{"id":"https://openalex.org/W2117466692","doi":"https://doi.org/10.1145/1646468.1646474","title":"Cloud technologies for bioinformatics applications","display_name":"Cloud technologies for bioinformatics applications","publication_year":2009,"publication_date":"2009-11-16","ids":{"openalex":"https://openalex.org/W2117466692","doi":"https://doi.org/10.1145/1646468.1646474","mag":"2117466692"},"language":"en","primary_location":{"id":"doi:10.1145/1646468.1646474","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1646468.1646474","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2nd Workshop on Many-Task Computing on Grids and Supercomputers","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5062652635","display_name":"Xiaohong Qiu","orcid":"https://orcid.org/0000-0003-1007-812X"},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xiaohong Qiu","raw_affiliation_strings":["Indiana University, Bloomington, IN"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Indiana University, Bloomington, IN","institution_ids":["https://openalex.org/I4210119109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023535717","display_name":"Jaliya Ekanayake","orcid":null},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jaliya Ekanayake","raw_affiliation_strings":["Indiana University, Bloomington, IN"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Indiana University, Bloomington, IN","institution_ids":["https://openalex.org/I4210119109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029188858","display_name":"Scott Beason","orcid":null},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Scott Beason","raw_affiliation_strings":["Indiana University, Bloomington, IN"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Indiana University, Bloomington, IN","institution_ids":["https://openalex.org/I4210119109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053808074","display_name":"Thilina Gunarathne","orcid":null},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Thilina Gunarathne","raw_affiliation_strings":["Indiana University, Bloomington, IN"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Indiana University, Bloomington, IN","institution_ids":["https://openalex.org/I4210119109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108016089","display_name":"Geoffrey Fox","orcid":"https://orcid.org/0000-0001-8198-4117"},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Geoffrey Fox","raw_affiliation_strings":["Indiana University, Bloomington, IN"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Indiana University, Bloomington, IN","institution_ids":["https://openalex.org/I4210119109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089941827","display_name":"Roger Barga","orcid":null},"institutions":[{"id":"https://openalex.org/I1290206253","display_name":"Microsoft (United States)","ror":"https://ror.org/00d0nc645","country_code":"US","type":"company","lineage":["https://openalex.org/I1290206253"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Roger Barga","raw_affiliation_strings":["Microsoft Research, Microsoft Corporation, Redmond, WA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Microsoft Research, Microsoft Corporation, Redmond, WA","institution_ids":["https://openalex.org/I1290206253"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5054080528","display_name":"Dennis Gannon","orcid":null},"institutions":[{"id":"https://openalex.org/I1290206253","display_name":"Microsoft (United States)","ror":"https://ror.org/00d0nc645","country_code":"US","type":"company","lineage":["https://openalex.org/I1290206253"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dennis Gannon","raw_affiliation_strings":["Microsoft Research, Microsoft Corporation, Redmond, WA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Microsoft Research, Microsoft Corporation, Redmond, WA","institution_ids":["https://openalex.org/I1290206253"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":36.4924,"has_fulltext":false,"cited_by_count":137,"citation_normalized_percentile":{"value":0.99667879,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"10"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10101","display_name":"Cloud Computing and Resource Management","score":0.994700014591217,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10101","display_name":"Cloud Computing and Resource Management","score":0.994700014591217,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12761","display_name":"Data Stream Mining Techniques","score":0.9930999875068665,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9919000267982483,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.844387948513031},{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.6544988751411438},{"id":"https://openalex.org/keywords/pairwise-comparison","display_name":"Pairwise comparison","score":0.5198562741279602},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.44890186190605164},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.4175444543361664},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.11117559671401978}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.844387948513031},{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.6544988751411438},{"id":"https://openalex.org/C184898388","wikidata":"https://www.wikidata.org/wiki/Q1435712","display_name":"Pairwise comparison","level":2,"score":0.5198562741279602},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.44890186190605164},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.4175444543361664},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.11117559671401978}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1145/1646468.1646474","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1646468.1646474","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2nd Workshop on Many-Task Computing on Grids and Supercomputers","raw_type":"proceedings-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.504.4244","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.504.4244","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://grids.ucs.indiana.edu/ptliupages/publications/MTAGS09-23.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320308943","display_name":"Microsoft Research","ror":"https://ror.org/00d0nc645"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":26,"referenced_works":["https://openalex.org/W10141861","https://openalex.org/W303800854","https://openalex.org/W1493893823","https://openalex.org/W1506821578","https://openalex.org/W1531356352","https://openalex.org/W1966585515","https://openalex.org/W1984507553","https://openalex.org/W2025887562","https://openalex.org/W2068448872","https://openalex.org/W2075168304","https://openalex.org/W2077990749","https://openalex.org/W2087064593","https://openalex.org/W2100830825","https://openalex.org/W2102130607","https://openalex.org/W2103803358","https://openalex.org/W2120676687","https://openalex.org/W2121762798","https://openalex.org/W2125301708","https://openalex.org/W2131726714","https://openalex.org/W2135377936","https://openalex.org/W2150058384","https://openalex.org/W2161877964","https://openalex.org/W2166265186","https://openalex.org/W2173213060","https://openalex.org/W2283571372","https://openalex.org/W2495346011"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W2487162673","https://openalex.org/W2793211469","https://openalex.org/W2949152769","https://openalex.org/W4372354731","https://openalex.org/W2942366970","https://openalex.org/W2807634898","https://openalex.org/W1692008701","https://openalex.org/W2597588799"],"abstract_inverted_index":{"Executing":[0],"large":[1],"number":[2],"of":[3,127],"independent":[4,106],"tasks":[5,7],"or":[6,114],"that":[8],"perform":[9],"minimal":[10],"inter-task":[11],"communication":[12],"in":[13,19,29,48],"parallel":[14,102],"is":[15],"a":[16,71,83,99,125],"common":[17],"requirement":[18],"many":[20],"domains.":[21],"In":[22],"this":[23],"paper,":[24],"we":[25],"present":[26],"our":[27],"experience":[28],"applying":[30],"two":[31,110,115],"new":[32],"Microsoft":[33],"technologies":[34],"Dryad":[35],"and":[36,70,90],"Azure":[37,92],"to":[38,65,124],"three":[39],"bioinformatics":[40],"applications.":[41],"We":[42,77],"also":[43],"compare":[44],"with":[45,98],"traditional":[46],"MPI":[47],"one":[49],"case.":[50],"The":[51],"applications":[52,96],"are":[53],"an":[54,91],"EST":[55],"(Expressed":[56],"Sequence":[57],"Tag)":[58],"sequence":[59],"assembly":[60],"program,":[61],"PhyloD":[62],"statistical":[63],"package":[64],"identify":[66],"HLA-associated":[67],"viral":[68],"evolution,":[69],"pairwise":[72],"Alu":[73],"gene":[74],"alignment":[75],"application.":[76],"give":[78],"detailed":[79],"performance":[80],"discussion":[81],"on":[82],"768":[84],"core":[85],"Windows":[86],"HPC":[87],"Server":[88],"cluster":[89],"cloud.":[93],"All":[94],"the":[95],"start":[97],"\u201cdoubly":[100],"data":[101,107],"step":[103],"\u201d":[104],"involving":[105],"chosen":[108],"from":[109],"similar":[111],"(EST,":[112],"Alu)":[113],"different":[116],"databases":[117],"(PhyloD).":[118],"Applying":[119],"CAP3":[120],"program":[121],"(for":[122],"EST)":[123],"collection":[126],"files":[128]},"counts_by_year":[{"year":2023,"cited_by_count":44},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":10},{"year":2013,"cited_by_count":18},{"year":2012,"cited_by_count":16}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
