{"id":"https://openalex.org/W1983786935","doi":"https://doi.org/10.1145/1569901.1570162","title":"Creating regular expressions as mRNA motifs with GP to predict human exon splitting","display_name":"Creating regular expressions as mRNA motifs with GP to predict human exon splitting","publication_year":2009,"publication_date":"2009-07-08","ids":{"openalex":"https://openalex.org/W1983786935","doi":"https://doi.org/10.1145/1569901.1570162","mag":"1983786935"},"language":"en","primary_location":{"id":"doi:10.1145/1569901.1570162","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1569901.1570162","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 11th Annual conference on Genetic and evolutionary computation","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5061761482","display_name":"Wiliam B. Langdon","orcid":null},"institutions":[{"id":"https://openalex.org/I183935753","display_name":"King's College London","ror":"https://ror.org/0220mzb33","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I183935753"]},{"id":"https://openalex.org/I905000135","display_name":"College of The Bahamas","ror":"https://ror.org/01c8qhb70","country_code":"BS","type":"education","lineage":["https://openalex.org/I905000135"]}],"countries":["BS","GB"],"is_corresponding":false,"raw_author_name":"Wiliam B. Langdon","raw_affiliation_strings":["King's College, London, London, Bahamas","King's College, London, London, Bahamas#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"King's College, London, London, Bahamas","institution_ids":["https://openalex.org/I905000135"]},{"raw_affiliation_string":"King's College, London, London, Bahamas#TAB#","institution_ids":["https://openalex.org/I183935753"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111896371","display_name":"Joanna Rowsell","orcid":null},"institutions":[{"id":"https://openalex.org/I110002522","display_name":"University of Essex","ror":"https://ror.org/02nkf1q06","country_code":"GB","type":"education","lineage":["https://openalex.org/I110002522"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"J. Rowsell","raw_affiliation_strings":["Essex University, CO4 3SQ, Gt Britain","Essex University, CO4 3SQ, Gt Britain#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Essex University, CO4 3SQ, Gt Britain","institution_ids":["https://openalex.org/I110002522"]},{"raw_affiliation_string":"Essex University, CO4 3SQ, Gt Britain#TAB#","institution_ids":["https://openalex.org/I110002522"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5102718909","display_name":"Andrew Harrison","orcid":"https://orcid.org/0000-0002-7849-4640"},"institutions":[{"id":"https://openalex.org/I110002522","display_name":"University of Essex","ror":"https://ror.org/02nkf1q06","country_code":"GB","type":"education","lineage":["https://openalex.org/I110002522"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"A. P. Harrison","raw_affiliation_strings":["Essex University, CO4 3SQ, AA, Azerbaijani"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Essex University, CO4 3SQ, AA, Azerbaijani","institution_ids":["https://openalex.org/I110002522"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":2.5306,"has_fulltext":false,"cited_by_count":7,"citation_normalized_percentile":{"value":0.89363803,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"1789","last_page":"1790"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9703999757766724,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9703999757766724,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9627000093460083,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9487000107765198,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/exon","display_name":"Exon","score":0.6340749859809875},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.47489848732948303},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.46569809317588806},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4438289999961853},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.357377827167511},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.22290575504302979}],"concepts":[{"id":"https://openalex.org/C36823959","wikidata":"https://www.wikidata.org/wiki/Q373027","display_name":"Exon","level":3,"score":0.6340749859809875},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.47489848732948303},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.46569809317588806},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4438289999961853},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.357377827167511},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.22290575504302979}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1145/1569901.1570162","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1569901.1570162","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 11th Annual conference on Genetic and evolutionary computation","raw_type":"proceedings-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.154.4217","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.154.4217","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cwi.nl/~bill/ftp/papers/langdon_2009_gecco.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.217.5610","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.217.5610","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.dcs.kcl.ac.uk/technical-reports/papers/TR-09-02.pdf","raw_type":"text"},{"id":"pmh:oai:eprints.ucl.ac.uk.OAI2:1327795","is_oa":false,"landing_page_url":"http://discovery.ucl.ac.uk/1327795/","pdf_url":null,"source":{"id":"https://openalex.org/S4306400024","display_name":"UCL Discovery (University College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I45129253","host_organization_name":"University College London","host_organization_lineage":["https://openalex.org/I45129253"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":": Strand, London, WC2R 2LS, UK.","raw_type":"Report"},{"id":"pmh:oai:eprints.ucl.ac.uk.OAI2:1327796","is_oa":false,"landing_page_url":"http://discovery.ucl.ac.uk/1327796/","pdf_url":null,"source":{"id":"https://openalex.org/S4306400024","display_name":"UCL Discovery (University College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I45129253","host_organization_name":"University College London","host_organization_lineage":["https://openalex.org/I45129253"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"In: Raidl, G and Rothlauf, F and Squillero, G and Drechsler, R and Stuetzle, T and Birattari, M and Congdon, CB and Middendorf, M and Blum, C and Cotta, C and Bosman, P and Grahl, J and Knowles, J and Corne, D and Beyer, H-G and Stanley, K and Miller, JF and Hemert, JV and Lenaerts, T and Ebner, M and Bacardit, J and Neill, MO and Penta, MD and Doerr, B and Jansen, T and Poli, R and Alba, E, (eds.) (pp. pp. 1789-1790). ACM: Montreal.","raw_type":"Proceedings paper"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education","score":0.41999998688697815}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":40,"referenced_works":["https://openalex.org/W58691558","https://openalex.org/W1483736078","https://openalex.org/W1486662173","https://openalex.org/W1487363620","https://openalex.org/W1487901312","https://openalex.org/W1498721980","https://openalex.org/W1503315299","https://openalex.org/W1552798612","https://openalex.org/W1559527406","https://openalex.org/W1589720045","https://openalex.org/W1591373774","https://openalex.org/W1593481303","https://openalex.org/W1947038665","https://openalex.org/W1985660361","https://openalex.org/W1999426054","https://openalex.org/W2007252896","https://openalex.org/W2026213144","https://openalex.org/W2028704597","https://openalex.org/W2030460047","https://openalex.org/W2050354902","https://openalex.org/W2057605274","https://openalex.org/W2090157266","https://openalex.org/W2097033194","https://openalex.org/W2097957138","https://openalex.org/W2106208871","https://openalex.org/W2137419493","https://openalex.org/W2148948822","https://openalex.org/W2152837692","https://openalex.org/W2153203800","https://openalex.org/W2154362705","https://openalex.org/W2160670157","https://openalex.org/W2168475725","https://openalex.org/W2170657595","https://openalex.org/W2251050944","https://openalex.org/W2296218809","https://openalex.org/W2756883857","https://openalex.org/W4206109200","https://openalex.org/W4233370974","https://openalex.org/W4285719527","https://openalex.org/W6808602063"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189","https://openalex.org/W2013243191","https://openalex.org/W1971568933"],"abstract_inverted_index":{"RNAnet":[0],"[3]":[1],"http://bioinformatics.essex.ac.uk/users/wlangdon/rnanet/":[2],"allows":[3],"the":[4,29,52,92,120,153],"user":[5],"to":[6,114,148],"calculate":[7],"correlations":[8],"of":[9,23,126,155],"gene":[10,163],"expression,":[11],"both":[12],"between":[13,16,47,124],"genes":[14],"and":[15,26,64,116,187],"components":[17,59],"within":[18,75],"genes.":[19],"We":[20,95,173],"investigate":[21],"all":[22,28],"Ensembl":[24,71,99],"http://www.ensembl.org":[25],"find":[27],"Homo":[30],"Sapiens":[31],"exons":[32,57,72,164,213],"for":[33,51],"which":[34,129,161],"there":[35],"are":[36,60,77,84,102],"sufficient":[37],"robust":[38],"Affymetrix":[39],"HG-U133":[40],"Plus":[41],"2":[42],"GeneChip":[43],"probes.":[44],"Calculating":[45],"correlation":[46,128],"mRNA":[48,168],"probe":[49],"measurements":[50],"same":[53,93],"exon":[54,100,107],"shows":[55],"many":[56,97],"whose":[58],"consistently":[61],"up":[62],"regulated":[63],"down":[65],"regulated.":[66],"However":[67],"we":[68,110],"identify":[69,117],"other":[70,89],"where":[73],"sub-regions":[74],"them":[76],"self":[78],"consistent":[79],"but":[80],"these":[81],"transcript":[82],"blocks":[83,90,125],"not":[85,205],"well":[86],"correlated":[87],"with":[88,108,165],"in":[91,119,152,185,209,217],"exon.":[94],"suggest":[96,200],"current":[98],"definitions":[101],"incomplete.":[103],"Secondly,":[104],"having":[105],"identified":[106],"substructure":[109],"use":[111],"machine":[112],"learning":[113],"try":[115],"patterns":[118,176],"DNA":[121,198],"sequence":[122],"lying":[123],"high":[127],"might":[130],"yield":[131],"biological":[132,150,175],"or":[133],"technological":[134],"explanations.":[135],"A":[136],"Backus-Naur":[137],"form":[138,154],"(BNF)":[139],"context-free":[140],"grammar":[141],"constrains":[142],"strongly":[143],"typed":[144],"genetic":[145],"programming":[146],"(STGP)":[147],"evolve":[149],"motifs":[151,199],"regular":[156],"expressions":[157],"(RE)":[158],"(e.g.":[159],"TCTTT)":[160],"classify":[162],"potential":[166],"alternative":[167,202],"expression":[169],"from":[170,190],"those":[171],"without.":[172],"show":[174],"can":[177,214],"be":[178,215],"data":[179],"mined":[180],"by":[181],"a":[182],"GP":[183],"written":[184],"gawk":[186],"using":[188],"egrep":[189],"NCBI's":[191],"GEO":[192],"http://www.ncbi.nlm.nih.gov/geo/":[193],"database.":[194],"The":[195],"automatically":[196],"produced":[197],"that":[201],"polyadenylation":[203],"is":[204],"responsible.":[206],"(Full":[207],"version":[208],"TR-09-02":[210],"[7].)":[211],"Blocky":[212],"found":[216],"http://bioinformatics.essex.ac.uk/users/wlangdon/tr-09-02.tar.gz":[218]},"counts_by_year":[{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":3}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
