{"id":"https://openalex.org/W2169668167","doi":"https://doi.org/10.1145/1651318.1651336","title":"A graph-based approach for biomedical thesaurus expansion","display_name":"A graph-based approach for biomedical thesaurus expansion","publication_year":2009,"publication_date":"2009-11-06","ids":{"openalex":"https://openalex.org/W2169668167","doi":"https://doi.org/10.1145/1651318.1651336","mag":"2169668167"},"language":"en","primary_location":{"id":"doi:10.1145/1651318.1651336","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1651318.1651336","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the third international workshop on Data and text mining in bioinformatics","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5031413346","display_name":"Ikumi Suzuki","orcid":null},"institutions":[{"id":"https://openalex.org/I75917431","display_name":"Nara Institute of Science and Technology","ror":"https://ror.org/05bhada84","country_code":"JP","type":"education","lineage":["https://openalex.org/I75917431"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Ikumi Suzuki","raw_affiliation_strings":["Nara Institute of Science and Technology, Ikoma, Japan"],"affiliations":[{"raw_affiliation_string":"Nara Institute of Science and Technology, Ikoma, Japan","institution_ids":["https://openalex.org/I75917431"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048078824","display_name":"Kazuo Hara","orcid":"https://orcid.org/0000-0002-4699-6136"},"institutions":[{"id":"https://openalex.org/I75917431","display_name":"Nara Institute of Science and Technology","ror":"https://ror.org/05bhada84","country_code":"JP","type":"education","lineage":["https://openalex.org/I75917431"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Kazuo Hara","raw_affiliation_strings":["Nara Institute of Science and Technology, Ikoma, Japan"],"affiliations":[{"raw_affiliation_string":"Nara Institute of Science and Technology, Ikoma, Japan","institution_ids":["https://openalex.org/I75917431"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055086415","display_name":"Masashi Shimbo","orcid":null},"institutions":[{"id":"https://openalex.org/I75917431","display_name":"Nara Institute of Science and Technology","ror":"https://ror.org/05bhada84","country_code":"JP","type":"education","lineage":["https://openalex.org/I75917431"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Masashi Shimbo","raw_affiliation_strings":["Nara Institute of Science and Technology, Ikoma, Japan"],"affiliations":[{"raw_affiliation_string":"Nara Institute of Science and Technology, Ikoma, Japan","institution_ids":["https://openalex.org/I75917431"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5072032804","display_name":"Y\u016bji Matsumoto","orcid":"https://orcid.org/0000-0003-4946-9574"},"institutions":[{"id":"https://openalex.org/I75917431","display_name":"Nara Institute of Science and Technology","ror":"https://ror.org/05bhada84","country_code":"JP","type":"education","lineage":["https://openalex.org/I75917431"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Yuji Matsumoto","raw_affiliation_strings":["Nara Institute of Science and Technology, Ikoma, Japan"],"affiliations":[{"raw_affiliation_string":"Nara Institute of Science and Technology, Ikoma, Japan","institution_ids":["https://openalex.org/I75917431"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5031413346"],"corresponding_institution_ids":["https://openalex.org/I75917431"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.1601901,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"79","last_page":"82"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9945999979972839,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/thesaurus","display_name":"Thesaurus","score":0.7814286947250366},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6937969923019409},{"id":"https://openalex.org/keywords/adjacency-matrix","display_name":"Adjacency matrix","score":0.6585491895675659},{"id":"https://openalex.org/keywords/cosine-similarity","display_name":"Cosine similarity","score":0.6288010478019714},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5531589984893799},{"id":"https://openalex.org/keywords/laplacian-matrix","display_name":"Laplacian matrix","score":0.5457535982131958},{"id":"https://openalex.org/keywords/laplace-operator","display_name":"Laplace operator","score":0.5406962633132935},{"id":"https://openalex.org/keywords/kernel","display_name":"Kernel (algebra)","score":0.4824110269546509},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.4449272155761719},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.4403691291809082},{"id":"https://openalex.org/keywords/property","display_name":"Property (philosophy)","score":0.42370718717575073},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4114013612270355},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.351620614528656},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.25945845246315},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.20120680332183838},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.11677274107933044},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.09213137626647949}],"concepts":[{"id":"https://openalex.org/C2778698081","wikidata":"https://www.wikidata.org/wiki/Q179797","display_name":"Thesaurus","level":2,"score":0.7814286947250366},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6937969923019409},{"id":"https://openalex.org/C180356752","wikidata":"https://www.wikidata.org/wiki/Q727035","display_name":"Adjacency matrix","level":3,"score":0.6585491895675659},{"id":"https://openalex.org/C2780762811","wikidata":"https://www.wikidata.org/wiki/Q1784941","display_name":"Cosine similarity","level":3,"score":0.6288010478019714},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5531589984893799},{"id":"https://openalex.org/C115178988","wikidata":"https://www.wikidata.org/wiki/Q772067","display_name":"Laplacian matrix","level":3,"score":0.5457535982131958},{"id":"https://openalex.org/C165700671","wikidata":"https://www.wikidata.org/wiki/Q203484","display_name":"Laplace operator","level":2,"score":0.5406962633132935},{"id":"https://openalex.org/C74193536","wikidata":"https://www.wikidata.org/wiki/Q574844","display_name":"Kernel (algebra)","level":2,"score":0.4824110269546509},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.4449272155761719},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.4403691291809082},{"id":"https://openalex.org/C189950617","wikidata":"https://www.wikidata.org/wiki/Q937228","display_name":"Property (philosophy)","level":2,"score":0.42370718717575073},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4114013612270355},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.351620614528656},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.25945845246315},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.20120680332183838},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.11677274107933044},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.09213137626647949},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/1651318.1651336","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1651318.1651336","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the third international workshop on Data and text mining in bioinformatics","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":14,"referenced_works":["https://openalex.org/W239387508","https://openalex.org/W1530408181","https://openalex.org/W1561092886","https://openalex.org/W2034291858","https://openalex.org/W2073627450","https://openalex.org/W2079672501","https://openalex.org/W2113367658","https://openalex.org/W2114523070","https://openalex.org/W2142124258","https://openalex.org/W2160510157","https://openalex.org/W2497849059","https://openalex.org/W2920277907","https://openalex.org/W4240407914","https://openalex.org/W6753056052"],"related_works":["https://openalex.org/W2963002212","https://openalex.org/W4205812024","https://openalex.org/W4293871700","https://openalex.org/W1533309322","https://openalex.org/W4295105863","https://openalex.org/W1828315746","https://openalex.org/W4300950998","https://openalex.org/W2030274157","https://openalex.org/W3105737664","https://openalex.org/W2557541666"],"abstract_inverted_index":{"The":[0],"addition":[1],"of":[2,19,28,55,67,121],"new":[3,14,95],"terms":[4,97,126],"to":[5,40,89,100,116,119],"biomedical":[6,96],"thesauri":[7],"is":[8,114],"important":[9],"for":[10,94,131],"keeping":[11],"pace":[12],"with":[13],"research.":[15],"In":[16],"the":[17,26,52,62,77,83,91,101,109],"context":[18],"a":[20,56],"thesaurus":[21,72,125],"expansion":[22,73],"task,":[23],"we":[24,59,128],"investigate":[25],"property":[27,47],"Laplacian":[29,53,78],"diffusion":[30,79],"kernel":[31,80],"matrices":[32],"that":[33,45,58],"depreciate":[34],"pivotal":[35],"vertices":[36],"having":[37],"many":[38],"links":[39],"surrounding":[41],"vertices.":[42],"We":[43],"confirm":[44],"this":[46],"can":[48],"be":[49,117],"seen":[50],"on":[51],"matrix":[54,85],"graph":[57],"construct":[60],"from":[61],"GENIA":[63],"corpus":[64],"(a":[65],"subset":[66],"MEDLINE":[68],"abstracts)":[69],"and":[70,127],"simulate":[71],"by":[74],"employing":[75],"either":[76],"matrix,":[81],"or":[82],"adjacency":[84],"(i.e.,":[86],"cosine":[87,122],"similarity),":[88],"determine":[90],"correct":[92],"position":[93],"being":[98],"added":[99],"MeSH":[102],"thesaurus.":[103],"Whilst":[104],"results":[105],"do":[106],"not":[107],"show":[108],"desired":[110],"precision,":[111],"our":[112],"approach":[113],"shown":[115],"complementary":[118],"calculation":[120],"similarity":[123],"between":[124],"recognize":[129],"directions":[130],"future":[132],"work.":[133]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
