{"id":"https://openalex.org/W2195111896","doi":"https://doi.org/10.1145/1562764.1562780","title":"Probing biomolecular machines with graphics processors","display_name":"Probing biomolecular machines with graphics processors","publication_year":2009,"publication_date":"2009-10-01","ids":{"openalex":"https://openalex.org/W2195111896","doi":"https://doi.org/10.1145/1562764.1562780","mag":"2195111896"},"language":"en","primary_location":{"id":"doi:10.1145/1562764.1562780","is_oa":true,"landing_page_url":"https://doi.org/10.1145/1562764.1562780","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/1562764.1562780","source":{"id":"https://openalex.org/S103482838","display_name":"Communications of the ACM","issn_l":"0001-0782","issn":["0001-0782","1557-7317"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319798","host_organization_name":"Association for Computing Machinery","host_organization_lineage":["https://openalex.org/P4310319798"],"host_organization_lineage_names":["Association for Computing Machinery"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Communications of the ACM","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://dl.acm.org/doi/pdf/10.1145/1562764.1562780","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5056552672","display_name":"J. C. Phillips","orcid":"https://orcid.org/0000-0002-2296-3591"},"institutions":[{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"James C. Phillips","raw_affiliation_strings":["Beckman Institute for Advanced Science and Technology at the University of Illinois at Urbana-Champaign"],"affiliations":[{"raw_affiliation_string":"Beckman Institute for Advanced Science and Technology at the University of Illinois at Urbana-Champaign","institution_ids":["https://openalex.org/I157725225"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5048680880","display_name":"John E. Stone","orcid":"https://orcid.org/0000-0001-7215-762X"},"institutions":[{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"John E. Stone","raw_affiliation_strings":["Beckman Institute for Advanced Science and Technology at the University of Illinois at Urbana-Champaign"],"affiliations":[{"raw_affiliation_string":"Beckman Institute for Advanced Science and Technology at the University of Illinois at Urbana-Champaign","institution_ids":["https://openalex.org/I157725225"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5056552672"],"corresponding_institution_ids":["https://openalex.org/I157725225"],"apc_list":null,"apc_paid":null,"fwci":1.1811,"has_fulltext":true,"cited_by_count":18,"citation_normalized_percentile":{"value":0.78284522,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"52","issue":"10","first_page":"34","last_page":"41"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10492","display_name":"Microtubule and mitosis dynamics","score":0.9890999794006348,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9819999933242798,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7537524700164795},{"id":"https://openalex.org/keywords/graphics","display_name":"Graphics","score":0.6354730129241943},{"id":"https://openalex.org/keywords/acceleration","display_name":"Acceleration","score":0.5863195657730103},{"id":"https://openalex.org/keywords/general-purpose-computing-on-graphics-processing-units","display_name":"General-purpose computing on graphics processing units","score":0.4873262345790863},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics","score":0.431867778301239},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.42841649055480957},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.3899913430213928},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.35259443521499634},{"id":"https://openalex.org/keywords/computer-architecture","display_name":"Computer architecture","score":0.34530943632125854}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7537524700164795},{"id":"https://openalex.org/C21442007","wikidata":"https://www.wikidata.org/wiki/Q1027879","display_name":"Graphics","level":2,"score":0.6354730129241943},{"id":"https://openalex.org/C117896860","wikidata":"https://www.wikidata.org/wiki/Q11376","display_name":"Acceleration","level":2,"score":0.5863195657730103},{"id":"https://openalex.org/C50630238","wikidata":"https://www.wikidata.org/wiki/Q971505","display_name":"General-purpose computing on graphics processing units","level":3,"score":0.4873262345790863},{"id":"https://openalex.org/C77660652","wikidata":"https://www.wikidata.org/wiki/Q150971","display_name":"Computer graphics","level":2,"score":0.431867778301239},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.42841649055480957},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.3899913430213928},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.35259443521499634},{"id":"https://openalex.org/C118524514","wikidata":"https://www.wikidata.org/wiki/Q173212","display_name":"Computer architecture","level":1,"score":0.34530943632125854},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C74650414","wikidata":"https://www.wikidata.org/wiki/Q11397","display_name":"Classical mechanics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/1562764.1562780","is_oa":true,"landing_page_url":"https://doi.org/10.1145/1562764.1562780","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/1562764.1562780","source":{"id":"https://openalex.org/S103482838","display_name":"Communications of the ACM","issn_l":"0001-0782","issn":["0001-0782","1557-7317"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319798","host_organization_name":"Association for Computing Machinery","host_organization_lineage":["https://openalex.org/P4310319798"],"host_organization_lineage_names":["Association for Computing Machinery"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Communications of the ACM","raw_type":"journal-article"}],"best_oa_location":{"id":"doi:10.1145/1562764.1562780","is_oa":true,"landing_page_url":"https://doi.org/10.1145/1562764.1562780","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/1562764.1562780","source":{"id":"https://openalex.org/S103482838","display_name":"Communications of the ACM","issn_l":"0001-0782","issn":["0001-0782","1557-7317"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319798","host_organization_name":"Association for Computing Machinery","host_organization_lineage":["https://openalex.org/P4310319798"],"host_organization_lineage_names":["Association for Computing Machinery"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Communications of the ACM","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/7","display_name":"Affordable and clean energy","score":0.7200000286102295}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2195111896.pdf","grobid_xml":"https://content.openalex.org/works/W2195111896.grobid-xml"},"referenced_works_count":26,"referenced_works":["https://openalex.org/W1512189622","https://openalex.org/W1973858832","https://openalex.org/W2007501632","https://openalex.org/W2013173369","https://openalex.org/W2028499920","https://openalex.org/W2029667189","https://openalex.org/W2032309817","https://openalex.org/W2034834303","https://openalex.org/W2078391824","https://openalex.org/W2090024033","https://openalex.org/W2102927018","https://openalex.org/W2141579716","https://openalex.org/W2150981663","https://openalex.org/W2155417823","https://openalex.org/W2155503253","https://openalex.org/W2159497832","https://openalex.org/W2163112106","https://openalex.org/W2163798155","https://openalex.org/W2167173222","https://openalex.org/W2270278874","https://openalex.org/W2295862081","https://openalex.org/W2296015560","https://openalex.org/W3138798301","https://openalex.org/W4241513866","https://openalex.org/W4250981202","https://openalex.org/W6694235415"],"related_works":["https://openalex.org/W2505380084","https://openalex.org/W1656096860","https://openalex.org/W641925902","https://openalex.org/W2149904643","https://openalex.org/W2221819563","https://openalex.org/W2095928260","https://openalex.org/W2268149564","https://openalex.org/W1984739956","https://openalex.org/W2763312740","https://openalex.org/W2043140447"],"abstract_inverted_index":{"GPU":[0],"acceleration":[1],"and":[2],"other":[3],"computer":[4],"performance":[5],"increases":[6],"will":[7],"offer":[8],"critical":[9],"benefits":[10],"to":[11],"biomedical":[12],"science.":[13]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":3}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
