{"id":"https://openalex.org/W2060268739","doi":"https://doi.org/10.1145/1556262.1556318","title":"Modeling biological reactivity","display_name":"Modeling biological reactivity","publication_year":2002,"publication_date":"2002-05-22","ids":{"openalex":"https://openalex.org/W2060268739","doi":"https://doi.org/10.1145/1556262.1556318","mag":"2060268739"},"language":"en","primary_location":{"id":"doi:10.1145/1556262.1556318","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1556262.1556318","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Working Conference on Advanced Visual Interfaces","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5015050292","display_name":"Naaman Kam","orcid":null},"institutions":[{"id":"https://openalex.org/I53964585","display_name":"Weizmann Institute of Science","ror":"https://ror.org/0316ej306","country_code":"IL","type":"education","lineage":["https://openalex.org/I53964585"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Naaman Kam","raw_affiliation_strings":["The Weizmann Institute of Science, Rehovot, Israel"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Weizmann Institute of Science, Rehovot, Israel","institution_ids":["https://openalex.org/I53964585"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019647534","display_name":"Irun R. Cohen","orcid":"https://orcid.org/0000-0002-3906-6993"},"institutions":[{"id":"https://openalex.org/I53964585","display_name":"Weizmann Institute of Science","ror":"https://ror.org/0316ej306","country_code":"IL","type":"education","lineage":["https://openalex.org/I53964585"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Irun R. Cohen","raw_affiliation_strings":["The Weizmann Institute of Science, Rehovot, Israel"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Weizmann Institute of Science, Rehovot, Israel","institution_ids":["https://openalex.org/I53964585"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5088778612","display_name":"David Harel","orcid":"https://orcid.org/0000-0001-7240-3931"},"institutions":[{"id":"https://openalex.org/I53964585","display_name":"Weizmann Institute of Science","ror":"https://ror.org/0316ej306","country_code":"IL","type":"education","lineage":["https://openalex.org/I53964585"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"David Harel","raw_affiliation_strings":["The Weizmann Institute of Science, Rehovot, Israel"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Weizmann Institute of Science, Rehovot, Israel","institution_ids":["https://openalex.org/I53964585"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I53964585"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":21,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"345","last_page":"353"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10142","display_name":"Formal Methods in Verification","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11450","display_name":"Model-Driven Software Engineering Techniques","score":0.9943000078201294,"subfield":{"id":"https://openalex.org/subfields/1712","display_name":"Software"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rotation-formalisms-in-three-dimensions","display_name":"Rotation formalisms in three dimensions","score":0.9416484832763672},{"id":"https://openalex.org/keywords/formalism","display_name":"Formalism (music)","score":0.7934021949768066},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7122931480407715},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.5107979774475098},{"id":"https://openalex.org/keywords/modeling-language","display_name":"Modeling language","score":0.48849284648895264},{"id":"https://openalex.org/keywords/visual-modeling","display_name":"Visual modeling","score":0.44895070791244507},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.3792050778865814},{"id":"https://openalex.org/keywords/unified-modeling-language","display_name":"Unified Modeling Language","score":0.30543023347854614},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1383846402168274},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.08055859804153442}],"concepts":[{"id":"https://openalex.org/C171018156","wikidata":"https://www.wikidata.org/wiki/Q7370306","display_name":"Rotation formalisms in three dimensions","level":2,"score":0.9416484832763672},{"id":"https://openalex.org/C73301696","wikidata":"https://www.wikidata.org/wiki/Q5469984","display_name":"Formalism (music)","level":3,"score":0.7934021949768066},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7122931480407715},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.5107979774475098},{"id":"https://openalex.org/C179603123","wikidata":"https://www.wikidata.org/wiki/Q1941921","display_name":"Modeling language","level":3,"score":0.48849284648895264},{"id":"https://openalex.org/C2780330621","wikidata":"https://www.wikidata.org/wiki/Q7936609","display_name":"Visual modeling","level":4,"score":0.44895070791244507},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.3792050778865814},{"id":"https://openalex.org/C145644426","wikidata":"https://www.wikidata.org/wiki/Q169411","display_name":"Unified Modeling Language","level":3,"score":0.30543023347854614},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1383846402168274},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.08055859804153442},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C558565934","wikidata":"https://www.wikidata.org/wiki/Q2743","display_name":"Musical","level":2,"score":0.0},{"id":"https://openalex.org/C153349607","wikidata":"https://www.wikidata.org/wiki/Q36649","display_name":"Visual arts","level":1,"score":0.0},{"id":"https://openalex.org/C142362112","wikidata":"https://www.wikidata.org/wiki/Q735","display_name":"Art","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/1556262.1556318","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1556262.1556318","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Working Conference on Advanced Visual Interfaces","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":8,"referenced_works":["https://openalex.org/W1546220007","https://openalex.org/W1754883368","https://openalex.org/W1944506262","https://openalex.org/W1979831177","https://openalex.org/W2054419682","https://openalex.org/W2099529102","https://openalex.org/W2118325805","https://openalex.org/W2121163444"],"related_works":["https://openalex.org/W2952249082","https://openalex.org/W2061420542","https://openalex.org/W2074343215","https://openalex.org/W2555062806","https://openalex.org/W2363773515","https://openalex.org/W2385239434","https://openalex.org/W2362000077","https://openalex.org/W27952981","https://openalex.org/W2354363933","https://openalex.org/W2071433511"],"abstract_inverted_index":{"Remarkable":[0],"progress":[1],"in":[2,9],"various":[3],"fields":[4],"of":[5,12,16,20,55,76,86,99,116,169,175,187,196,203,216],"biology":[6,32,56],"is":[7,24,48],"leading":[8],"the":[10,17,59,65,74,84,92,96,113,124,167,176,183,194,201,214],"direction":[11],"a":[13,45,68,79,87,103,129,143,160],"complete":[14],"map":[15],"building":[18,60],"blocks":[19,61],"biological":[21,225],"systems.":[22,226],"There":[23],"broad":[25],"agreement":[26],"among":[27],"researchers":[28],"that":[29,52,193],"21st":[30],"century":[31],"will":[33],"focus":[34],"on":[35,73,208],"attempting":[36],"to":[37,43,63,128,181],"understand":[38],"how":[39],"component":[40],"parts":[41,66],"collaborate":[42],"create":[44],"whole.":[46],"It":[47],"also":[49],"well":[50],"agreed":[51],"this":[53,120,197],"transition":[54],"from":[57],"identifying":[58],"(analysis)":[62],"integrating":[64],"into":[67,166],"whole":[69],"(synthesis)":[70],"should":[71,212],"rely":[72],"language":[75,168],"mathematics.":[77],"In":[78,119],"recent":[80],"publication,":[81],"we":[82,122],"described":[83],"results":[85,195,202],"first":[88],"attempt":[89],"at":[90],"confronting":[91],"above":[93],"challenge":[94],"using":[95,110,158],"visual":[97,217],"formalism":[98,131],"statecharts.":[100,170],"We":[101,191],"presented":[102,132],"detailed":[104],"model":[105,144],"for":[106,145,222],"T":[107,146,209],"cell":[108,147,210],"activation":[109,148],"statecharts":[111,221],"within":[112],"general":[114],"framework":[115],"object-oriented":[117],"modeling.":[118],"work,":[121,198],"compare":[123],"statechart-based":[125],"modeling":[126,189,206,223],"approach":[127],"Boolean":[130,161],"by":[133,141,154],"Thomas":[134],"&":[135],"D'Ari.":[136],"This":[137],"comparison":[138],"was":[139,152],"done":[140],"taking":[142],"and":[149,163,185],"anergy,":[150],"which":[151],"constructed":[153],"Kaufman":[155],"et":[156],"al.":[157],"such":[159,219],"formalism,":[162],"translating":[164],"it":[165],"Comparing":[171],"these":[172],"two":[173],"representations":[174],"same":[177],"phenomena":[178],"allows":[179],"us":[180],"assess":[182],"advantages":[184],"disadvantages":[186],"each":[188],"approach.":[190],"believe":[192],"together":[199],"with":[200],"our":[204],"previous":[205],"work":[207],"activation,":[211],"encourage":[213],"use":[215],"formalisms":[218],"as":[220],"complex":[224]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2018,"cited_by_count":1}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
