations":[{"raw_affiliation_string":"D. E. Shaw Research, New York, NY","institution_ids":["https://openalex.org/I2799548008"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051904275","display_name":"Kenneth MacKenzie","orcid":null},"institutions":[{"id":"https://openalex.org/I2799548008","display_name":"D. E. Shaw Research","ror":"https://ror.org/02s04h872","country_code":"US","type":"company","lineage":["https://openalex.org/I2799548008"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kenneth M. Mackenzie","raw_affiliation_strings":["D. E. Shaw Research, New York, NY"],"affiliations":[{"raw_affiliation_string":"D. E. Shaw Research, New York, NY","institution_ids":["https://openalex.org/I2799548008"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084619335","display_name":"Joseph A. Bank","orcid":null},"institutions":[{"id":"https://openalex.org/I2799548008","display_name":"D. E. Shaw Research","ror":"https://ror.org/02s04h872","country_code":"US","type":"company","lineage":["https://openalex.org/I2799548008"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joseph A. Bank","raw_affiliation_strings":["D. E. Shaw Research, New York, NY"],"affiliations":[{"raw_affiliation_string":"D. E. Shaw Research, New York, NY","institution_ids":["https://openalex.org/I2799548008"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035427716","display_name":"Cliff Young","orcid":"https://orcid.org/0000-0003-2172-1651"},"institutions":[{"id":"https://openalex.org/I2799548008","display_name":"D. E. Shaw Research","ror":"https://ror.org/02s04h872","country_code":"US","type":"company","lineage":["https://openalex.org/I2799548008"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Cliff Young","raw_affiliation_strings":["D. E. Shaw Research, New York, NY"],"affiliations":[{"raw_affiliation_string":"D. E. Shaw Research, New York, NY","institution_ids":["https://openalex.org/I2799548008"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065367101","display_name":"Martin M. Deneroff","orcid":null},"institutions":[{"id":"https://openalex.org/I2799548008","display_name":"D. E. Shaw Research","ror":"https://ror.org/02s04h872","country_code":"US","type":"company","lineage":["https://openalex.org/I2799548008"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Martin M. Deneroff","raw_affiliation_strings":["D. E. Shaw Research, New York, NY"],"affiliations":[{"raw_affiliation_string":"D. E. Shaw Research, New York, NY","institution_ids":["https://openalex.org/I2799548008"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007783736","display_name":"Brannon Batson","orcid":null},"institutions":[{"id":"https://openalex.org/I2799548008","display_name":"D. E. Shaw Research","ror":"https://ror.org/02s04h872","country_code":"US","type":"company","lineage":["https://openalex.org/I2799548008"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Brannon Batson","raw_affiliation_strings":["D. E. Shaw Research, New York, NY"],"affiliations":[{"raw_affiliation_string":"D. E. Shaw Research, New York, NY","institution_ids":["https://openalex.org/I2799548008"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080068277","display_name":"K. J. Bowers","orcid":null},"institutions":[{"id":"https://openalex.org/I2799548008","display_name":"D. E. Shaw Research","ror":"https://ror.org/02s04h872","country_code":"US","type":"company","lineage":["https://openalex.org/I2799548008"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kevin J. Bowers","raw_affiliation_strings":["D. E. Shaw Research, New York, NY"],"affiliations":[{"raw_affiliation_string":"D. E. Shaw Research, New York, NY","institution_ids":["https://openalex.org/I2799548008"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039834058","display_name":"Edmond Chow","orcid":"https://orcid.org/0000-0003-0474-3752"},"institutions":[{"id":"https://openalex.org/I2799548008","display_name":"D. E. Shaw Research","ror":"https://ror.org/02s04h872","country_code":"US","type":"company","lineage":["https://openalex.org/I2799548008"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Edmond Chow","raw_affiliation_strings":["D. E. Shaw Research, New York, NY"],"affiliations":[{"raw_affiliation_string":"D. E. Shaw Research, New York, NY","institution_ids":["https://openalex.org/I2799548008"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013817723","display_name":"Michael P. Eastwood","orcid":null},"institutions":[{"id":"https://openalex.org/I2799548008","display_name":"D. E. Shaw Research","ror":"https://ror.org/02s04h872","country_code":"US","type":"company","lineage":["https://openalex.org/I2799548008"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael P. Eastwood","raw_affiliation_strings":["D. E. Shaw Research, New York, NY"],"affiliations":[{"raw_affiliation_string":"D. E. Shaw Research, New York, NY","institution_ids":["https://openalex.org/I2799548008"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080522524","display_name":"Douglas J. Ierardi","orcid":null},"institutions":[{"id":"https://openalex.org/I2799548008","display_name":"D. E. Shaw Research","ror":"https://ror.org/02s04h872","country_code":"US","type":"company","lineage":["https://openalex.org/I2799548008"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Douglas J. Ierardi","raw_affiliation_strings":["D. E. Shaw Research, New York, NY"],"affiliations":[{"raw_affiliation_string":"D. E. Shaw Research, New York, NY","institution_ids":["https://openalex.org/I2799548008"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000327032","display_name":"John L. Klepeis","orcid":"https://orcid.org/0000-0001-5180-3696"},"institutions":[{"id":"https://openalex.org/I2799548008","display_name":"D. E. Shaw Research","ror":"https://ror.org/02s04h872","country_code":"US","type":"company","lineage":["https://openalex.org/I2799548008"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"John L. Klepeis","raw_affiliation_strings":["D. E. Shaw Research, New York, NY"],"affiliations":[{"raw_affiliation_string":"D. E. Shaw Research, New York, NY","institution_ids":["https://openalex.org/I2799548008"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048518181","display_name":"Jeffrey S. Kuskin","orcid":null},"institutions":[{"id":"https://openalex.org/I2799548008","display_name":"D. E. Shaw Research","ror":"https://ror.org/02s04h872","country_code":"US","type":"company","lineage":["https://openalex.org/I2799548008"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jeffrey S. Kuskin","raw_affiliation_strings":["D. E. Shaw Research, New York, NY"],"affiliations":[{"raw_affiliation_string":"D. E. Shaw Research, New York, NY","institution_ids":["https://openalex.org/I2799548008"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026218309","display_name":"Richard H. Larson","orcid":null},"institutions":[{"id":"https://openalex.org/I2799548008","display_name":"D. E. Shaw Research","ror":"https://ror.org/02s04h872","country_code":"US","type":"company","lineage":["https://openalex.org/I2799548008"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Richard H. Larson","raw_affiliation_strings":["D. E. Shaw Research, New York, NY"],"affiliations":[{"raw_affiliation_string":"D. E. Shaw Research, New York, NY","institution_ids":["https://openalex.org/I2799548008"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019872729","display_name":"Kresten Lindorff\u2010Larsen","orcid":"https://orcid.org/0000-0002-4750-6039"},"institutions":[{"id":"https://openalex.org/I2799548008","display_name":"D. E. Shaw Research","ror":"https://ror.org/02s04h872","country_code":"US","type":"company","lineage":["https://openalex.org/I2799548008"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kresten Lindorff-Larsen","raw_affiliation_strings":["D. E. Shaw Research, New York, NY"],"affiliations":[{"raw_affiliation_string":"D. E. Shaw Research, New York, NY","institution_ids":["https://openalex.org/I2799548008"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064536779","display_name":"Paul Maragakis","orcid":null},"institutions":[{"id":"https://openalex.org/I2799548008","display_name":"D. E. Shaw Research","ror":"https://ror.org/02s04h872","country_code":"US","type":"company","lineage":["https://openalex.org/I2799548008"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Paul Maragakis","raw_affiliation_strings":["D. E. Shaw Research, New York, NY"],"affiliations":[{"raw_affiliation_string":"D. E. Shaw Research, New York, NY","institution_ids":["https://openalex.org/I2799548008"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053526458","display_name":"Mark A. Moraes","orcid":"https://orcid.org/0000-0002-0971-6908"},"institutions":[{"id":"https://openalex.org/I2799548008","display_name":"D. E. Shaw Research","ror":"https://ror.org/02s04h872","country_code":"US","type":"company","lineage":["https://openalex.org/I2799548008"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mark A. Moraes","raw_affiliation_strings":["D. E. Shaw Research, New York, NY"],"affiliations":[{"raw_affiliation_string":"D. E. Shaw Research, New York, NY","institution_ids":["https://openalex.org/I2799548008"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059988639","display_name":"Stefano Piana","orcid":"https://orcid.org/0000-0002-6136-4516"},"institutions":[{"id":"https://openalex.org/I2799548008","display_name":"D. E. Shaw Research","ror":"https://ror.org/02s04h872","country_code":"US","type":"company","lineage":["https://openalex.org/I2799548008"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Stefano Piana","raw_affiliation_strings":["D. E. Shaw Research, New York, NY"],"affiliations":[{"raw_affiliation_string":"D. E. Shaw Research, New York, NY","institution_ids":["https://openalex.org/I2799548008"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062359517","display_name":"Yibing Shan","orcid":"https://orcid.org/0000-0002-3865-8110"},"institutions":[{"id":"https://openalex.org/I2799548008","display_name":"D. E. Shaw Research","ror":"https://ror.org/02s04h872","country_code":"US","type":"company","lineage":["https://openalex.org/I2799548008"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yibing Shan","raw_affiliation_strings":["D. E. Shaw Research, New York, NY"],"affiliations":[{"raw_affiliation_string":"D. E. Shaw Research, New York, NY","institution_ids":["https://openalex.org/I2799548008"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5010571977","display_name":"Brian Towles","orcid":"https://orcid.org/0009-0000-9409-7285"},"institutions":[{"id":"https://openalex.org/I2799548008","display_name":"D. E. Shaw Research","ror":"https://ror.org/02s04h872","country_code":"US","type":"company","lineage":["https://openalex.org/I2799548008"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Brian Towles","raw_affiliation_strings":["D. E. Shaw Research, New York, NY"],"affiliations":[{"raw_affiliation_string":"D. E. Shaw Research, New York, NY","institution_ids":["https://openalex.org/I2799548008"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":22,"corresponding_author_ids":["https://openalex.org/A5074305095"],"corresponding_institution_ids":["https://openalex.org/I2799548008"],"apc_list":null,"apc_paid":null,"fwci":3.3699,"has_fulltext":false,"cited_by_count":298,"citation_normalized_percentile":{"value":0.93021494,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"11"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11247","display_name":"Plant nutrient uptake and metabolism","score":0.9925000071525574,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.989799976348877,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/millisecond","display_name":"Millisecond","score":0.885266125202179},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7176616191864014},{"id":"https://openalex.org/keywords/molecular-dynamics","display_name":"Molecular dynamics","score":0.6934571266174316},{"id":"https://openalex.org/keywords/supercomputer","display_name":"Supercomputer","score":0.6243210434913635},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.5405932664871216},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5041204690933228},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.4563092291355133},{"id":"https://openalex.org/keywords/statistical-physics","display_name":"Statistical physics","score":0.34727466106414795},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.2675483226776123},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.22035768628120422},{"id":"https://openalex.org/keywords/computational-chemistry","display_name":"Computational chemistry","score":0.11700105667114258},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.11544042825698853}],"concepts":[{"id":"https://openalex.org/C60327585","wikidata":"https://www.wikidata.org/wiki/Q723733","display_name":"Millisecond","level":2,"score":0.885266125202179},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7176616191864014},{"id":"https://openalex.org/C59593255","wikidata":"https://www.wikidata.org/wiki/Q901663","display_name":"Molecular dynamics","level":2,"score":0.6934571266174316},{"id":"https://openalex.org/C83283714","wikidata":"https://www.wikidata.org/wiki/Q121117","display_name":"Supercomputer","level":2,"score":0.6243210434913635},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.5405932664871216},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5041204690933228},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.4563092291355133},{"id":"https://openalex.org/C121864883","wikidata":"https://www.wikidata.org/wiki/Q677916","display_name":"Statistical physics","level":1,"score":0.34727466106414795},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.2675483226776123},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.22035768628120422},{"id":"https://openalex.org/C147597530","wikidata":"https://www.wikidata.org/wiki/Q369472","display_name":"Computational chemistry","level":1,"score":0.11700105667114258},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.11544042825698853},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C1276947","wikidata":"https://www.wikidata.org/wiki/Q333","display_name":"Astronomy","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/1654059.1654126","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1654059.1654126","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Conference on High Performance Computing Networking, Storage and Analysis","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":31,"referenced_works":["https://openalex.org/W1672666614","https://openalex.org/W1963890037","https://openalex.org/W1966078827","https://openalex.org/W1969231606","https://openalex.org/W1987284299","https://openalex.org/W2001302355","https://openalex.org/W2014407510","https://openalex.org/W2015672497","https://openalex.org/W2017394797","https://openalex.org/W2018657646","https://openalex.org/W2024726841","https://openalex.org/W2025776864","https://openalex.org/W2035687084","https://openalex.org/W2051150073","https://openalex.org/W2051381895","https://openalex.org/W2058874255","https://openalex.org/W2066989472","https://openalex.org/W2079199763","https://openalex.org/W2080255536","https://openalex.org/W2084800760","https://openalex.org/W2086889049","https://openalex.org/W2094782434","https://openalex.org/W2103815459","https://openalex.org/W2110338379","https://openalex.org/W2117029147","https://openalex.org/W2137007076","https://openalex.org/W2137714390","https://openalex.org/W2144803600","https://openalex.org/W2153228625","https://openalex.org/W2162186524","https://openalex.org/W2170321583"],"related_works":["https://openalex.org/W2384867379","https://openalex.org/W2329539859","https://openalex.org/W3191490922","https://openalex.org/W2227905990","https://openalex.org/W2765823764","https://openalex.org/W1582436825","https://openalex.org/W1996803181","https://openalex.org/W2979588510","https://openalex.org/W2088034942","https://openalex.org/W2149263892"],"abstract_inverted_index":{"Anton":[0,63],"is":[1,64],"a":[2,50,69],"recently":[3],"completed":[4],"special-purpose":[5],"supercomputer":[6],"designed":[7],"for":[8,29,44],"molecular":[9],"dynamics":[10,91],"(MD)":[11],"simulations":[12,67,111],"of":[13,24,35,42,49,54,60,87,89],"biomolecular":[14],"systems.":[15],"The":[16],"machine's":[17],"specialized":[18],"hardware":[19,141],"dramatically":[20],"increases":[21],"the":[22,30,33,47,57,61,85,128],"speed":[23],"MD":[25,110,120],"calculations,":[26],"making":[27],"possible":[28],"first":[31],"time":[32],"simulation":[34],"biological":[36],"molecules":[37],"at":[38,71],"an":[39],"atomic":[40],"level":[41],"detail":[43],"periods":[45],"on":[46,68],"order":[48],"millisecond---about":[51],"two":[52],"orders":[53],"magnitude":[55],"beyond":[56],"previous":[58],"state":[59],"art.":[62],"now":[65],"running":[66],"timescale":[70],"which":[72,131],"many":[73],"critically":[74],"important,":[75],"but":[76],"poorly":[77],"understood":[78],"phenomena":[79],"are":[80],"known":[81],"to":[82,96,142],"occur,":[83],"allowing":[84],"observation":[86],"aspects":[88],"protein":[90],"that":[92],"were":[93],"previously":[94],"inaccessible":[95],"both":[97,118],"computational":[98],"and":[99,122],"experimental":[100,123],"study.":[101],"Here,":[102],"we":[103],"report":[104],"Anton's":[105,138],"performance":[106],"when":[107],"executing":[108],"actual":[109],"whose":[112],"accuracy":[113],"has":[114],"been":[115,135],"validated":[116],"against":[117],"existing":[119],"software":[121],"observations.":[124],"We":[125],"also":[126],"discuss":[127],"manner":[129],"in":[130],"novel":[132],"algorithms":[133],"have":[134],"coordinated":[136],"with":[137],"co-designed,":[139],"application-specific":[140],"achieve":[143],"these":[144],"results.":[145]},"counts_by_year":[{"year":2026,"cited_by_count":8},{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":17},{"year":2022,"cited_by_count":14},{"year":2021,"cited_by_count":23},{"year":2020,"cited_by_count":23},{"year":2019,"cited_by_count":18},{"year":2018,"cited_by_count":26},{"year":2017,"cited_by_count":49},{"year":2016,"cited_by_count":17},{"year":2015,"cited_by_count":18},{"year":2014,"cited_by_count":24},{"year":2013,"cited_by_count":19},{"year":2012,"cited_by_count":10}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
