{"id":"https://openalex.org/W2076296578","doi":"https://doi.org/10.1145/1569901.1570163","title":"Parallel particle swarm optimization applied to the protein folding problem","display_name":"Parallel particle swarm optimization applied to the protein folding problem","publication_year":2009,"publication_date":"2009-07-08","ids":{"openalex":"https://openalex.org/W2076296578","doi":"https://doi.org/10.1145/1569901.1570163","mag":"2076296578"},"language":"en","primary_location":{"id":"doi:10.1145/1569901.1570163","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1569901.1570163","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 11th Annual conference on Genetic and evolutionary computation","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5002648362","display_name":"Luis Germ\u00e1n P\u00e9rez-Hern\u00e1ndez","orcid":null},"institutions":[{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":true,"raw_author_name":"Luis Germ\u00e1n P\u00e9rez-Hern\u00e1ndez","raw_affiliation_strings":["UNAM, M\u00e9xico D.F., Mexico"],"affiliations":[{"raw_affiliation_string":"UNAM, M\u00e9xico D.F., Mexico","institution_ids":["https://openalex.org/I8961855"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030786098","display_name":"Katya Rodr\u00edguez\u2010V\u00e1zquez","orcid":"https://orcid.org/0000-0002-9413-2762"},"institutions":[{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Katya Rodr\u00edguez-V\u00e1zquez","raw_affiliation_strings":["UNAM, M\u00e9xico D.F., Mexico"],"affiliations":[{"raw_affiliation_string":"UNAM, M\u00e9xico D.F., Mexico","institution_ids":["https://openalex.org/I8961855"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5074544353","display_name":"Ram\u00f3n Gardu\u00f1o\u2010Ju\u00e1rez","orcid":"https://orcid.org/0000-0002-4407-9828"},"institutions":[{"id":"https://openalex.org/I4210116760","display_name":"Universidad Americana de Morelos","ror":"https://ror.org/02cf9zs75","country_code":"MX","type":"education","lineage":["https://openalex.org/I4210116760"]},{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Ram\u00f3n Gardu\u00f1o-Ju\u00e1rez","raw_affiliation_strings":["UNAM, Cuernavaca, Edo. Morelos, Mexico","UNAM, Cuernavaca, Edo. Morelos, Mexico#TAB#"],"affiliations":[{"raw_affiliation_string":"UNAM, Cuernavaca, Edo. Morelos, Mexico","institution_ids":["https://openalex.org/I4210116760"]},{"raw_affiliation_string":"UNAM, Cuernavaca, Edo. Morelos, Mexico#TAB#","institution_ids":["https://openalex.org/I8961855"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5002648362"],"corresponding_institution_ids":["https://openalex.org/I8961855"],"apc_list":null,"apc_paid":null,"fwci":0.5249,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.65763452,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"1791","last_page":"1792"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/particle-swarm-optimization","display_name":"Particle swarm optimization","score":0.8103131651878357},{"id":"https://openalex.org/keywords/protein-structure-prediction","display_name":"Protein structure prediction","score":0.6289404034614563},{"id":"https://openalex.org/keywords/protein-folding","display_name":"Protein folding","score":0.5983729362487793},{"id":"https://openalex.org/keywords/torsion","display_name":"Torsion (gastropod)","score":0.4896312355995178},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.48632723093032837},{"id":"https://openalex.org/keywords/mathematical-optimization","display_name":"Mathematical optimization","score":0.4576614499092102},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.45434850454330444},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.3750540018081665},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2741777300834656},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.19196560978889465},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.07672363519668579}],"concepts":[{"id":"https://openalex.org/C85617194","wikidata":"https://www.wikidata.org/wiki/Q2072794","display_name":"Particle swarm optimization","level":2,"score":0.8103131651878357},{"id":"https://openalex.org/C18051474","wikidata":"https://www.wikidata.org/wiki/Q899656","display_name":"Protein structure prediction","level":3,"score":0.6289404034614563},{"id":"https://openalex.org/C204328495","wikidata":"https://www.wikidata.org/wiki/Q847556","display_name":"Protein folding","level":2,"score":0.5983729362487793},{"id":"https://openalex.org/C77461463","wikidata":"https://www.wikidata.org/wiki/Q7827201","display_name":"Torsion (gastropod)","level":2,"score":0.4896312355995178},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.48632723093032837},{"id":"https://openalex.org/C126255220","wikidata":"https://www.wikidata.org/wiki/Q141495","display_name":"Mathematical optimization","level":1,"score":0.4576614499092102},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.45434850454330444},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.3750540018081665},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2741777300834656},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.19196560978889465},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.07672363519668579},{"id":"https://openalex.org/C141071460","wikidata":"https://www.wikidata.org/wiki/Q40821","display_name":"Surgery","level":1,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/1569901.1570163","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1569901.1570163","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 11th Annual conference on Genetic and evolutionary computation","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/7","score":0.8799999952316284,"display_name":"Affordable and clean energy"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320321739","display_name":"Consejo Nacional de Ciencia y Tecnolog\u00eda","ror":"https://ror.org/059ex5q34"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":12,"referenced_works":["https://openalex.org/W1564470973","https://openalex.org/W1640378004","https://openalex.org/W1969554454","https://openalex.org/W1976449847","https://openalex.org/W2038041295","https://openalex.org/W2041149980","https://openalex.org/W2087238168","https://openalex.org/W2089591371","https://openalex.org/W2095111795","https://openalex.org/W2102074396","https://openalex.org/W2401610261","https://openalex.org/W4250503569"],"related_works":["https://openalex.org/W2946599741","https://openalex.org/W2593264178","https://openalex.org/W3171039768","https://openalex.org/W2136856901","https://openalex.org/W2368468053","https://openalex.org/W2058542300","https://openalex.org/W2043066834","https://openalex.org/W1564749278","https://openalex.org/W2294851134","https://openalex.org/W3215498386"],"abstract_inverted_index":{"This":[0],"article":[1],"presents":[2],"the":[3,11,20,24,31,52,55,59,65,69,80,91,97],"implementation":[4],"of":[5,13,22,26,48,51,61,64,71,74,79,99],"a":[6,46],"bio-inspired":[7],"algorithm,":[8],"which":[9],"is":[10,82,93],"algorithm":[12],"particle":[14],"swarm":[15],"optimization":[16],"(PSO)":[17],"in":[18,88],"with":[19,84],"objective":[21],"minimizing":[23],"function":[25],"conformational":[27],"energy":[28],"ECEPP/3":[29],"for":[30,36,68],"protein":[32],"folding":[33],"problem":[34],"(PFP)":[35],"real":[37],"conformations":[38],"considering":[39],"structural":[40],"restrictions.":[41],"In":[42],"this":[43],"case,":[44],"using":[45],"representation":[47],"torsion":[49],"angles":[50],"skeleton":[53],"and":[54],"side":[56],"chains,":[57],"applying":[58],"sequence":[60],"amino":[62],"acid":[63],"peptide":[66],"leu-enkephalin":[67],"prediction":[70],"3D":[72],"structure":[73,98],"minimum":[75],"energy.":[76],"The":[77],"quality":[78],"results":[81],"compared":[83],"other":[85],"techniques":[86],"reported":[87],"literature.":[89],"Subsequently,":[90],"PSO":[92],"used":[94],"to":[95],"predict":[96],"unknown":[100],"proteins.":[101]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
