{"id":"https://openalex.org/W2070291575","doi":"https://doi.org/10.1145/1562764.1562781","title":"Unifying biological image formats with HDF5","display_name":"Unifying biological image formats with HDF5","publication_year":2009,"publication_date":"2009-10-01","ids":{"openalex":"https://openalex.org/W2070291575","doi":"https://doi.org/10.1145/1562764.1562781","mag":"2070291575","pmid":"https://pubmed.ncbi.nlm.nih.gov/21218176"},"language":"en","primary_location":{"id":"doi:10.1145/1562764.1562781","is_oa":true,"landing_page_url":"https://doi.org/10.1145/1562764.1562781","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/1562764.1562781","source":{"id":"https://openalex.org/S103482838","display_name":"Communications of the ACM","issn_l":"0001-0782","issn":["0001-0782","1557-7317"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319798","host_organization_name":"Association for Computing Machinery","host_organization_lineage":["https://openalex.org/P4310319798"],"host_organization_lineage_names":["Association for Computing Machinery"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Communications of the ACM","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://dl.acm.org/doi/pdf/10.1145/1562764.1562781","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5112390544","display_name":"Matthew T. Dougherty","orcid":null},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Matthew T. Dougherty","raw_affiliation_strings":["National Center for Macromolecular Imaging"],"affiliations":[{"raw_affiliation_string":"National Center for Macromolecular Imaging","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110708641","display_name":"Michael Folk","orcid":null},"institutions":[{"id":"https://openalex.org/I2802624869","display_name":"Hereditary Disease Foundation","ror":"https://ror.org/02a3w7r50","country_code":"US","type":"other","lineage":["https://openalex.org/I2802624869"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael J. Folk","raw_affiliation_strings":["The HDF Group"],"affiliations":[{"raw_affiliation_string":"The HDF Group","institution_ids":["https://openalex.org/I2802624869"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064923375","display_name":"Erez Zadok","orcid":"https://orcid.org/0000-0001-5248-9184"},"institutions":[{"id":"https://openalex.org/I59553526","display_name":"Stony Brook University","ror":"https://ror.org/05qghxh33","country_code":"US","type":"education","lineage":["https://openalex.org/I59553526"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Erez Zadok","raw_affiliation_strings":["Stony Brook University"],"affiliations":[{"raw_affiliation_string":"Stony Brook University","institution_ids":["https://openalex.org/I59553526"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037055623","display_name":"H. J. Bernstein","orcid":"https://orcid.org/0000-0002-0517-8532"},"institutions":[{"id":"https://openalex.org/I162646704","display_name":"Dowling College","ror":"https://ror.org/011ezgm44","country_code":"US","type":"education","lineage":["https://openalex.org/I162646704"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Herbert J. Bernstein","raw_affiliation_strings":["Dowling College","Dowling COllege"],"affiliations":[{"raw_affiliation_string":"Dowling College","institution_ids":["https://openalex.org/I162646704"]},{"raw_affiliation_string":"Dowling COllege","institution_ids":["https://openalex.org/I162646704"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086033762","display_name":"F. C. Bernstein","orcid":"https://orcid.org/0000-0003-0536-0120"},"institutions":[{"id":"https://openalex.org/I200870766","display_name":"Brookhaven National Laboratory","ror":"https://ror.org/02ex6cf31","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I200870766","https://openalex.org/I39565521","https://openalex.org/I4210142672"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Frances C. Bernstein","raw_affiliation_strings":["Brookhaven National Laboratory","[Brookhaven National Laboratory]"],"affiliations":[{"raw_affiliation_string":"Brookhaven National Laboratory","institution_ids":["https://openalex.org/I200870766"]},{"raw_affiliation_string":"[Brookhaven National Laboratory]","institution_ids":["https://openalex.org/I200870766"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010413374","display_name":"Kevin W. Eliceiri","orcid":"https://orcid.org/0000-0001-8678-670X"},"institutions":[{"id":"https://openalex.org/I135310074","display_name":"University of Wisconsin\u2013Madison","ror":"https://ror.org/01y2jtd41","country_code":"US","type":"education","lineage":["https://openalex.org/I135310074"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kevin W. Eliceiri","raw_affiliation_strings":["University of Wisconsin-Madison","University of Wisconsin, Madison"],"affiliations":[{"raw_affiliation_string":"University of Wisconsin-Madison","institution_ids":["https://openalex.org/I135310074"]},{"raw_affiliation_string":"University of Wisconsin, Madison","institution_ids":["https://openalex.org/I135310074"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054314843","display_name":"Werner Benger","orcid":"https://orcid.org/0000-0003-2782-175X"},"institutions":[{"id":"https://openalex.org/I121820613","display_name":"Louisiana State University","ror":"https://ror.org/05ect4e57","country_code":"US","type":"education","lineage":["https://openalex.org/I121820613"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Werner Benger","raw_affiliation_strings":["Louisiana State University","Louisiana State University**"],"affiliations":[{"raw_affiliation_string":"Louisiana State University","institution_ids":["https://openalex.org/I121820613"]},{"raw_affiliation_string":"Louisiana State University**","institution_ids":["https://openalex.org/I121820613"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5108728579","display_name":"Christoph Best","orcid":"https://orcid.org/0000-0001-7195-4272"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Christoph Best","raw_affiliation_strings":["European Bioinformatics Institute"],"affiliations":[{"raw_affiliation_string":"European Bioinformatics Institute","institution_ids":["https://openalex.org/I1303153112"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5112390544"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":6.1401,"has_fulltext":false,"cited_by_count":56,"citation_normalized_percentile":{"value":0.95305425,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"52","issue":"10","first_page":"42","last_page":"47"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9908999800682068,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9908999800682068,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.921999990940094,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7170875072479248},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.4407734274864197},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.1822546124458313}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7170875072479248},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.4407734274864197},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.1822546124458313}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1145/1562764.1562781","is_oa":true,"landing_page_url":"https://doi.org/10.1145/1562764.1562781","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/1562764.1562781","source":{"id":"https://openalex.org/S103482838","display_name":"Communications of the ACM","issn_l":"0001-0782","issn":["0001-0782","1557-7317"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319798","host_organization_name":"Association for Computing Machinery","host_organization_lineage":["https://openalex.org/P4310319798"],"host_organization_lineage_names":["Association for Computing Machinery"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Communications of the ACM","raw_type":"journal-article"},{"id":"pmid:21218176","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21218176","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Communications of the ACM","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:3016045","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3016045","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Commun ACM","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1145/1562764.1562781","is_oa":true,"landing_page_url":"https://doi.org/10.1145/1562764.1562781","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/1562764.1562781","source":{"id":"https://openalex.org/S103482838","display_name":"Communications of the ACM","issn_l":"0001-0782","issn":["0001-0782","1557-7317"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319798","host_organization_name":"Association for Computing Machinery","host_organization_lineage":["https://openalex.org/P4310319798"],"host_organization_lineage_names":["Association for Computing Machinery"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Communications of the ACM","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1166318460","display_name":null,"funder_award_id":"BB/G022577/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G1288310556","display_name":null,"funder_award_id":"1R13RR023192-01A1","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2375757454","display_name":null,"funder_award_id":"P41-RR-02250","funder_id":"https://openalex.org/F4320337375","funder_display_name":"National Center for Research Resources"},{"id":"https://openalex.org/G2553195102","display_name":null,"funder_award_id":"GM079429","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2882584166","display_name":null,"funder_award_id":"DBI-0610407CCF-0621463","funder_id":"https://openalex.org/F4320337398","funder_display_name":"Division of Biological Infrastructure"},{"id":"https://openalex.org/G3611247453","display_name":null,"funder_award_id":"R01GM","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4338770585","display_name":null,"funder_award_id":"0701491","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4892058452","display_name":"HEC: File System Tracing, Replaying, Profiling, and Analysis on HEC Systems","funder_award_id":"0621463","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5947573850","display_name":null,"funder_award_id":"R01GM079429","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G671771937","display_name":null,"funder_award_id":"DBI-0610407CCF-0621463","funder_id":"https://openalex.org/F4320337387","funder_display_name":"Division of Computing and Communication Foundations"},{"id":"https://openalex.org/G6932967290","display_name":null,"funder_award_id":"R01GM079429","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G727179197","display_name":null,"funder_award_id":"1R13RR023192-01A1R03EB008516","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7675429201","display_name":null,"funder_award_id":"5R01GM079429","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G8374479127","display_name":null,"funder_award_id":"ER64212-1027708-0011962","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G8389536563","display_name":null,"funder_award_id":"10407","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G8390356309","display_name":null,"funder_award_id":"EPS-0701491","funder_id":"https://openalex.org/F4320338283","funder_display_name":"Office of Experimental Program to Stimulate Competitive Research"},{"id":"https://openalex.org/G8437788770","display_name":null,"funder_award_id":"EPS-0701491","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8801547590","display_name":null,"funder_award_id":"GM079429","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320310395","display_name":"Louisiana State University","ror":"https://ror.org/05ect4e57"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"},{"id":"https://openalex.org/F4320337375","display_name":"National Center for Research Resources","ror":"https://ror.org/04pw6fb54"},{"id":"https://openalex.org/F4320337387","display_name":"Division of Computing and Communication Foundations","ror":"https://ror.org/01mng8331"},{"id":"https://openalex.org/F4320337398","display_name":"Division of Biological Infrastructure","ror":"https://ror.org/04qn9mx93"},{"id":"https://openalex.org/F4320338283","display_name":"Office of Experimental Program to Stimulate Competitive Research","ror":"https://ror.org/04k9mqs78"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2070291575.pdf","grobid_xml":"https://content.openalex.org/works/W2070291575.grobid-xml"},"referenced_works_count":1,"referenced_works":["https://openalex.org/W1488446931"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052"],"abstract_inverted_index":{"The":[0],"biosciences":[1],"need":[2],"an":[3],"image":[4],"format":[5],"capable":[6],"of":[7],"high":[8],"performance":[9],"and":[10],"long-term":[11],"maintenance.":[12],"Is":[13],"HDF5":[14],"the":[15],"answer?":[16]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":7}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}