{"id":"https://openalex.org/W1981128563","doi":"https://doi.org/10.1145/1559845.1559987","title":"Exploring biomedical databases with BioNav","display_name":"Exploring biomedical databases with BioNav","publication_year":2009,"publication_date":"2009-06-29","ids":{"openalex":"https://openalex.org/W1981128563","doi":"https://doi.org/10.1145/1559845.1559987","mag":"1981128563"},"language":"en","primary_location":{"id":"doi:10.1145/1559845.1559987","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1559845.1559987","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2009 ACM SIGMOD International Conference on Management of data","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5006306262","display_name":"Abhijith Kashyap","orcid":null},"institutions":[{"id":"https://openalex.org/I115441956","display_name":"Buffalo State University","ror":"https://ror.org/05ms04m92","country_code":"US","type":"education","lineage":["https://openalex.org/I115441956"]},{"id":"https://openalex.org/I63190737","display_name":"University at Buffalo, State University of New York","ror":"https://ror.org/01y64my43","country_code":"US","type":"education","lineage":["https://openalex.org/I63190737"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Abhijith Kashyap","raw_affiliation_strings":["SUNY Buffalo, Buffalo, NY, USA","SUNY - Buffalo Buffalo, NY, USA"],"affiliations":[{"raw_affiliation_string":"SUNY Buffalo, Buffalo, NY, USA","institution_ids":["https://openalex.org/I115441956","https://openalex.org/I63190737"]},{"raw_affiliation_string":"SUNY - Buffalo Buffalo, NY, USA","institution_ids":["https://openalex.org/I63190737"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113814074","display_name":"Vagelis Hristidis","orcid":null},"institutions":[{"id":"https://openalex.org/I19700959","display_name":"Florida International University","ror":"https://ror.org/02gz6gg07","country_code":"US","type":"education","lineage":["https://openalex.org/I19700959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Vagelis Hristidis","raw_affiliation_strings":["Florida International University, Miami, FL, USA"],"affiliations":[{"raw_affiliation_string":"Florida International University, Miami, FL, USA","institution_ids":["https://openalex.org/I19700959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027125531","display_name":"Michalis Petropoulos","orcid":null},"institutions":[{"id":"https://openalex.org/I63190737","display_name":"University at Buffalo, State University of New York","ror":"https://ror.org/01y64my43","country_code":"US","type":"education","lineage":["https://openalex.org/I63190737"]},{"id":"https://openalex.org/I115441956","display_name":"Buffalo State University","ror":"https://ror.org/05ms04m92","country_code":"US","type":"education","lineage":["https://openalex.org/I115441956"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michalis Petropoulos","raw_affiliation_strings":["SUNY Buffalo, Buffalo, NY, USA","SUNY - Buffalo Buffalo, NY, USA"],"affiliations":[{"raw_affiliation_string":"SUNY Buffalo, Buffalo, NY, USA","institution_ids":["https://openalex.org/I115441956","https://openalex.org/I63190737"]},{"raw_affiliation_string":"SUNY - Buffalo Buffalo, NY, USA","institution_ids":["https://openalex.org/I63190737"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5003361772","display_name":"Sotiria Tavoulari","orcid":"https://orcid.org/0000-0002-4263-8905"},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sotiria Tavoulari","raw_affiliation_strings":["Yale University, New haven, CT, USA"],"affiliations":[{"raw_affiliation_string":"Yale University, New haven, CT, USA","institution_ids":["https://openalex.org/I32971472"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5006306262"],"corresponding_institution_ids":["https://openalex.org/I115441956","https://openalex.org/I63190737"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.08649583,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1079","last_page":"1082"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9890999794006348,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9837999939918518,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.81316739320755},{"id":"https://openalex.org/keywords/hierarchy","display_name":"Hierarchy","score":0.6834011077880859},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5761125683784485},{"id":"https://openalex.org/keywords/contrast","display_name":"Contrast (vision)","score":0.5503458976745605},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.4825124740600586},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.4518794119358063},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.43910062313079834},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.41440141201019287},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.18457025289535522}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.81316739320755},{"id":"https://openalex.org/C31170391","wikidata":"https://www.wikidata.org/wiki/Q188619","display_name":"Hierarchy","level":2,"score":0.6834011077880859},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5761125683784485},{"id":"https://openalex.org/C2776502983","wikidata":"https://www.wikidata.org/wiki/Q690182","display_name":"Contrast (vision)","level":2,"score":0.5503458976745605},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.4825124740600586},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.4518794119358063},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.43910062313079834},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.41440141201019287},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.18457025289535522},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C34447519","wikidata":"https://www.wikidata.org/wiki/Q179522","display_name":"Market economy","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1145/1559845.1559987","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1559845.1559987","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2009 ACM SIGMOD International Conference on Management of data","raw_type":"proceedings-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.151.6205","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.151.6205","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cs.fiu.edu/~vagelis/publications/sigmod%20demo%202009-bionav_CR.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.158.3998","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.158.3998","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cse.buffalo.edu/~mpetropo/pubs/sigmod-bionav_CR.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.638.8014","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.638.8014","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cse.buffalo.edu/~mpetropo/pubs/BioNavDemo.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":5,"referenced_works":["https://openalex.org/W1552716293","https://openalex.org/W2062872677","https://openalex.org/W2130476464","https://openalex.org/W2145343070","https://openalex.org/W2977393556"],"related_works":["https://openalex.org/W2365264209","https://openalex.org/W962203960","https://openalex.org/W2026999166","https://openalex.org/W2069592018","https://openalex.org/W2075740387","https://openalex.org/W1599954583","https://openalex.org/W1996802783","https://openalex.org/W2509431957","https://openalex.org/W4211007821","https://openalex.org/W2802395037"],"abstract_inverted_index":{"We":[0],"demonstrate":[1],"the":[2,38,54,63,75],"BioNav":[3,15,47,86],"system,":[4],"a":[5,30,44,50,78],"novel":[6],"search":[7],"interface":[8],"for":[9],"biomedical":[10],"databases,":[11],"such":[12,61],"as":[13],"PubMed.":[14,36],"enables":[16],"users":[17],"to":[18],"navigate":[19],"large":[20],"number":[21],"of":[22,53],"query":[23,39],"results":[24,40],"by":[25,35],"categorizing":[26],"them":[27],"using":[28],"MeSH;":[29],"comprehensive":[31],"concept":[32,55],"hierarchy":[33,76],"used":[34],"Once":[37],"are":[41],"organized":[42],"into":[43],"navigation":[45,66,83],"tree,":[46],"reveals":[48],"only":[49],"small":[51],"subset":[52],"nodes":[56],"at":[57,89],"each":[58],"step,":[59],"selected":[60],"that":[62],"expected":[64],"user":[65],"cost":[67,84],"is":[68,87],"minimized.":[69],"In":[70],"contrast,":[71],"previous":[72],"works":[73],"expand":[74],"in":[77],"predefined":[79],"static":[80],"manner,":[81],"without":[82],"modeling.":[85],"available":[88],"http://db.cse.buffalo.edu/bionav.":[90]},"counts_by_year":[],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
