{"id":"https://openalex.org/W2098622176","doi":"https://doi.org/10.1145/1653662.1653703","title":"Privacy-preserving genomic computation through program specialization","display_name":"Privacy-preserving genomic computation through program specialization","publication_year":2009,"publication_date":"2009-11-09","ids":{"openalex":"https://openalex.org/W2098622176","doi":"https://doi.org/10.1145/1653662.1653703","mag":"2098622176"},"language":"en","primary_location":{"id":"doi:10.1145/1653662.1653703","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1653662.1653703","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 16th ACM conference on Computer and communications security","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100431156","display_name":"Rui Wang","orcid":"https://orcid.org/0000-0001-8495-3631"},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rui Wang","raw_affiliation_strings":["Indiana University Bloomington, Bloomington, IN, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Indiana University Bloomington, Bloomington, IN, USA","institution_ids":["https://openalex.org/I4210119109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114585327","display_name":"XiaoFeng Wang","orcid":"https://orcid.org/0009-0007-7246-3169"},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"XiaoFeng Wang","raw_affiliation_strings":["Indiana University Bloomington, Bloomington, IN, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Indiana University Bloomington, Bloomington, IN, USA","institution_ids":["https://openalex.org/I4210119109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100452308","display_name":"Zhou Li","orcid":"https://orcid.org/0000-0002-9401-1012"},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zhou Li","raw_affiliation_strings":["Indiana University Bloomington, Bloomington, IN, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Indiana University Bloomington, Bloomington, IN, USA","institution_ids":["https://openalex.org/I4210119109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078007096","display_name":"Haixu Tang","orcid":"https://orcid.org/0000-0001-8963-8155"},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Haixu Tang","raw_affiliation_strings":["Indiana University Bloomington, Bloomington, IN, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Indiana University Bloomington, Bloomington, IN, USA","institution_ids":["https://openalex.org/I4210119109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074117167","display_name":"Michael K. Reiter","orcid":"https://orcid.org/0000-0001-7007-8274"},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael K. Reiter","raw_affiliation_strings":["University of North Carolina at Chapel Hill, Chapel Hill, NC, USA","University of North Carolina at Chapel Hill , Chapel Hill, NC, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of North Carolina at Chapel Hill, Chapel Hill, NC, USA","institution_ids":["https://openalex.org/I114027177"]},{"raw_affiliation_string":"University of North Carolina at Chapel Hill , Chapel Hill, NC, USA","institution_ids":["https://openalex.org/I114027177"]}]},{"author_position":"last","author":{"id":null,"display_name":"Zheng Dong","orcid":null},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zheng Dong","raw_affiliation_strings":["Indiana University Bloomington, Bloomington, IN, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Indiana University Bloomington, Bloomington, IN, USA","institution_ids":["https://openalex.org/I4210119109"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":82,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"338","last_page":"347"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10764","display_name":"Privacy-Preserving Technologies in Data","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10764","display_name":"Privacy-Preserving Technologies in Data","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10237","display_name":"Cryptography and Data Security","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9900000095367432,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8400234580039978},{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.5649471879005432},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.4949316382408142},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.48787426948547363},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4757123589515686},{"id":"https://openalex.org/keywords/partition","display_name":"Partition (number theory)","score":0.46092602610588074},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3220710754394531},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.22992470860481262}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8400234580039978},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.5649471879005432},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.4949316382408142},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.48787426948547363},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4757123589515686},{"id":"https://openalex.org/C42812","wikidata":"https://www.wikidata.org/wiki/Q1082910","display_name":"Partition (number theory)","level":2,"score":0.46092602610588074},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3220710754394531},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.22992470860481262},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[],"locations_count":6,"locations":[{"id":"doi:10.1145/1653662.1653703","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1653662.1653703","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 16th ACM conference on Computer and communications security","raw_type":"proceedings-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.158.1425","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.158.1425","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cs.unc.edu/~reiter/papers/2009/CCS2.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.160.8713","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.160.8713","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cs.indiana.edu/l/www/ftp/techreports/TR679.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.183.4690","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.183.4690","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cs.indiana.edu/%7Elizho/pgcomp.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.547.2275","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.547.2275","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.informatics.indiana.edu/xw7/papers/pgcomp.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.959.6119","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.959.6119","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://amnesia.gtisc.gatech.edu/%7Emoyix/CCS_09/docs/p338.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/16","score":0.49000000953674316,"display_name":"Peace, Justice and strong institutions"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":75,"referenced_works":["https://openalex.org/W92576581","https://openalex.org/W178553124","https://openalex.org/W309548903","https://openalex.org/W1488499745","https://openalex.org/W1556604985","https://openalex.org/W1566968514","https://openalex.org/W1603239376","https://openalex.org/W1788063258","https://openalex.org/W1809664600","https://openalex.org/W1921315132","https://openalex.org/W1973312887","https://openalex.org/W1983287532","https://openalex.org/W1994099276","https://openalex.org/W2001638679","https://openalex.org/W2019126169","https://openalex.org/W2025075986","https://openalex.org/W2027471022","https://openalex.org/W2033339460","https://openalex.org/W2037687988","https://openalex.org/W2048423324","https://openalex.org/W2055043387","https://openalex.org/W2057998009","https://openalex.org/W2058401000","https://openalex.org/W2058958439","https://openalex.org/W2062202510","https://openalex.org/W2066669827","https://openalex.org/W2068448872","https://openalex.org/W2072603644","https://openalex.org/W2074231493","https://openalex.org/W2086982662","https://openalex.org/W2087064593","https://openalex.org/W2088492763","https://openalex.org/W2094873755","https://openalex.org/W2101512909","https://openalex.org/W2102970979","https://openalex.org/W2107889007","https://openalex.org/W2108215151","https://openalex.org/W2108437970","https://openalex.org/W2111443557","https://openalex.org/W2112143438","https://openalex.org/W2114423840","https://openalex.org/W2115103164","https://openalex.org/W2121252285","https://openalex.org/W2125062340","https://openalex.org/W2127458553","https://openalex.org/W2127637733","https://openalex.org/W2128016314","https://openalex.org/W2128591967","https://openalex.org/W2134167315","https://openalex.org/W2136114025","https://openalex.org/W2139476818","https://openalex.org/W2146188580","https://openalex.org/W2146919633","https://openalex.org/W2148955694","https://openalex.org/W2149237601","https://openalex.org/W2150375183","https://openalex.org/W2152036980","https://openalex.org/W2152318180","https://openalex.org/W2154564703","https://openalex.org/W2158126684","https://openalex.org/W2158714788","https://openalex.org/W2162022335","https://openalex.org/W2165785801","https://openalex.org/W2166510103","https://openalex.org/W2166971704","https://openalex.org/W2293654645","https://openalex.org/W2341171179","https://openalex.org/W2914982603","https://openalex.org/W3135932689","https://openalex.org/W4205241946","https://openalex.org/W4212829985","https://openalex.org/W4237591687","https://openalex.org/W4238983745","https://openalex.org/W6640159821","https://openalex.org/W6675949863"],"related_works":["https://openalex.org/W4231775656","https://openalex.org/W2046435967","https://openalex.org/W3161249280","https://openalex.org/W2383646825","https://openalex.org/W2267059662","https://openalex.org/W2371018915","https://openalex.org/W2354191502","https://openalex.org/W2364268683","https://openalex.org/W1972225038","https://openalex.org/W2477549100"],"abstract_inverted_index":{"In":[0],"this":[1,29,65],"paper,":[2],"we":[3,67],"present":[4],"a":[5,22,34,69,74,101,110,115,122,129,156,168,175],"new":[6],"approach":[7,32],"to":[8,83,94,113,163],"performing":[9],"important":[10],"classes":[11],"of":[12,37,46,59,97,152,158],"genomic":[13,75,164],"computations":[14,192],"(e.g.,":[15],"search":[16],"for":[17,178],"homologous":[18],"genes)":[19],"that":[20,42,72,108,140,172,184],"makes":[21],"significant":[23],"step":[24],"towards":[25],"privacy":[26],"protection":[27],"in":[28],"domain.":[30],"Our":[31],"leverages":[33],"key":[35],"property":[36],"the":[38,43,78,84,88,91,95,98,131,150],"human":[39],"genome,":[40],"namely":[41],"vast":[44],"majority":[45],"it":[47,60],"is":[48,61,103,133],"shared":[49],"across":[50],"humans":[51],"(and":[52],"hence":[53],"public),":[54],"and":[55,87,121],"consequently":[56],"relatively":[57],"little":[58],"sensitive.":[62],"Based":[63],"on":[64,80,90,118,125,155,193],"observation,":[66],"propose":[68],"privacy-protection":[70],"framework":[71],"partitions":[73],"computation,":[76],"distributing":[77],"part":[79,89],"sensitive":[81,126,143],"data":[82,85,93,120,145],"provider":[86],"pubic":[92],"user":[96],"data.":[99,127],"Such":[100],"partition":[102],"achieved":[104],"through":[105],"program":[106,112,132,139,169,177],"specialization":[107,179],"enables":[109],"biocomputing":[111,195],"perform":[114],"concrete":[116],"execution":[117,124],"public":[119],"symbolic":[123],"As":[128],"result,":[130],"simplified":[134],"into":[135],"an":[136],"efficient":[137],"query":[138],"takes":[141],"only":[142],"genetic":[144],"as":[146],"inputs.":[147],"We":[148,166,181],"prove":[149],"effectiveness":[151],"our":[153,185],"techniques":[154,186],"set":[157],"dynamic":[159],"programming":[160],"algorithms":[161],"fundamental":[162],"computing.":[165],"develop":[167],"transformation":[170],"tool":[171],"automatically":[173],"instruments":[174],"legacy":[176],"operations.":[180],"also":[182],"demonstrate":[183],"can":[187],"greatly":[188],"facilitate":[189],"secure":[190],"multi-party":[191],"large":[194],"problems.":[196]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":2},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":8},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":13},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":11},{"year":2013,"cited_by_count":6},{"year":2012,"cited_by_count":6}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
