{"id":"https://openalex.org/W2164308157","doi":"https://doi.org/10.1145/1651318.1651332","title":"Efficient computation of impact degrees for multiple reactions in metabolic networks with cycles","display_name":"Efficient computation of impact degrees for multiple reactions in metabolic networks with cycles","publication_year":2009,"publication_date":"2009-11-06","ids":{"openalex":"https://openalex.org/W2164308157","doi":"https://doi.org/10.1145/1651318.1651332","mag":"2164308157"},"language":"en","primary_location":{"id":"doi:10.1145/1651318.1651332","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1651318.1651332","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the third international workshop on Data and text mining in bioinformatics","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102745938","display_name":"Yang Cong","orcid":"https://orcid.org/0000-0003-4340-3216"},"institutions":[{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["HK"],"is_corresponding":true,"raw_author_name":"Yang Cong","raw_affiliation_strings":["The University of Hong Kong, Hong Kong, China"],"affiliations":[{"raw_affiliation_string":"The University of Hong Kong, Hong Kong, China","institution_ids":["https://openalex.org/I889458895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041203895","display_name":"Takeyuki Tamura","orcid":"https://orcid.org/0000-0003-1596-901X"},"institutions":[{"id":"https://openalex.org/I4210088032","display_name":"Kyoto Bunkyo University","ror":"https://ror.org/0037an472","country_code":"JP","type":"education","lineage":["https://openalex.org/I4210088032"]},{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Takeyuki Tamura","raw_affiliation_strings":["Kyoto University, Uji, Japan"],"affiliations":[{"raw_affiliation_string":"Kyoto University, Uji, Japan","institution_ids":["https://openalex.org/I4210088032","https://openalex.org/I22299242"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016330265","display_name":"Tatsuya Akutsu","orcid":"https://orcid.org/0000-0001-9763-797X"},"institutions":[{"id":"https://openalex.org/I4210088032","display_name":"Kyoto Bunkyo University","ror":"https://ror.org/0037an472","country_code":"JP","type":"education","lineage":["https://openalex.org/I4210088032"]},{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Tatsuya Akutsu","raw_affiliation_strings":["Kyoto University, Uji, Japan"],"affiliations":[{"raw_affiliation_string":"Kyoto University, Uji, Japan","institution_ids":["https://openalex.org/I4210088032","https://openalex.org/I22299242"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5086061723","display_name":"Wai\u2010Ki Ching","orcid":"https://orcid.org/0000-0002-5785-3210"},"institutions":[{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Wai-Ki Ching","raw_affiliation_strings":["The University of Hong Kong, Hong Kong, China"],"affiliations":[{"raw_affiliation_string":"The University of Hong Kong, Hong Kong, China","institution_ids":["https://openalex.org/I889458895"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5102745938"],"corresponding_institution_ids":["https://openalex.org/I889458895"],"apc_list":null,"apc_paid":null,"fwci":0.2696,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.60998147,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"2","issue":"8","first_page":"67","last_page":"70"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10171","display_name":"Biofuel production and bioconversion","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.988099992275238,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.7968666553497314},{"id":"https://openalex.org/keywords/robustness","display_name":"Robustness (evolution)","score":0.7921732664108276},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7097896337509155},{"id":"https://openalex.org/keywords/simple","display_name":"Simple (philosophy)","score":0.5677388310432434},{"id":"https://openalex.org/keywords/degree","display_name":"Degree (music)","score":0.5201749801635742},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4773319363594055},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3716193437576294},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.12802454829216003},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08049258589744568}],"concepts":[{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.7968666553497314},{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.7921732664108276},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7097896337509155},{"id":"https://openalex.org/C2780586882","wikidata":"https://www.wikidata.org/wiki/Q7520643","display_name":"Simple (philosophy)","level":2,"score":0.5677388310432434},{"id":"https://openalex.org/C2775997480","wikidata":"https://www.wikidata.org/wiki/Q586277","display_name":"Degree (music)","level":2,"score":0.5201749801635742},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4773319363594055},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3716193437576294},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.12802454829216003},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08049258589744568},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1145/1651318.1651332","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1651318.1651332","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the third international workshop on Data and text mining in bioinformatics","raw_type":"proceedings-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.800.141","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.800.141","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.jsbi.org/pdfs/journal1/GIW09/Poster/GIW09P100.pdf","raw_type":"text"},{"id":"pmh:oai:hub.hku.hk:10722/158870","is_oa":false,"landing_page_url":"http://hdl.handle.net/10722/158870","pdf_url":null,"source":{"id":"https://openalex.org/S4377196271","display_name":"The HKU Scholars Hub (University of Hong Kong)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I889458895","host_organization_name":"University of Hong Kong","host_organization_lineage":["https://openalex.org/I889458895"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Conference_Paper"},{"id":"mag:1532776129","is_oa":false,"landing_page_url":"http://ci.nii.ac.jp/naid/110007990818","pdf_url":null,"source":{"id":"https://openalex.org/S52256385","display_name":"BIOSILICO","issn_l":"1478-5382","issn":["1478-5382","1878-1209"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":"BIOSILICO","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":11,"referenced_works":["https://openalex.org/W1487827847","https://openalex.org/W1966589279","https://openalex.org/W1977199071","https://openalex.org/W2010026173","https://openalex.org/W2039281572","https://openalex.org/W2057389251","https://openalex.org/W2075846943","https://openalex.org/W2101641168","https://openalex.org/W2123060905","https://openalex.org/W2131178894","https://openalex.org/W2131255911"],"related_works":["https://openalex.org/W2399035783","https://openalex.org/W1585007175","https://openalex.org/W2382521049","https://openalex.org/W2144385241","https://openalex.org/W3161230432","https://openalex.org/W4300101996","https://openalex.org/W2165950148","https://openalex.org/W4253593777","https://openalex.org/W2951497643","https://openalex.org/W2477549100"],"abstract_inverted_index":{"Analysis":[0],"of":[1,4,9,66,71,83],"the":[2,23,38,77],"robustness":[3],"a":[5,48,87],"metabolic":[6,42],"network":[7],"against":[8],"single":[10],"or":[11],"multiple":[12,67],"reaction(s)":[13],"is":[14,80],"useful":[15],"for":[16,41,51,60,64],"mining":[17],"important":[18],"enzymes/genes.":[19],"For":[20],"that":[21,76],"purpose,":[22],"impact":[24,39,62],"degree":[25,40],"was":[26],"proposed":[27],"by":[28],"Jiang":[29],"et":[30],"al.":[31],"In":[32],"this":[33],"short":[34],"paper,":[35],"we":[36,55],"extend":[37],"networks":[43],"containing":[44],"cycles":[45],"and":[46],"develop":[47],"simple":[49,88],"algorithm":[50,59,79],"its":[52],"computation.":[53],"Furthermore,":[54],"propose":[56],"an":[57],"improved":[58,78],"computing":[61],"degrees":[63],"deletions":[65],"reactions.":[68],"The":[69],"results":[70],"preliminary":[72],"computational":[73],"experiments":[74],"suggest":[75],"several":[81],"tens":[82],"times":[84],"faster":[85],"than":[86],"algorithm.":[89]},"counts_by_year":[],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
