{"id":"https://openalex.org/W3083247814","doi":"https://doi.org/10.1145/1626135.1628215","title":"Unifying Biological Image Formats with HDF5","display_name":"Unifying Biological Image Formats with HDF5","publication_year":2009,"publication_date":"2009-10-01","ids":{"openalex":"https://openalex.org/W3083247814","doi":"https://doi.org/10.1145/1626135.1628215","mag":"3083247814"},"language":"en","primary_location":{"id":"doi:10.1145/1626135.1628215","is_oa":true,"landing_page_url":"https://doi.org/10.1145/1626135.1628215","pdf_url":"http://dl.acm.org/ft_gateway.cfm?id=1628215&type=pdf","source":{"id":"https://openalex.org/S45584542","display_name":"Queue","issn_l":"1542-7730","issn":["1542-7730","1542-7749"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319798","host_organization_name":"Association for Computing Machinery","host_organization_lineage":["https://openalex.org/P4310319798"],"host_organization_lineage_names":["Association for Computing Machinery"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Queue","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"http://dl.acm.org/ft_gateway.cfm?id=1628215&type=pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5112390544","display_name":"Matthew T. Dougherty","orcid":null},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Matthew T. Dougherty","raw_affiliation_strings":[""],"affiliations":[{"raw_affiliation_string":"","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110708641","display_name":"Michael Folk","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Michael J. Folk","raw_affiliation_strings":[""],"affiliations":[{"raw_affiliation_string":"","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064923375","display_name":"Erez Zadok","orcid":"https://orcid.org/0000-0001-5248-9184"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Erez Zadok","raw_affiliation_strings":[""],"affiliations":[{"raw_affiliation_string":"","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037055623","display_name":"H. J. Bernstein","orcid":"https://orcid.org/0000-0002-0517-8532"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Herbert J. Bernstein","raw_affiliation_strings":[""],"affiliations":[{"raw_affiliation_string":"","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086033762","display_name":"F. C. Bernstein","orcid":"https://orcid.org/0000-0003-0536-0120"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Frances C. Bernstein","raw_affiliation_strings":[""],"affiliations":[{"raw_affiliation_string":"","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010413374","display_name":"Kevin W. Eliceiri","orcid":"https://orcid.org/0000-0001-8678-670X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kevin W. Eliceiri","raw_affiliation_strings":[""],"affiliations":[{"raw_affiliation_string":"","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054314843","display_name":"Werner Benger","orcid":"https://orcid.org/0000-0003-2782-175X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Werner Benger","raw_affiliation_strings":[""],"affiliations":[{"raw_affiliation_string":"","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5108728579","display_name":"Christoph Best","orcid":"https://orcid.org/0000-0001-7195-4272"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Christoph Best","raw_affiliation_strings":[""],"affiliations":[{"raw_affiliation_string":"","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5112390544"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.34057641,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"7","issue":"9","first_page":"20","last_page":"25"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9104999899864197,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9104999899864197,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9039999842643738,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7675200700759888},{"id":"https://openalex.org/keywords/variety","display_name":"Variety (cybernetics)","score":0.6408355832099915},{"id":"https://openalex.org/keywords/file-format","display_name":"File format","score":0.5994111895561218},{"id":"https://openalex.org/keywords/bridging","display_name":"Bridging (networking)","score":0.5705320835113525},{"id":"https://openalex.org/keywords/image-manipulation","display_name":"Image manipulation","score":0.45687854290008545},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.445636510848999},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.4276397228240967},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4105435013771057},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.20062175393104553},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.1447419822216034},{"id":"https://openalex.org/keywords/computer-security","display_name":"Computer security","score":0.09439054131507874}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7675200700759888},{"id":"https://openalex.org/C136197465","wikidata":"https://www.wikidata.org/wiki/Q1729295","display_name":"Variety (cybernetics)","level":2,"score":0.6408355832099915},{"id":"https://openalex.org/C97250363","wikidata":"https://www.wikidata.org/wiki/Q235557","display_name":"File format","level":2,"score":0.5994111895561218},{"id":"https://openalex.org/C174348530","wikidata":"https://www.wikidata.org/wiki/Q188635","display_name":"Bridging (networking)","level":2,"score":0.5705320835113525},{"id":"https://openalex.org/C2987933465","wikidata":"https://www.wikidata.org/wiki/Q141130","display_name":"Image manipulation","level":3,"score":0.45687854290008545},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.445636510848999},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.4276397228240967},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4105435013771057},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.20062175393104553},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.1447419822216034},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.09439054131507874}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/1626135.1628215","is_oa":true,"landing_page_url":"https://doi.org/10.1145/1626135.1628215","pdf_url":"http://dl.acm.org/ft_gateway.cfm?id=1628215&type=pdf","source":{"id":"https://openalex.org/S45584542","display_name":"Queue","issn_l":"1542-7730","issn":["1542-7730","1542-7749"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319798","host_organization_name":"Association for Computing Machinery","host_organization_lineage":["https://openalex.org/P4310319798"],"host_organization_lineage_names":["Association for Computing Machinery"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Queue","raw_type":"journal-article"}],"best_oa_location":{"id":"doi:10.1145/1626135.1628215","is_oa":true,"landing_page_url":"https://doi.org/10.1145/1626135.1628215","pdf_url":"http://dl.acm.org/ft_gateway.cfm?id=1628215&type=pdf","source":{"id":"https://openalex.org/S45584542","display_name":"Queue","issn_l":"1542-7730","issn":["1542-7730","1542-7749"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319798","host_organization_name":"Association for Computing Machinery","host_organization_lineage":["https://openalex.org/P4310319798"],"host_organization_lineage_names":["Association for Computing Machinery"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Queue","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1288310556","display_name":null,"funder_award_id":"1R13RR023192-01A1","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2375757454","display_name":null,"funder_award_id":"P41-RR-02250","funder_id":"https://openalex.org/F4320337375","funder_display_name":"National Center for Research Resources"},{"id":"https://openalex.org/G2553195102","display_name":null,"funder_award_id":"GM079429","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3611247453","display_name":null,"funder_award_id":"R01GM","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4338770585","display_name":null,"funder_award_id":"0701491","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4892058452","display_name":"HEC: File System Tracing, Replaying, Profiling, and Analysis on HEC Systems","funder_award_id":"0621463","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5947573850","display_name":null,"funder_award_id":"R01GM079429","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G6932967290","display_name":null,"funder_award_id":"R01GM079429","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7675429201","display_name":null,"funder_award_id":"5R01GM079429","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G8374479127","display_name":null,"funder_award_id":"ER64212-1027708-0011962","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G8389536563","display_name":null,"funder_award_id":"10407","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G8390356309","display_name":null,"funder_award_id":"EPS-0701491","funder_id":"https://openalex.org/F4320338283","funder_display_name":"Office of Experimental Program to Stimulate Competitive Research"},{"id":"https://openalex.org/G8437788770","display_name":null,"funder_award_id":"EPS-0701491","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8801547590","display_name":null,"funder_award_id":"GM079429","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320310395","display_name":"Louisiana State University","ror":"https://ror.org/05ect4e57"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"},{"id":"https://openalex.org/F4320337375","display_name":"National Center for Research Resources","ror":"https://ror.org/04pw6fb54"},{"id":"https://openalex.org/F4320338283","display_name":"Office of Experimental Program to Stimulate Competitive Research","ror":"https://ror.org/04k9mqs78"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3083247814.pdf","grobid_xml":"https://content.openalex.org/works/W3083247814.grobid-xml"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2949816130","https://openalex.org/W2096230562","https://openalex.org/W2225239186","https://openalex.org/W4307186884","https://openalex.org/W2037030319","https://openalex.org/W2042193908","https://openalex.org/W3183170284","https://openalex.org/W2788541584","https://openalex.org/W2572781942","https://openalex.org/W4226341727"],"abstract_inverted_index":{"The":[0],"biological":[1],"sciences":[2],"need":[3],"a":[4,49],"generic":[5],"image":[6,53],"format":[7],"suitable":[8],"for":[9],"long-term":[10],"storage":[11],"and":[12],"capable":[13],"of":[14,51,57],"handling":[15],"very":[16],"large":[17],"images.":[18],"Images":[19],"convey":[20],"profound":[21],"ideas":[22],"in":[23],"biology,":[24],"bridging":[25],"across":[26],"disciplines.":[27],"Digital":[28],"imagery":[29],"began":[30],"50":[31],"years":[32],"ago":[33],"as":[34],"an":[35,42],"obscure":[36],"technical":[37],"phenomenon.":[38],"Now":[39],"it":[40],"is":[41],"indispensable":[43],"computational":[44],"tool.":[45],"It":[46],"has":[47],"produced":[48],"variety":[50],"incompatible":[52],"file":[54],"formats,":[55],"most":[56],"which":[58],"are":[59],"already":[60],"obsolete.":[61]},"counts_by_year":[{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}